FFCP PHASE1:Hg19::chr3:196439065..196439167,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84984 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28209 | |||
|TSSclassifier=strong | |||
|UniProt=A8MX07,Q96LK0 | |||
|association_with_transcript=0bp_to_ENST00000399942,ENST00000409690,NM_032898,uc011btw.1_5end | |||
|cluster_id=chr3:196439065..196439167,- | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_CEP19_5end | |||
|id=chr3:196439065..196439167,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.34e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000955!1.75e-21!69;UBERON:0006238!1.75e-21!69;UBERON:0001049!8.34e-21!57;UBERON:0005068!8.34e-21!57;UBERON:0006241!8.34e-21!57;UBERON:0007135!8.34e-21!57;UBERON:0001017!1.16e-20!82;UBERON:0000073!2.67e-20!94;UBERON:0001016!2.67e-20!94;UBERON:0002616!9.18e-20!59;UBERON:0005743!4.45e-19!86;UBERON:0002780!1.12e-17!41;UBERON:0001890!1.12e-17!41;UBERON:0006240!1.12e-17!41;UBERON:0003080!1.87e-17!42;UBERON:0002020!1.17e-15!34;UBERON:0003528!1.17e-15!34;UBERON:0001893!1.49e-15!34;UBERON:0001869!3.56e-15!32;UBERON:0002791!5.63e-15!33;UBERON:0000153!2.30e-14!129;UBERON:0007811!2.30e-14!129;UBERON:0003075!2.77e-14!86;UBERON:0007284!2.77e-14!86;UBERON:0007023!5.55e-14!115;UBERON:0002346!9.56e-14!90;UBERON:0000033!2.12e-13!123;UBERON:0002619!9.78e-13!22;UBERON:0004121!1.16e-12!169;UBERON:0000924!1.94e-12!173;UBERON:0006601!1.94e-12!173;UBERON:0000956!8.63e-12!25;UBERON:0000203!8.63e-12!25;UBERON:0003056!1.13e-11!61;UBERON:0001950!1.16e-11!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.80e-13;32!UBERON:0001893;2.41e-13;34!UBERON:0003528;3.11e-13;34!UBERON:0002020;3.11e-13;34!UBERON:0002791;3.23e-13;32!UBERON:0002619;5.57e-13;22!UBERON:0002780;8.06e-13;41!UBERON:0001890;8.06e-13;41!UBERON:0000073;6.21e-12;53!UBERON:0002616;6.21e-12;53!UBERON:0001950;7.06e-12;20!UBERON:0000956;1.42e-11;25!UBERON:0000203;1.42e-11;25!UBERON:0000955;5.93e-10;68!UBERON:0001017;1.28e-09;75!UBERON:0001016;1.65e-08;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.55e-22,89;UBERON:0000955,1.25e-21,68;UBERON:0006238,1.25e-21,68;UBERON:0001049,4.46e-21,56;UBERON:0005068,4.46e-21,56;UBERON:0006241,4.46e-21,56;UBERON:0007135,4.46e-21,56;UBERON:0001017,1.12e-20,81;UBERON:0000073,1.57e-20,53;UBERON:0002616,1.57e-20,53;UBERON:0002780,9.68e-18,41;UBERON:0001890,9.68e-18,41;UBERON:0003080,9.68e-18,41;UBERON:0006240,9.68e-18,41;UBERON:0003528,1.02e-15,34;UBERON:0002020,1.02e-15,34;UBERON:0001893,1.31e-15,34;UBERON:0001869,3.14e-15,32;UBERON:0002791,6.84e-15,32;UBERON:0003075,2.36e-14,82;UBERON:0007284,2.36e-14,82;UBERON:0002346,8.71e-14,86;UBERON:0007023,1.83e-13,114;UBERON:0002619,8.83e-13,22;UBERON:0004121,1.82e-12,171;UBERON:0000924,1.82e-12,171;UBERON:0006601,1.82e-12,171;UBERON:0010371,5.19e-12,104;UBERON:0003056,5.44e-12,61;UBERON:0000956,7.86e-12,25;UBERON:0000203,7.86e-12,25;UBERON:0001950,1.05e-11,20;UBERON:0010314,4.64e-10,132 | |||
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| |||
|short_description=p1@CEP19 | |||
}} |
Latest revision as of 15:58, 17 September 2015
Short description: | p1@CEP19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CEP19_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000399942, ENST00000409690, NM_032898, uc011btw.1_5end |
EntrezGene: | CEP19 |
HGNC: | 28209 |
UniProt: | A8MX07Q96LK0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 7.55e-22 | 89 |
brain | 1.25e-21 | 68 |
future brain | 1.25e-21 | 68 |
neural tube | 4.46e-21 | 56 |
neural rod | 4.46e-21 | 56 |
future spinal cord | 4.46e-21 | 56 |
neural keel | 4.46e-21 | 56 |
central nervous system | 1.12e-20 | 81 |
regional part of nervous system | 1.57e-20 | 53 |
regional part of brain | 1.57e-20 | 53 |
regional part of forebrain | 9.68e-18 | 41 |
forebrain | 9.68e-18 | 41 |
anterior neural tube | 9.68e-18 | 41 |
future forebrain | 9.68e-18 | 41 |
brain grey matter | 1.02e-15 | 34 |
gray matter | 1.02e-15 | 34 |
telencephalon | 1.31e-15 | 34 |
cerebral hemisphere | 3.14e-15 | 32 |
regional part of telencephalon | 6.84e-15 | 32 |
neural plate | 2.36e-14 | 82 |
presumptive neural plate | 2.36e-14 | 82 |
neurectoderm | 8.71e-14 | 86 |
adult organism | 1.83e-13 | 114 |
regional part of cerebral cortex | 8.83e-13 | 22 |
ectoderm-derived structure | 1.82e-12 | 171 |
ectoderm | 1.82e-12 | 171 |
presumptive ectoderm | 1.82e-12 | 171 |
ecto-epithelium | 5.19e-12 | 104 |
pre-chordal neural plate | 5.44e-12 | 61 |
cerebral cortex | 7.86e-12 | 25 |
pallium | 7.86e-12 | 25 |
neocortex | 1.05e-11 | 20 |
structure with developmental contribution from neural crest | 4.64e-10 | 132 |