FFCP PHASE1:Hg19::chr1:35246802..35246823,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:35246802..35246823,+ to FFCP PHASE1:Hg19::chr1:35246802..35246823,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2707 | |EntrezGene=2707 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4285 | |HGNC=4285 | ||
|TSSclassifier=strong | |||
|UniProt=O75712 | |UniProt=O75712 | ||
|association_with_transcript=12bp_to_ENST00000373366,NM_024009,uc001bxx.2_5end | |||
|cluster_id=chr1:35246802..35246823,+ | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_1_at_GJB3_5end | |||
|id=chr1:35246802..35246823,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.38e-47!254;CL:0002076!1.59e-29!43;CL:0000223!2.82e-21!59;CL:0002251!8.60e-13!21;CL:0002368!4.60e-12!13;CL:0002159!1.14e-08!13;CL:0002202!2.34e-08!9;CL:0002632!2.34e-08!9;CL:0000076!6.73e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.62e-26;42!CL:0002251;1.03e-16;20!CL:0002368;5.66e-16;13!CL:0002202;6.03e-11;9!CL:0002632;6.03e-11;9!CL:0002159;1.11e-10;14!CL:1000507;1.71e-10;10!CL:1000494;1.71e-10;10!CL:0000349;5.68e-09;19!CL:1000449;4.56e-08;15!CL:0000244;6.89e-08;4!CL:0000731;6.89e-08;4!CL:0000622;1.64e-07;5!CL:1000497;7.55e-07;17!CL:0002518;7.55e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.56e-52,253;CL:0002076,2.10e-36,42;CL:0000223,2.35e-26,58;CL:0002251,8.35e-17,20;CL:0002368,5.25e-16,13;CL:0002202,5.60e-11,9;CL:0002632,5.60e-11,9;CL:0002159,1.11e-10,14;CL:1000507,1.78e-10,10;CL:1000494,1.78e-10,10;CL:0000349,5.68e-09,19;CL:1000449,4.70e-08,15;CL:0000244,6.89e-08,4;CL:0000731,6.89e-08,4;CL:0000622,1.65e-07,5;CL:1000497,7.75e-07,17;CL:0002518,7.75e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;5.07e-14;58!UBERON:0008947;5.05e-09;29 | |||
|ontology_enrichment_disease=DOID:305!4.29e-24!106;DOID:0050687!1.04e-13!143;DOID:1749!8.04e-12!14;DOID:299!3.36e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.20e-15;14!DOID:299;1.23e-12;25!DOID:305;1.07e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.59e-27,106;DOID:0050687,8.32e-16,143;DOID:1749,1.15e-15,14;DOID:299,1.12e-12,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.99e-24!169;UBERON:0000925!1.99e-24!169;UBERON:0006595!1.99e-24!169;UBERON:0001004!1.07e-17!72;UBERON:0000077!9.03e-17!130;UBERON:0001007!1.87e-16!155;UBERON:0001555!1.87e-16!155;UBERON:0007026!1.87e-16!155;UBERON:0000065!2.61e-15!53;UBERON:0004921!9.78e-14!129;UBERON:0004185!9.78e-14!129;UBERON:0008947!1.94e-12!38;UBERON:0003258!1.94e-12!38;UBERON:0000464!3.45e-12!104;UBERON:0000072!5.29e-12!46;UBERON:0005631!1.21e-11!14;UBERON:0000158!1.21e-11!14;UBERON:0005156!8.01e-11!59;UBERON:0000990!8.01e-11!59;UBERON:0001041!4.27e-10!98;UBERON:0000161!5.09e-10!35;UBERON:0001008!5.43e-10!45;UBERON:0000466!7.56e-10!126;UBERON:0006554!1.73e-09!44;UBERON:0003133!2.43e-09!48;UBERON:0003100!5.02e-09!41;UBERON:0003124!6.86e-09!7;UBERON:0003064!8.09e-09!37;UBERON:0004175!1.11e-08!25;UBERON:0005911!1.40e-08!82;UBERON:0000062!1.76e-08!511;UBERON:0000064!2.08e-08!219;UBERON:0003975!2.34e-08!22;UBERON:0005795!3.21e-08!22;UBERON:0001737!3.50e-08!9;UBERON:0000995!8.64e-08!21;UBERON:0005153!1.08e-07!37;UBERON:0001557!1.89e-07!19;UBERON:0003104!2.29e-07!238;UBERON:0009142!2.29e-07!238;UBERON:0000344!2.68e-07!12;UBERON:0003134!2.79e-07!37;UBERON:0000474!2.79e-07!37;UBERON:0005910!2.80e-07!6;UBERON:0000365!4.15e-07!5;UBERON:0005178!4.56e-07!34;UBERON:0002224!4.56e-07!34;UBERON:0007196!5.25e-07!14;UBERON:0001558!5.25e-07!14;UBERON:0000166!5.30e-07!21;UBERON:0000922!5.43e-07!612;UBERON:0000478!6.17e-07!24;UBERON:0000058!7.52e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;1.45e-13;37!UBERON:0000065;2.92e-13;44!UBERON:0001004;3.76e-11;65!UBERON:0001737;1.66e-10;9!UBERON:0001557;1.66e-10;9!UBERON:0004211;1.71e-10;10!UBERON:0009773;1.71e-10;10!UBERON:0001231;1.71e-10;10!UBERON:0004810;1.71e-10;10!UBERON:0005631;4.31e-10;10!UBERON:0000158;4.31e-10;10!UBERON:0006554;2.92e-09;30!UBERON:0001008;2.92e-09;30!UBERON:0005911;3.36e-09;36!UBERON:0000365;4.42e-09;5!UBERON:0004807;6.68e-09;22!UBERON:0000478;7.65e-09;24!UBERON:0007196;9.99e-09;15!UBERON:0001558;9.99e-09;15!UBERON:0000344;3.81e-08;20!UBERON:0000486;4.01e-08;12!UBERON:0006555;4.56e-08;15!UBERON:0004819;4.56e-08;15!UBERON:0001285;4.56e-08;15!UBERON:0007684;4.56e-08;15!UBERON:0005178;6.18e-08;34!UBERON:0002224;6.18e-08;34!UBERON:0005910;1.95e-07;6!UBERON:0001987;2.30e-07;4!UBERON:0005181;2.76e-07;35!UBERON:0000161;5.75e-07;19!UBERON:0000166;5.75e-07;19!UBERON:0002294;6.45e-07;7!UBERON:0001173;6.45e-07;7!UBERON:0000165;8.16e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.83e-28,160;UBERON:0000925,3.83e-28,160;UBERON:0006595,3.83e-28,160;UBERON:0001004,4.04e-21,74;UBERON:0001007,9.18e-19,145;UBERON:0001555,9.18e-19,145;UBERON:0007026,9.18e-19,145;UBERON:0000065,2.51e-18,54;UBERON:0000072,5.44e-16,47;UBERON:0005631,1.27e-15,14;UBERON:0000158,1.27e-15,14;UBERON:0008947,2.20e-15,38;UBERON:0003258,2.20e-15,38;UBERON:0004921,3.46e-15,118;UBERON:0001008,1.93e-14,48;UBERON:0006554,9.58e-14,47;UBERON:0001041,1.26e-13,87;UBERON:0000161,9.89e-12,36;UBERON:0003124,1.70e-11,7;UBERON:0001737,1.54e-10,9;UBERON:0004810,1.78e-10,10;UBERON:0000365,4.35e-09,5;UBERON:0001557,6.38e-09,19;UBERON:0005911,6.68e-09,82;UBERON:0000478,7.46e-09,24;UBERON:0007196,9.72e-09,15;UBERON:0001558,9.72e-09,15;UBERON:0005153,9.96e-09,37;UBERON:0005178,1.29e-08,34;UBERON:0002224,1.29e-08,34;UBERON:0005181,3.07e-08,35;UBERON:0000344,3.50e-08,20;UBERON:0003100,4.64e-08,41;UBERON:0004211,4.70e-08,15;UBERON:0009773,4.70e-08,15;UBERON:0001231,4.70e-08,15;UBERON:0001285,4.70e-08,15;UBERON:0007684,4.70e-08,15;UBERON:0004208,4.70e-08,15;UBERON:0000166,4.78e-08,22;UBERON:0003975,4.99e-08,22;UBERON:0004923,5.70e-08,66;UBERON:0003102,6.71e-08,99;UBERON:0005157,7.99e-08,47;UBERON:0005910,1.93e-07,6;UBERON:0006555,2.09e-07,16;UBERON:0004819,2.09e-07,16;UBERON:0001987,2.18e-07,4;UBERON:0004340,2.18e-07,4;UBERON:0005177,2.35e-07,101;UBERON:0000995,2.49e-07,21;UBERON:0005795,7.20e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,11.3037610790694,72.5713214691325,76.6729216176905,74.6460548386524,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.464448369948228,113.088810610908,137.952310800439,82.8248982773604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0.0654895377488563,80.8735540009444,55.9884508604488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,52.3312862571041,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,72.6660807893996,42.5483948121702,42.7338847129616,0,0,0.116193942869518,0.518305275076852,0.756962552626885,0,0,0,0,0,0,4.96888560167344,7.58631105351458,7.23033089650446,5.73528658208448,5.66486554640256,6.16903609688851,3.10112008768378,2.74710051175484,4.61696588335668,0,0,0,0,0,0,0,0,1.59884970106048,0,112.823293400067,105.657648062162,123.851694011129,54.1642404177398,0,0,0,0,0,0,0,0,0,0,0,0,0,50.6162703528596,52.0744597416465,36.4361999912933,64.6612533914565,68.2989755507811,142.618356649459,0,0,0,0.144119953416961,0,0.317489471460845,0,0,5.13217338068116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0,1.50051156317903,0,0,0,0,0,0,0,3.10419213877515,0,0.184369168541703,0,0,0,0,0,0,118.219752864041,149.791895559447,139.401925224983,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,53.1342146303705,94.6592566261014,0,0,0,25.7183779357225,25.4150612444569,17.2556949218908,4.38417673959782,9.92185311593032,0,0,0,0,0,2.50844886927427,30.0754002193145,40.7227244375075,9.40273969833149,0,0,0.256450125116389,0,0,1.03041011647722,0,0,67.1890679455522,78.6572897704191,0,0,0,0,0,0,0,0,0,37.1891059562201,34.5942121257191,16.5896526242959,31.8647009694982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,70.9156970787024,93.8423185750103,81.6682386459919,0.564862804660675,128.290601056027,126.353606750719,121.499862069049,92.5785302834047,0,0,0,0,0,0,0,0,0,0,45.5774801724719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8071081061233,0,0,0,0,221.554881836576,21.6784217007826,241.735472552096,0,0,0,0,0,0,0.552567831062295,0,0.409074730008619,0,0,25.4327433746935,5.01259289091706,0,2.17015492401254,0,0,0,0,0,1.04171104434093,0,0,5.00691172456199,1.77977555204936,2.36387681767936,0,0,0,0,0,0,0,0,0,0.544692317594951,12.6875607293529,1.46205491157214,0,0,0,0,100.804366475287,18.0447259001669,57.5677558100125,0,0,0,0,0,0,0,0,0,5.38668266925187,0.141353071433941,0,0.995261931078505,0.442287822516696,0,0,0,0,0,0,0,0,21.3274434635978,0.242780379534093,0,0,0,0,0,0,0,0,0,0,1.13843818411917,0.138674673013139,1.56203764501618,31.7495367622584,66.2520562076864,0.52418000472609,0,6.4826741963687,3.21592995179216,6.07654382193748,7.17718722014304,0,0.677942222341597,0,0,0,20.3373438044195,7.21429382263803,1.06726497369676,3.9961921916426,8.78951544640046,0,0,6.62652070745489,0.745515213392595,13.9059480423909,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,4.99197501247478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275078873194468,0,0.899895566206002,0.77380195455795,0,25.8284709451435,0.157611414598396,0.104909176269996,0,0,30.8983467684307,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,27.4877858703502,0.320362237703084,0.471612915298998,0,0,0,0,37.6621342084407,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643324774124777,0,0.226705925512272,0,0.244736704506468,0,0.308801447160972,0.219284049578707,0.706756583783524,2.12205442098006,0,0,0.690860683462397,0,0,0,0,0.163565394255844,0,0.491545817507439,50.2922853593532,0,0,0,0,0,75.2551751530611,44.789562722374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.85181748008205,3.89300087047543,27.5142897782519,7.27811696747131,0,0,0,0.0752103283492573,0,0,0,4.58561369028271,40.9561358821215,0,0,0,0,0,0.548257766857182,1.48863353516788,0,6.89917109253815,0,0,0,0,5.9430588008968,0,0,0,0,3.19123370386714,11.9017600024514,1.49136876415977,0,4.20408244970683,0.913158720509496,0,0,0,0,0,0,0,9.73915971566273,6.99945756085195,2.07377898544228,0,0.118332000730565,0.170426809518315,0.423387050190929,15.1210533239073,3.41227024230752,3.82215575590973,1.90154234056247,4.51491074630118,5.24247077423759,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7132363163395,30.7018538392652,20.2208244056704,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,1.22386595690378,0.801652215796681,0.0918948995348449,0,0.0757786982182394,0.267964130156178,0,0,1.49263787330687,0.476128862927481,0,0.496597714366863,0.672791175483681,0,0,6.31378568901188,3.76456631193809,4.44523549896278,6.23983186916284,2.32862249582209,21.8974792563521,0.106727345877715,0,8.08426818959282,2.34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| ||
|short_description=p1@GJB3 | |||
}} | }} |
Latest revision as of 17:48, 17 September 2015
Short description: | p1@GJB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GJB3_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 12bp_to_ENST00000373366, NM_024009, uc001bxx.2_5end |
EntrezGene: | GJB3 |
HGNC: | 4285 |
UniProt: | O75712 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.56e-52 | 253 |
endo-epithelial cell | 2.10e-36 | 42 |
endodermal cell | 2.35e-26 | 58 |
epithelial cell of alimentary canal | 8.35e-17 | 20 |
respiratory epithelial cell | 5.25e-16 | 13 |
epithelial cell of tracheobronchial tree | 5.60e-11 | 9 |
epithelial cell of lower respiratory tract | 5.60e-11 | 9 |
general ecto-epithelial cell | 1.11e-10 | 14 |
kidney tubule cell | 1.78e-10 | 10 |
nephron tubule epithelial cell | 1.78e-10 | 10 |
extraembryonic cell | 5.68e-09 | 19 |
epithelial cell of nephron | 4.70e-08 | 15 |
transitional epithelial cell | 6.89e-08 | 4 |
urothelial cell | 6.89e-08 | 4 |
acinar cell | 1.65e-07 | 5 |
kidney cell | 7.75e-07 | 17 |
kidney epithelial cell | 7.75e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.59e-27 | 106 |
cell type cancer | 8.32e-16 | 143 |
squamous cell carcinoma | 1.15e-15 | 14 |
adenocarcinoma | 1.12e-12 | 25 |