FFCP PHASE1:Hg19::chr2:16081744..16081768,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=16911 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-40bp_to_ENST00000420452_5end | |||
|cluster_id=chr2:16081744..16081768,- | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_5_at_MYCNOS_5end | |||
|id=chr2:16081744..16081768,- | |||
|ontology_enrichment_celltype=CL:0000039!9.74e-19!7;CL:0000586!9.74e-19!7;CL:0002322!1.92e-11!5 | |||
|ontology_enrichment_celltype_v019=CL:0000333;1.82e-40;5!CL:0002321;5.05e-14;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,1.09e-08,41 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.87e-30;3!UBERON:0005425;4.59e-23;1!UBERON:0006238;5.31e-09;10 | |||
|ontology_enrichment_disease=DOID:3095!1.18e-18!22;DOID:2994!1.18e-18!22 | |||
|ontology_enrichment_disease_v019=DOID:169;7.10e-34;6!DOID:171;1.16e-20;10!DOID:3095;8.99e-10;22!DOID:2994;8.99e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,6.72e-34,6;DOID:171,1.12e-20,10;DOID:3095,8.86e-10,22;DOID:2994,8.86e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.60e-16!8;UBERON:0003135!1.43e-11!11;UBERON:0000073!6.78e-11!94;UBERON:0001016!6.78e-11!94;UBERON:0001017!7.27e-08!82;UBERON:0000013!8.85e-08!5;UBERON:0002410!8.85e-08!5;UBERON:0000991!1.13e-07!21;UBERON:0009196!1.13e-07!21;UBERON:0009117!1.13e-07!21;UBERON:0005564!1.13e-07!21;UBERON:0005743!2.42e-07!86;UBERON:0004176!2.81e-07!22;UBERON:0000010!3.16e-07!8;UBERON:0003101!3.52e-07!22;UBERON:0000079!3.52e-07!22;UBERON:0001950!5.18e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.82e-40;5!UBERON:0002410;1.82e-40;5!UBERON:0000010;1.63e-39;8!UBERON:0000941;4.59e-23;1!UBERON:0001785;4.59e-23;1!UBERON:0002464;4.59e-23;1!UBERON:0004904;4.59e-23;1!UBERON:0001021;4.59e-23;1!UBERON:0003714;3.06e-12;2!UBERON:0005162;3.06e-12;2!UBERON:0000122;3.06e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.70e-40,5;UBERON:0002410,1.70e-40,5;UBERON:0000010,1.63e-39,8;UBERON:0000941,5.13e-23,1;UBERON:0001785,5.13e-23,1;UBERON:0002464,5.13e-23,1;UBERON:0004904,5.13e-23,1;UBERON:0001021,5.13e-23,1;UBERON:0003902,5.13e-23,1;UBERON:0005425,5.13e-23,1;UBERON:0000966,1.13e-15,6;UBERON:0005388,1.13e-15,6;UBERON:0001802,1.13e-15,6;UBERON:0003714,3.24e-12,2;UBERON:0005162,3.24e-12,2;UBERON:0000122,3.24e-12,2;UBERON:0001016,1.17e-08,89;UBERON:0001781,9.63e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0.587200878669695,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.132529768321485,0.348581828608555,0.10366105501537,0,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0.159426272728822,0.399158742865633,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,1.99613798001194,0,0.0874599999961957,0,0,0,0,1.37897349296586,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0.23056390438806,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75524670866433,2.47997066212368,0,8.40914214078507,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0.252071696221718,0.0691572524642179,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0,0,0,0,0,0,0,7.42663975143815,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0.378499274505237,0.655593431782173,0,0.407955318967927,0.534434810531121,0.459474497674225,0.752122617877125,0.0757786982182394,0.535928260312357,0,0.103432995861895,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@MYCNOS | |||
}} |
Latest revision as of 19:23, 17 September 2015
Short description: | p5@MYCNOS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MYCNOS_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | -40bp_to_ENST00000420452_5end |
EntrezGene: | NA |
HGNC: | 16911 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 1.09e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.70e-40 | 5 |
autonomic nervous system | 1.70e-40 | 5 |
peripheral nervous system | 1.63e-39 | 8 |
cranial nerve II | 5.13e-23 | 1 |
cranial nerve | 5.13e-23 | 1 |
nerve trunk | 5.13e-23 | 1 |
nerve connecting eye with brain | 5.13e-23 | 1 |
nerve | 5.13e-23 | 1 |
retinal neural layer | 5.13e-23 | 1 |
presumptive neural retina | 5.13e-23 | 1 |
retina | 1.13e-15 | 6 |
photoreceptor array | 1.13e-15 | 6 |
posterior segment of eyeball | 1.13e-15 | 6 |
neural tissue | 3.24e-12 | 2 |
multi cell component structure | 3.24e-12 | 2 |
neuron projection bundle | 3.24e-12 | 2 |
nervous system | 1.17e-08 | 89 |
layer of retina | 9.63e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 6.72e-34 | 6 |
neuroectodermal tumor | 1.12e-20 | 10 |
germ cell and embryonal cancer | 8.86e-10 | 22 |
germ cell cancer | 8.86e-10 | 22 |