FFCP PHASE1:Hg19::chr9:36400857..36400902,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:36400857..36400902,-
|short_description=p2@RNF38
|description=CAGE_peak_2_at_RNF38_5end
|association_with_transcript=0bp_to_ENST00000377877_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=152006 | |EntrezGene=152006 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18052 | |HGNC=18052 | ||
|TSSclassifier=strong | |||
|UniProt=B1AM81 | |UniProt=B1AM81 | ||
|association_with_transcript=0bp_to_ENST00000377877_5end | |||
|cluster_id=chr9:36400857..36400902,- | |||
|description=CAGE_peak_2_at_RNF38_5end | |||
|id=chr9:36400857..36400902,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.62e-33!115;UBERON:0001049!5.69e-16!57;UBERON:0005068!5.69e-16!57;UBERON:0006241!5.69e-16!57;UBERON:0007135!5.69e-16!57;UBERON:0003080!2.10e-15!42;UBERON:0002616!2.43e-15!59;UBERON:0001893!2.85e-15!34;UBERON:0002780!6.77e-15!41;UBERON:0001890!6.77e-15!41;UBERON:0006240!6.77e-15!41;UBERON:0000073!9.32e-15!94;UBERON:0001016!9.32e-15!94;UBERON:0005743!9.71e-15!86;UBERON:0002791!1.07e-14!33;UBERON:0001017!1.31e-14!82;UBERON:0001869!1.56e-14!32;UBERON:0000955!1.59e-14!69;UBERON:0006238!1.59e-14!69;UBERON:0002020!8.37e-14!34;UBERON:0003528!8.37e-14!34;UBERON:0003075!2.80e-13!86;UBERON:0007284!2.80e-13!86;UBERON:0002346!7.40e-13!90;UBERON:0003056!6.34e-12!61;UBERON:0000956!9.18e-12!25;UBERON:0000203!9.18e-12!25;UBERON:0004121!1.40e-10!169;UBERON:0000924!1.91e-10!173;UBERON:0006601!1.91e-10!173;UBERON:0002619!2.36e-10!22;UBERON:0000153!2.37e-10!129;UBERON:0007811!2.37e-10!129;UBERON:0001950!6.22e-10!20;UBERON:0000033!1.53e-09!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.46e-13;34!UBERON:0001869;1.67e-13;32!UBERON:0002791;2.08e-13;32!UBERON:0003528;1.79e-12;34!UBERON:0002020;1.79e-12;34!UBERON:0000956;5.00e-12;25!UBERON:0000203;5.00e-12;25!UBERON:0002780;3.47e-11;41!UBERON:0001890;3.47e-11;41!UBERON:0002619;1.49e-10;22!UBERON:0000073;3.10e-10;53!UBERON:0002616;3.10e-10;53!UBERON:0001950;4.48e-10;20!UBERON:0007023;4.92e-09;114!UBERON:0000955;4.82e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.26e-32,114;UBERON:0000073,2.58e-16,53;UBERON:0002616,2.58e-16,53;UBERON:0001049,1.43e-15,56;UBERON:0005068,1.43e-15,56;UBERON:0006241,1.43e-15,56;UBERON:0007135,1.43e-15,56;UBERON:0001893,2.33e-15,34;UBERON:0002780,5.58e-15,41;UBERON:0001890,5.58e-15,41;UBERON:0003080,5.58e-15,41;UBERON:0006240,5.58e-15,41;UBERON:0001869,1.30e-14,32;UBERON:0001017,1.96e-14,81;UBERON:0001016,2.36e-14,89;UBERON:0002791,2.72e-14,32;UBERON:0000955,3.02e-14,68;UBERON:0006238,3.02e-14,68;UBERON:0003528,7.00e-14,34;UBERON:0002020,7.00e-14,34;UBERON:0003075,3.27e-13,82;UBERON:0007284,3.27e-13,82;UBERON:0002346,9.06e-13,86;UBERON:0003056,6.82e-12,61;UBERON:0000956,7.91e-12,25;UBERON:0000203,7.91e-12,25;UBERON:0002619,2.08e-10,22;UBERON:0004121,3.54e-10,171;UBERON:0000924,3.54e-10,171;UBERON:0006601,3.54e-10,171;UBERON:0001950,5.51e-10,20;UBERON:0010371,1.68e-08,104 | |||
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| ||
|short_description=p2@RNF38 | |||
}} | }} |
Latest revision as of 09:49, 17 September 2015
Short description: | p2@RNF38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF38_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000377877_5end |
EntrezGene: | RNF38 |
HGNC: | 18052 |
UniProt: | B1AM81 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.26e-32 | 114 |
regional part of nervous system | 2.58e-16 | 53 |
regional part of brain | 2.58e-16 | 53 |
neural tube | 1.43e-15 | 56 |
neural rod | 1.43e-15 | 56 |
future spinal cord | 1.43e-15 | 56 |
neural keel | 1.43e-15 | 56 |
telencephalon | 2.33e-15 | 34 |
regional part of forebrain | 5.58e-15 | 41 |
forebrain | 5.58e-15 | 41 |
anterior neural tube | 5.58e-15 | 41 |
future forebrain | 5.58e-15 | 41 |
cerebral hemisphere | 1.30e-14 | 32 |
central nervous system | 1.96e-14 | 81 |
nervous system | 2.36e-14 | 89 |
regional part of telencephalon | 2.72e-14 | 32 |
brain | 3.02e-14 | 68 |
future brain | 3.02e-14 | 68 |
brain grey matter | 7.00e-14 | 34 |
gray matter | 7.00e-14 | 34 |
neural plate | 3.27e-13 | 82 |
presumptive neural plate | 3.27e-13 | 82 |
neurectoderm | 9.06e-13 | 86 |
pre-chordal neural plate | 6.82e-12 | 61 |
cerebral cortex | 7.91e-12 | 25 |
pallium | 7.91e-12 | 25 |
regional part of cerebral cortex | 2.08e-10 | 22 |
ectoderm-derived structure | 3.54e-10 | 171 |
ectoderm | 3.54e-10 | 171 |
presumptive ectoderm | 3.54e-10 | 171 |
neocortex | 5.51e-10 | 20 |
ecto-epithelium | 1.68e-08 | 104 |