FFCP PHASE1:Hg19::chr2:65215604..65215625,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6509 | |EntrezGene=6509 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10942 | |HGNC=10942 | ||
|TSSclassifier=strong | |||
|UniProt=B7Z3C0 | |UniProt=B7Z3C0 | ||
|association_with_transcript=0bp_to_ENST00000471551,ENST00000493121,ENST00000531327_5end | |association_with_transcript=0bp_to_ENST00000471551,ENST00000493121,ENST00000531327_5end | ||
|cluster_id=chr2:65215604..65215625,+ | |||
|description=CAGE_peak_2_at_SLC1A4_5end | |description=CAGE_peak_2_at_SLC1A4_5end | ||
|id=chr2:65215604..65215625,+ | |id=chr2:65215604..65215625,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.71e-19!42;CL:0000860!1.33e-16!45;CL:0000557!1.90e-13!71;CL:0002009!6.17e-12!65;CL:0002031!1.26e-11!124;CL:0000738!1.39e-11!140;CL:0002194!2.58e-11!63;CL:0000576!2.58e-11!63;CL:0000040!2.58e-11!63;CL:0000559!2.58e-11!63;CL:0000839!4.91e-11!70;CL:0002087!5.35e-11!119;CL:0000766!4.55e-10!76;CL:0000988!1.68e-09!182;CL:0000037!4.25e-08!172;CL:0000566!4.25e-08!172 | |ontology_enrichment_celltype=CL:0002057!2.71e-19!42;CL:0000860!1.33e-16!45;CL:0000557!1.90e-13!71;CL:0002009!6.17e-12!65;CL:0002031!1.26e-11!124;CL:0000738!1.39e-11!140;CL:0002194!2.58e-11!63;CL:0000576!2.58e-11!63;CL:0000040!2.58e-11!63;CL:0000559!2.58e-11!63;CL:0000839!4.91e-11!70;CL:0002087!5.35e-11!119;CL:0000766!4.55e-10!76;CL:0000988!1.68e-09!182;CL:0000037!4.25e-08!172;CL:0000566!4.25e-08!172 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.06e-17;33!CL:0002057;2.06e-17;33!CL:0000473;1.30e-12;39!CL:0000234;1.30e-12;39!CL:0000576;3.04e-10;48!CL:0000766;5.05e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.22e-20,42;CL:0002057,9.22e-20,42;CL:0000473,7.55e-18,48;CL:0000234,7.55e-18,48;CL:0000557,1.43e-14,67;CL:0002009,5.40e-13,61;CL:0002194,2.45e-12,59;CL:0000576,2.45e-12,59;CL:0000040,2.45e-12,59;CL:0000559,2.45e-12,59;CL:0000839,3.99e-12,66;CL:0000738,8.14e-12,136;CL:0000766,1.44e-11,72;CL:0002031,2.60e-11,120;CL:0002087,1.15e-10,115;CL:0000988,1.82e-10,177;CL:0000037,1.05e-08,168;CL:0002032,4.02e-07,161;CL:0000837,4.02e-07,161;CL:0000763,7.20e-07,108;CL:0000049,7.20e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.21e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.36e-12!80;UBERON:0002405!1.04e-11!115;UBERON:0001474!1.85e-11!86;UBERON:0002390!6.66e-10!102;UBERON:0003061!6.66e-10!102;UBERON:0004765!3.02e-09!101;UBERON:0001434!3.02e-09!101;UBERON:0002193!9.79e-08!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.61e-14,76;UBERON:0001474,1.37e-12,82;UBERON:0004765,3.40e-11,90;UBERON:0002405,4.36e-11,93;UBERON:0002390,8.30e-11,98;UBERON:0003061,8.30e-11,98;UBERON:0001434,6.12e-10,100;UBERON:0002193,9.06e-09,108;UBERON:0001049,3.35e-07,56;UBERON:0005068,3.35e-07,56;UBERON:0006241,3.35e-07,56;UBERON:0007135,3.35e-07,56;UBERON:0000073,6.85e-07,53;UBERON:0002616,6.85e-07,53 | |||
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| ||
|short_description=p2@SLC1A4 | |short_description=p2@SLC1A4 | ||
}} | }} |
Latest revision as of 00:15, 18 September 2015
Short description: | p2@SLC1A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC1A4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000471551, ENST00000493121, ENST00000531327_5end |
EntrezGene: | SLC1A4 |
HGNC: | 10942 |
UniProt: | B7Z3C0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 9.22e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.22e-20 | 42 |
defensive cell | 7.55e-18 | 48 |
phagocyte | 7.55e-18 | 48 |
granulocyte monocyte progenitor cell | 1.43e-14 | 67 |
macrophage dendritic cell progenitor | 5.40e-13 | 61 |
monopoietic cell | 2.45e-12 | 59 |
monocyte | 2.45e-12 | 59 |
monoblast | 2.45e-12 | 59 |
promonocyte | 2.45e-12 | 59 |
myeloid lineage restricted progenitor cell | 3.99e-12 | 66 |
leukocyte | 8.14e-12 | 136 |
myeloid leukocyte | 1.44e-11 | 72 |
hematopoietic lineage restricted progenitor cell | 2.60e-11 | 120 |
nongranular leukocyte | 1.15e-10 | 115 |
hematopoietic cell | 1.82e-10 | 177 |
hematopoietic stem cell | 1.05e-08 | 168 |
hematopoietic oligopotent progenitor cell | 4.02e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.02e-07 | 161 |
myeloid cell | 7.20e-07 | 108 |
common myeloid progenitor | 7.20e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.61e-14 | 76 |
bone element | 1.37e-12 | 82 |
skeletal element | 3.40e-11 | 90 |
immune system | 4.36e-11 | 93 |
hematopoietic system | 8.30e-11 | 98 |
blood island | 8.30e-11 | 98 |
skeletal system | 6.12e-10 | 100 |
hemolymphoid system | 9.06e-09 | 108 |
neural tube | 3.35e-07 | 56 |
neural rod | 3.35e-07 | 56 |
future spinal cord | 3.35e-07 | 56 |
neural keel | 3.35e-07 | 56 |
regional part of nervous system | 6.85e-07 | 53 |
regional part of brain | 6.85e-07 | 53 |