FFCP PHASE1:Hg19::chr5:54830488..54830506,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:54830488..54830506,-
|short_description=p2@RNF138P1
|description=CAGE_peak_2_at_RNF138P1_5end
|association_with_transcript=-118bp_to_NR_001575,uc003jqc.1_5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=379013 | |EntrezGene=379013 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30342 | |HGNC=30342 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-118bp_to_NR_001575,uc003jqc.1_5end | |||
|cluster_id=chr5:54830488..54830506,- | |||
|coexpression_cluster_id=C1962 | |||
|description=CAGE_peak_2_at_RNF138P1_5end | |||
|id=chr5:54830488..54830506,- | |||
|ontology_enrichment_celltype=CL:0000136!8.42e-12!15;CL:0000055!1.98e-08!180;CL:0000057!5.65e-08!75 | |||
|ontology_enrichment_celltype_v019=CL:0000136;9.23e-15;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,3.64e-16,15;CL:0000057,2.23e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.22e-25!115;UBERON:0001049!4.56e-13!57;UBERON:0005068!4.56e-13!57;UBERON:0006241!4.56e-13!57;UBERON:0007135!4.56e-13!57;UBERON:0000475!1.99e-12!365;UBERON:0002616!2.20e-12!59;UBERON:0000955!2.55e-10!69;UBERON:0006238!2.55e-10!69;UBERON:0001017!3.30e-10!82;UBERON:0005743!7.08e-10!86;UBERON:0003080!8.47e-10!42;UBERON:0004111!2.37e-09!241;UBERON:0002780!2.82e-09!41;UBERON:0001890!2.82e-09!41;UBERON:0006240!2.82e-09!41;UBERON:0000477!3.08e-09!286;UBERON:0000025!5.63e-09!194;UBERON:0003075!7.42e-09!86;UBERON:0007284!7.42e-09!86;UBERON:0000481!3.02e-08!347;UBERON:0000468!3.05e-08!659;UBERON:0000073!3.07e-08!94;UBERON:0001016!3.07e-08!94;UBERON:0002346!6.77e-08!90;UBERON:0001013!2.24e-07!14;UBERON:0001893!3.53e-07!34;UBERON:0002020!3.59e-07!34;UBERON:0003528!3.59e-07!34;UBERON:0002791!5.09e-07!33;UBERON:0007100!5.96e-07!27;UBERON:0000483!6.77e-07!309;UBERON:0000119!7.98e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.17e-08;9!UBERON:0000042;1.17e-08;9!UBERON:0007023;2.93e-08;114!UBERON:0003688;6.93e-08;6!UBERON:0002358;6.93e-08;6!UBERON:0003684;6.93e-08;6!UBERON:0001178;6.93e-08;6!UBERON:0002780;6.10e-07;41!UBERON:0001890;6.10e-07;41!UBERON:0001013;9.62e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.54e-31,114;UBERON:0001049,1.83e-11,56;UBERON:0005068,1.83e-11,56;UBERON:0006241,1.83e-11,56;UBERON:0007135,1.83e-11,56;UBERON:0000073,6.46e-10,53;UBERON:0002616,6.46e-10,53;UBERON:0002780,1.77e-09,41;UBERON:0001890,1.77e-09,41;UBERON:0003080,1.77e-09,41;UBERON:0006240,1.77e-09,41;UBERON:0010314,3.27e-08,132;UBERON:0003075,3.70e-08,82;UBERON:0007284,3.70e-08,82;UBERON:0000479,5.24e-08,773;UBERON:0003688,7.39e-08,6;UBERON:0002358,7.39e-08,6;UBERON:0003684,7.39e-08,6;UBERON:0001178,7.39e-08,6;UBERON:0001017,1.01e-07,81;UBERON:0000955,1.08e-07,68;UBERON:0006238,1.08e-07,68;UBERON:0000025,2.15e-07,192;UBERON:0002346,2.83e-07,86;UBERON:0001893,3.09e-07,34;UBERON:0003528,3.32e-07,34;UBERON:0002020,3.32e-07,34;UBERON:0002791,3.63e-07,32;UBERON:0004457,4.13e-07,12;UBERON:0000042,4.13e-07,12;UBERON:0001013,5.15e-07,14;UBERON:0004111,7.18e-07,240;UBERON:0007100,8.43e-07,27 | |||
|phase1_expression=27.0700785113129,24.835660771354,32.9833305584573,41.0300523247835,75.5364249582116,59.3190196388251,7.59899634504932,1.89515962028049,22.9843352815858,0,0,0,0,2.97039247104112,5.30235801164665,0.672325146451775,0,0.730310090387373,0,0.246242116153576,0.612002073732759,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520237390239513,0,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,4.87613732627923,0,1.15076305659177,8.67453965722959,8.02140657017423,18.6852009459463,3.1811437882044,1.45990461090791,0.0945348171640679,0,0,2.29213382120997,0,0.370784442784429,0,0,0.26591592103773,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0.976248230192678,0.367663080345869,0,0,0,0,0,0,0,0,0,0,1.98788780678127,1.01304409331664,0.529636723252875,5.16305917347865,1.06400514659507,0,1.06748995729705,3.7000132262574,2.17847724779836,4.71487352243908,2.45192854670188,1.05950199351452,1.72852777344,0,0,0,0.448346041655403,0.352303495931295,0.809364721840658,0.702254033511242,2.85815839756851,0,8.47271405641277,0,0.247266929278557,0,0,0,0,1.10825646193673,0,0.612975591598039,0.45071417671979,2.1552114800404,1.25572744982203,2.13557388818567,1.90738711043606,5.40163972951924,5.35873152039882,1.03056216018252,7.258557396932,8.10126394758078,7.50264939741229,2.27190396819703,2.57739716198438,5.01102776138317,4.9701342952326,3.02256294682921,1.18692414617341,0.193260853163297,0,0,0.731842236777572,0.662648841607426,0.464775771478074,0.829288440122964,0.756962552626885,0,0,0.643240938192885,0,2.3218396401599,0,0,0,0,0,0.217879444092406,0.237270619111097,0,0,0,0.738155454624648,0,0.8231480226628,1.47008711385542,10.1404027857465,9.82827216677626,15.9513274803979,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0.234817388471643,0.721832238805369,0.462985512576611,0.951270761172991,0,0,0,0,0,0,0.503946384596579,0.141775097242386,0.0895585227028483,0,0.383382679165211,13.7945706610864,2.90559832243646,0,0,0.12624243342638,0,0,1.17217447210047,5.13217338068116,0,0,0,0,0.43596006883328,0.07333828582095,0.646358578788889,3.57656445851882,0.845302752556,2.6593811658487,1.04007436911366,0,0,0,7.14889968290738,6.51145926469732,0.823240336780769,0.65147236858747,5.33087923113819,0,0.904318131178758,7.84380112740265,0,0,0,0,0.239624855491583,2.29723871668228,0,1.01346914667305,1.43833425785268,0.358121926479791,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,6.37995756939527,1.00034104211935,0.271265023699736,0.623912584592421,0.356857977594324,0,0.35142424497814,0.601892199455438,2.27407504055985,1.03473071292505,0,0.368738337083406,0.347534457872331,0.783204629850962,0.343143423810856,0,0,0,0,0,0,7.93944985020086,3.22270143904931,4.49056151092918,13.3264715225929,10.2341449813341,6.11244900345709,11.8734453155993,0.308419387605311,0,0.492762936082855,0,0.232420756919918,0.120859449591622,0.200506470303285,0,0.918515585316854,0.182091168006717,2.22911505431021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,6.07941968721561,0,0.082509499920588,0,0,0,0.096670718292122,0,0.460511024178389,0,0.107420244868274,0.435050081742686,0.255679882248303,0.801288320820636,0,0,0,0,0,1.5740617341532,0,0.616067160352178,0,0,1.66791797193528,8.87374297800346,0.744316738719335,0.316379424718726,0.190630193923825,0.511795582622668,0.42793898803392,0.318203247925937,1.56989728039846,0.539617372749944,1.09814811894422,0.353437207037059,0.606547444719948,1.58510321173008,0,0,1.94970791705028,0,0.9554993798559,1.83827061539827,2.26016233240486,0.551365343546124,2.65375590096488,3.5076070820301,0.578775534266688,0.655894752046633,0.405820753925408,2.16876448669825,0,0.286822704408103,0.294747123039363,0.7133421029625,0.354761064070598,45.3881415889978,28.3193607945516,0.379473173765715,0,0,0,0,5.08376524194607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,0,9.96255619048879,0,0,0,0,0,0,3.97659059106519,1.54736358051564,0,0,0,6.77443160053637,1.38141957765574,0,0,0,0.933118762985422,0.0898683511473268,0,0,4.43895325366201,0,0,0,1.48428957058962,0,0,0,7.24999575434793,0,0,0,0,0,0.173624994933292,4.42870692906919,1.08536794762867,0,1.43753037910592,0.591095237907095,1.31631238292384,0,0,4.69396576873162,1.13942055847001,0,0.0897576444097721,0,1.27600463892768,0.641183153813036,1.06606955203727,0,0.31396051279005,0.166211681900156,0,0,0,0,0,0.210998064528027,0,0.565412285735763,0,0,2.29989667708682,5.49927130440263,0,0,0,2.29163852134302,10.4335094148843,2.10838001152805,0.364909578431332,0.19566461893209,0,2.36750641709634,8.46935012340647,0,4.35987399436567,0.300646838828985,0,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0,3.4945333648406,2.0638323896594,0,0,0,2.61870344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| ||
|short_description=p2@RNF138P1 | |||
}} | }} |
Latest revision as of 04:14, 18 September 2015
Short description: | p2@RNF138P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNF138P1_5end |
Coexpression cluster: | C1962_Adipocyte_Synoviocyte_Mast_mature_tenocyte_Chondrocyte_leiomyoblastoma |
Association with transcript: | -118bp_to_NR_001575, uc003jqc.1_5end |
EntrezGene: | RNF138P1 |
HGNC: | 30342 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 3.64e-16 | 15 |
fibroblast | 2.23e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.54e-31 | 114 |
neural tube | 1.83e-11 | 56 |
neural rod | 1.83e-11 | 56 |
future spinal cord | 1.83e-11 | 56 |
neural keel | 1.83e-11 | 56 |
regional part of nervous system | 6.46e-10 | 53 |
regional part of brain | 6.46e-10 | 53 |
regional part of forebrain | 1.77e-09 | 41 |
forebrain | 1.77e-09 | 41 |
anterior neural tube | 1.77e-09 | 41 |
future forebrain | 1.77e-09 | 41 |
structure with developmental contribution from neural crest | 3.27e-08 | 132 |
neural plate | 3.70e-08 | 82 |
presumptive neural plate | 3.70e-08 | 82 |
tissue | 5.24e-08 | 773 |
omentum | 7.39e-08 | 6 |
peritoneum | 7.39e-08 | 6 |
abdominal cavity | 7.39e-08 | 6 |
visceral peritoneum | 7.39e-08 | 6 |
central nervous system | 1.01e-07 | 81 |
brain | 1.08e-07 | 68 |
future brain | 1.08e-07 | 68 |
tube | 2.15e-07 | 192 |
neurectoderm | 2.83e-07 | 86 |
telencephalon | 3.09e-07 | 34 |
brain grey matter | 3.32e-07 | 34 |
gray matter | 3.32e-07 | 34 |
regional part of telencephalon | 3.63e-07 | 32 |
cavity lining | 4.13e-07 | 12 |
serous membrane | 4.13e-07 | 12 |
adipose tissue | 5.15e-07 | 14 |
anatomical conduit | 7.18e-07 | 240 |
primary circulatory organ | 8.43e-07 | 27 |