FFCP PHASE1:Hg19::chr15:45021183..45021189,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:45021183..45021189,+ to FFCP PHASE1:Hg19::chr15:45021183..45021189,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=140691 | |EntrezGene=140691 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17857 | |HGNC=17857 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000559390_5end | |||
|cluster_id=chr15:45021183..45021189,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_11_at_TRIM69_5end | |||
|id=chr15:45021183..45021189,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.87e-27!42;CL:0000860!3.49e-26!45;CL:0000738!2.57e-23!140;CL:0000557!4.13e-22!71;CL:0002031!1.04e-21!124;CL:0002009!2.21e-21!65;CL:0000766!9.82e-21!76;CL:0002087!3.99e-20!119;CL:0000839!8.74e-20!70;CL:0002194!1.61e-19!63;CL:0000576!1.61e-19!63;CL:0000040!1.61e-19!63;CL:0000559!1.61e-19!63;CL:0002032!4.32e-15!165;CL:0000837!4.32e-15!165;CL:0000037!4.49e-15!172;CL:0000566!4.49e-15!172;CL:0000988!1.41e-14!182;CL:0000763!1.10e-12!112;CL:0000049!1.10e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.85e-80;33!CL:0002057;7.85e-80;33!CL:0000473;1.93e-55;39!CL:0000234;1.93e-55;39!CL:0000576;2.07e-37;48!CL:0000766;4.07e-19;69!CL:0000763;7.27e-15;100!CL:0002087;6.21e-13;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.03e-70,42;CL:0002057,1.03e-70,42;CL:0000473,1.43e-61,48;CL:0000234,1.43e-61,48;CL:0002194,9.22e-49,59;CL:0000576,9.22e-49,59;CL:0000040,9.22e-49,59;CL:0000559,9.22e-49,59;CL:0002009,4.15e-47,61;CL:0000839,2.10e-43,66;CL:0000557,9.94e-43,67;CL:0000766,1.25e-39,72;CL:0002087,7.10e-27,115;CL:0000763,1.11e-25,108;CL:0000049,1.11e-25,108;CL:0002031,1.19e-25,120;CL:0000738,2.45e-22,136;CL:0002032,1.84e-18,161;CL:0000837,1.84e-18,161;CL:0000037,1.40e-17,168;CL:0000988,1.51e-16,177;CL:0000134,8.19e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.64e-51;42!UBERON:0005425;1.21e-10;1!CL:0000049;4.94e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;1.21e-10;1!DOID:0070004;1.21e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,1.77e-10,1;DOID:0070004,1.77e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.86e-20!80;UBERON:0002390!4.37e-20!102;UBERON:0003061!4.37e-20!102;UBERON:0001474!7.17e-19!86;UBERON:0002193!1.58e-17!112;UBERON:0004765!1.06e-14!101;UBERON:0001434!1.06e-14!101;UBERON:0002405!4.40e-14!115;UBERON:0003081!8.08e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.21e-10;1!UBERON:0001785;1.21e-10;1!UBERON:0002464;1.21e-10;1!UBERON:0004904;1.21e-10;1!UBERON:0001021;1.21e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.86e-42,76;UBERON:0001474,1.28e-38,82;UBERON:0004765,5.42e-35,90;UBERON:0002405,8.61e-34,93;UBERON:0002390,5.97e-32,98;UBERON:0003061,5.97e-32,98;UBERON:0001434,2.89e-31,100;UBERON:0002193,8.96e-29,108;UBERON:0002204,1.06e-17,167;UBERON:0003081,4.48e-14,203;UBERON:0000941,1.21e-10,1;UBERON:0001785,1.21e-10,1;UBERON:0002464,1.21e-10,1;UBERON:0004904,1.21e-10,1;UBERON:0001021,1.21e-10,1;UBERON:0003902,1.21e-10,1;UBERON:0005425,1.21e-10,1;UBERON:0000926,4.92e-08,315;UBERON:0004120,4.92e-08,315;UBERON:0006603,4.92e-08,315 | |||
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| ||
|short_description=p11@TRIM69 | |||
}} | }} |
Latest revision as of 19:24, 17 September 2015
Short description: | p11@TRIM69 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_TRIM69_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000559390_5end |
EntrezGene: | TRIM69 |
HGNC: | 17857 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.03e-70 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.03e-70 | 42 |
defensive cell | 1.43e-61 | 48 |
phagocyte | 1.43e-61 | 48 |
monopoietic cell | 9.22e-49 | 59 |
monocyte | 9.22e-49 | 59 |
monoblast | 9.22e-49 | 59 |
promonocyte | 9.22e-49 | 59 |
macrophage dendritic cell progenitor | 4.15e-47 | 61 |
myeloid lineage restricted progenitor cell | 2.10e-43 | 66 |
granulocyte monocyte progenitor cell | 9.94e-43 | 67 |
myeloid leukocyte | 1.25e-39 | 72 |
nongranular leukocyte | 7.10e-27 | 115 |
myeloid cell | 1.11e-25 | 108 |
common myeloid progenitor | 1.11e-25 | 108 |
hematopoietic lineage restricted progenitor cell | 1.19e-25 | 120 |
leukocyte | 2.45e-22 | 136 |
hematopoietic oligopotent progenitor cell | 1.84e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.84e-18 | 161 |
hematopoietic stem cell | 1.40e-17 | 168 |
hematopoietic cell | 1.51e-16 | 177 |
mesenchymal cell | 8.19e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.86e-42 | 76 |
bone element | 1.28e-38 | 82 |
skeletal element | 5.42e-35 | 90 |
immune system | 8.61e-34 | 93 |
hematopoietic system | 5.97e-32 | 98 |
blood island | 5.97e-32 | 98 |
skeletal system | 2.89e-31 | 100 |
hemolymphoid system | 8.96e-29 | 108 |
musculoskeletal system | 1.06e-17 | 167 |
lateral plate mesoderm | 4.48e-14 | 203 |
cranial nerve II | 1.21e-10 | 1 |
cranial nerve | 1.21e-10 | 1 |
nerve trunk | 1.21e-10 | 1 |
nerve connecting eye with brain | 1.21e-10 | 1 |
nerve | 1.21e-10 | 1 |
retinal neural layer | 1.21e-10 | 1 |
presumptive neural retina | 1.21e-10 | 1 |
mesoderm | 4.92e-08 | 315 |
mesoderm-derived structure | 4.92e-08 | 315 |
presumptive mesoderm | 4.92e-08 | 315 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 1.77e-10 | 1 |
myeloma | 1.77e-10 | 1 |