FFCP PHASE1:Hg19::chr1:28477302..28477324,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5724 | |EntrezGene=5724 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9582 | |HGNC=9582 | ||
|TSSclassifier=strong | |||
|UniProt=P25105 | |UniProt=P25105 | ||
|association_with_transcript=207bp_to_AB464653,AY275466,BT009801,CU687620,DQ891716,DQ894893,EU832802,GQ129382,L07334_5end | |association_with_transcript=207bp_to_AB464653,AY275466,BT009801,CU687620,DQ891716,DQ894893,EU832802,GQ129382,L07334_5end | ||
|cluster_id=chr1:28477302..28477324,- | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_8_at_PTAFR_5end | |description=CAGE_peak_8_at_PTAFR_5end | ||
|id=chr1:28477302..28477324,- | |id=chr1:28477302..28477324,- | ||
|ontology_enrichment_celltype=CL:0000766!3.05e-60!76;CL:0002194!4.50e-58!63;CL:0000576!4.50e-58!63;CL:0000040!4.50e-58!63;CL:0000559!4.50e-58!63;CL:0002057!5.07e-57!42;CL:0002009!9.94e-56!65;CL:0000839!2.69e-52!70;CL:0000860!3.47e-52!45;CL:0000557!2.66e-51!71;CL:0000763!7.65e-42!112;CL:0000049!7.65e-42!112;CL:0000738!8.45e-37!140;CL:0002087!3.06e-36!119;CL:0000037!3.62e-31!172;CL:0000566!3.62e-31!172;CL:0002031!3.87e-31!124;CL:0002032!5.00e-30!165;CL:0000837!5.00e-30!165;CL:0000988!3.61e-28!182;CL:0002393!4.28e-09!9;CL:0002397!4.28e-09!9;CL:0000094!9.40e-07!8 | |ontology_enrichment_celltype=CL:0000766!3.05e-60!76;CL:0002194!4.50e-58!63;CL:0000576!4.50e-58!63;CL:0000040!4.50e-58!63;CL:0000559!4.50e-58!63;CL:0002057!5.07e-57!42;CL:0002009!9.94e-56!65;CL:0000839!2.69e-52!70;CL:0000860!3.47e-52!45;CL:0000557!2.66e-51!71;CL:0000763!7.65e-42!112;CL:0000049!7.65e-42!112;CL:0000738!8.45e-37!140;CL:0002087!3.06e-36!119;CL:0000037!3.62e-31!172;CL:0000566!3.62e-31!172;CL:0002031!3.87e-31!124;CL:0002032!5.00e-30!165;CL:0000837!5.00e-30!165;CL:0000988!3.61e-28!182;CL:0002393!4.28e-09!9;CL:0002397!4.28e-09!9;CL:0000094!9.40e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.65e-97;33!CL:0002057;3.65e-97;33!CL:0000473;1.84e-88;39!CL:0000234;1.84e-88;39!CL:0000576;1.51e-46;48!CL:0000766;5.57e-32;69!CL:0000763;3.39e-19;100!CL:0002087;3.18e-12;104!CL:0000738;8.56e-12;136!CL:0000235;7.67e-11;6!CL:0000988;2.41e-07;177!CL:0000775;5.84e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.39e-99,48;CL:0000234,1.39e-99,48;CL:0000860,1.11e-89,42;CL:0002057,1.11e-89,42;CL:0002194,4.65e-78,59;CL:0000576,4.65e-78,59;CL:0000040,4.65e-78,59;CL:0000559,4.65e-78,59;CL:0002009,2.79e-75,61;CL:0000766,3.33e-75,72;CL:0000839,4.63e-69,66;CL:0000557,6.31e-68,67;CL:0000763,1.46e-47,108;CL:0000049,1.46e-47,108;CL:0002087,3.66e-41,115;CL:0000738,1.90e-40,136;CL:0002031,7.60e-37,120;CL:0000037,3.96e-31,168;CL:0002032,5.19e-31,161;CL:0000837,5.19e-31,161;CL:0000988,4.13e-29,177;CL:0000134,7.45e-12,354;CL:0002320,1.89e-11,361;CL:0000235,6.14e-11,6;CL:0000219,5.04e-10,386;CL:0000048,2.77e-08,427;CL:0000723,4.81e-08,433;CL:0000034,9.82e-08,441;CL:0000775,5.60e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.99e-64;42!CL:0000049;1.28e-14;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.27e-53!102;UBERON:0003061!4.27e-53!102;UBERON:0002193!3.89e-48!112;UBERON:0002371!1.80e-43!80;UBERON:0001474!3.61e-39!86;UBERON:0004765!1.09e-30!101;UBERON:0001434!1.09e-30!101;UBERON:0002405!2.12e-29!115;UBERON:0003081!2.07e-17!216;UBERON:0002204!4.72e-12!167;UBERON:0000178!2.58e-10!15;UBERON:0000179!2.58e-10!15;UBERON:0000463!2.58e-10!15 | |ontology_enrichment_uberon=UBERON:0002390!4.27e-53!102;UBERON:0003061!4.27e-53!102;UBERON:0002193!3.89e-48!112;UBERON:0002371!1.80e-43!80;UBERON:0001474!3.61e-39!86;UBERON:0004765!1.09e-30!101;UBERON:0001434!1.09e-30!101;UBERON:0002405!2.12e-29!115;UBERON:0003081!2.07e-17!216;UBERON:0002204!4.72e-12!167;UBERON:0000178!2.58e-10!15;UBERON:0000179!2.58e-10!15;UBERON:0000463!2.58e-10!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.58e-09;15!UBERON:0000179;2.58e-09;15!UBERON:0000463;2.58e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.79e-62,98;UBERON:0003061,1.79e-62,98;UBERON:0002371,4.83e-59,76;UBERON:0002193,6.17e-56,108;UBERON:0001474,3.44e-54,82;UBERON:0004765,1.03e-48,90;UBERON:0002405,6.70e-47,93;UBERON:0001434,4.35e-43,100;UBERON:0003081,9.23e-26,203;UBERON:0002204,1.13e-22,167;UBERON:0000926,2.01e-15,315;UBERON:0004120,2.01e-15,315;UBERON:0006603,2.01e-15,315;UBERON:0002384,6.75e-11,371;UBERON:0000178,3.52e-09,15;UBERON:0000179,3.52e-09,15;UBERON:0000463,3.52e-09,15 | |||
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|short_description=p8@PTAFR | |short_description=p8@PTAFR | ||
}} | }} |
Latest revision as of 09:45, 17 September 2015
Short description: | p8@PTAFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PTAFR_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 207bp_to_AB464653, AY275466, BT009801, CU687620, DQ891716, DQ894893, EU832802, GQ129382, L07334_5end |
EntrezGene: | PTAFR |
HGNC: | 9582 |
UniProt: | P25105 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.39e-99 | 48 |
phagocyte | 1.39e-99 | 48 |
classical monocyte | 1.11e-89 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.11e-89 | 42 |
monopoietic cell | 4.65e-78 | 59 |
monocyte | 4.65e-78 | 59 |
monoblast | 4.65e-78 | 59 |
promonocyte | 4.65e-78 | 59 |
macrophage dendritic cell progenitor | 2.79e-75 | 61 |
myeloid leukocyte | 3.33e-75 | 72 |
myeloid lineage restricted progenitor cell | 4.63e-69 | 66 |
granulocyte monocyte progenitor cell | 6.31e-68 | 67 |
myeloid cell | 1.46e-47 | 108 |
common myeloid progenitor | 1.46e-47 | 108 |
nongranular leukocyte | 3.66e-41 | 115 |
leukocyte | 1.90e-40 | 136 |
hematopoietic lineage restricted progenitor cell | 7.60e-37 | 120 |
hematopoietic stem cell | 3.96e-31 | 168 |
hematopoietic oligopotent progenitor cell | 5.19e-31 | 161 |
hematopoietic multipotent progenitor cell | 5.19e-31 | 161 |
hematopoietic cell | 4.13e-29 | 177 |
mesenchymal cell | 7.45e-12 | 354 |
connective tissue cell | 1.89e-11 | 361 |
macrophage | 6.14e-11 | 6 |
motile cell | 5.04e-10 | 386 |
multi fate stem cell | 2.77e-08 | 427 |
somatic stem cell | 4.81e-08 | 433 |
stem cell | 9.82e-08 | 441 |
neutrophil | 5.60e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.79e-62 | 98 |
blood island | 1.79e-62 | 98 |
bone marrow | 4.83e-59 | 76 |
hemolymphoid system | 6.17e-56 | 108 |
bone element | 3.44e-54 | 82 |
skeletal element | 1.03e-48 | 90 |
immune system | 6.70e-47 | 93 |
skeletal system | 4.35e-43 | 100 |
lateral plate mesoderm | 9.23e-26 | 203 |
musculoskeletal system | 1.13e-22 | 167 |
mesoderm | 2.01e-15 | 315 |
mesoderm-derived structure | 2.01e-15 | 315 |
presumptive mesoderm | 2.01e-15 | 315 |
connective tissue | 6.75e-11 | 371 |
blood | 3.52e-09 | 15 |
haemolymphatic fluid | 3.52e-09 | 15 |
organism substance | 3.52e-09 | 15 |