FFCP PHASE1:Hg19::chr19:40030784..40030808,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:40030784..40030808,-
|short_description=p1@EID2
|description=CAGE_peak_1_at_EID2_5end
|association_with_transcript=29bp_to_ENST00000539700,NM_153232,uc002...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=163126 | |EntrezGene=163126 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28292 | |HGNC=28292 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYE7,Q8N6I1 | |UniProt=F5GYE7,Q8N6I1 | ||
|association_with_transcript=29bp_to_ENST00000539700,NM_153232,uc002oma.2_5end | |||
|cluster_id=chr19:40030784..40030808,- | |||
|description=CAGE_peak_1_at_EID2_5end | |||
|id=chr19:40030784..40030808,- | |||
|ontology_enrichment_celltype=CL:0000055!2.85e-08!180;CL:0000057!4.80e-08!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.26e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!3.95e-13!86;UBERON:0001017!8.05e-12!82;UBERON:0000955!1.06e-11!69;UBERON:0006238!1.06e-11!69;UBERON:0003075!4.37e-11!86;UBERON:0007284!4.37e-11!86;UBERON:0003056!5.06e-11!61;UBERON:0000073!7.22e-11!94;UBERON:0001016!7.22e-11!94;UBERON:0002616!3.86e-10!59;UBERON:0000033!1.09e-09!123;UBERON:0002346!1.16e-09!90;UBERON:0002780!7.79e-09!41;UBERON:0001890!7.79e-09!41;UBERON:0006240!7.79e-09!41;UBERON:0000956!8.63e-09!25;UBERON:0000203!8.63e-09!25;UBERON:0001049!2.56e-08!57;UBERON:0005068!2.56e-08!57;UBERON:0006241!2.56e-08!57;UBERON:0007135!2.56e-08!57;UBERON:0003080!2.66e-08!42;UBERON:0001869!3.16e-08!32;UBERON:0000153!4.75e-08!129;UBERON:0007811!4.75e-08!129;UBERON:0001893!6.00e-08!34;UBERON:0002619!6.91e-08!22;UBERON:0000119!8.89e-08!312;UBERON:0001950!9.37e-08!20;UBERON:0000475!1.10e-07!365;UBERON:0002791!1.83e-07!33;UBERON:0002020!3.33e-07!34;UBERON:0003528!3.33e-07!34;UBERON:0000483!3.95e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;7.46e-09;25!UBERON:0000203;7.46e-09;25!UBERON:0002619;6.00e-08;22!UBERON:0001950;7.67e-08;20!UBERON:0001869;1.49e-07;32!UBERON:0001893;3.30e-07;34!UBERON:0002791;4.80e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.87e-12,81;UBERON:0000955,3.38e-12,68;UBERON:0006238,3.38e-12,68;UBERON:0003056,5.13e-11,61;UBERON:0003075,1.23e-10,82;UBERON:0007284,1.23e-10,82;UBERON:0001016,4.77e-10,89;UBERON:0000073,1.34e-09,53;UBERON:0002616,1.34e-09,53;UBERON:0010314,2.52e-09,132;UBERON:0002346,3.23e-09,86;UBERON:0002780,7.79e-09,41;UBERON:0001890,7.79e-09,41;UBERON:0003080,7.79e-09,41;UBERON:0006240,7.79e-09,41;UBERON:0000956,8.63e-09,25;UBERON:0000203,8.63e-09,25;UBERON:0001049,9.30e-09,56;UBERON:0005068,9.30e-09,56;UBERON:0006241,9.30e-09,56;UBERON:0007135,9.30e-09,56;UBERON:0001869,3.16e-08,32;UBERON:0001893,6.00e-08,34;UBERON:0002619,6.91e-08,22;UBERON:0001950,9.36e-08,20;UBERON:0002791,1.18e-07,32;UBERON:0000119,1.52e-07,309;UBERON:0003528,3.33e-07,34;UBERON:0002020,3.33e-07,34;UBERON:0010371,4.63e-07,104;UBERON:0000483,6.58e-07,306 | |||
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| ||
|short_description=p1@EID2 | |||
}} | }} |
Latest revision as of 00:00, 18 September 2015
Short description: | p1@EID2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EID2_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000539700, NM_153232, uc002oma.2_5end |
EntrezGene: | EID2 |
HGNC: | 28292 |
UniProt: | F5GYE7Q8N6I1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.26e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.87e-12 | 81 |
brain | 3.38e-12 | 68 |
future brain | 3.38e-12 | 68 |
pre-chordal neural plate | 5.13e-11 | 61 |
neural plate | 1.23e-10 | 82 |
presumptive neural plate | 1.23e-10 | 82 |
nervous system | 4.77e-10 | 89 |
regional part of nervous system | 1.34e-09 | 53 |
regional part of brain | 1.34e-09 | 53 |
structure with developmental contribution from neural crest | 2.52e-09 | 132 |
neurectoderm | 3.23e-09 | 86 |
regional part of forebrain | 7.79e-09 | 41 |
forebrain | 7.79e-09 | 41 |
anterior neural tube | 7.79e-09 | 41 |
future forebrain | 7.79e-09 | 41 |
cerebral cortex | 8.63e-09 | 25 |
pallium | 8.63e-09 | 25 |
neural tube | 9.30e-09 | 56 |
neural rod | 9.30e-09 | 56 |
future spinal cord | 9.30e-09 | 56 |
neural keel | 9.30e-09 | 56 |
cerebral hemisphere | 3.16e-08 | 32 |
telencephalon | 6.00e-08 | 34 |
regional part of cerebral cortex | 6.91e-08 | 22 |
neocortex | 9.36e-08 | 20 |
regional part of telencephalon | 1.18e-07 | 32 |
cell layer | 1.52e-07 | 309 |
brain grey matter | 3.33e-07 | 34 |
gray matter | 3.33e-07 | 34 |
ecto-epithelium | 4.63e-07 | 104 |
epithelium | 6.58e-07 | 306 |