FFCP PHASE1:Hg19::chr2:176987415..176987425,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3235 | |EntrezGene=3235 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5140 | |HGNC=5140 | ||
|TSSclassifier=strong | |||
|UniProt=P28356 | |UniProt=P28356 | ||
|association_with_transcript=2bp_to_NM_014213,uc010zex.1_5end | |association_with_transcript=2bp_to_NM_014213,uc010zex.1_5end | ||
|cluster_id=chr2:176987415..176987425,+ | |||
|description=CAGE_peak_4_at_HOXD9_5end | |description=CAGE_peak_4_at_HOXD9_5end | ||
|id=chr2:176987415..176987425,+ | |id=chr2:176987415..176987425,+ | ||
|ontology_enrichment_celltype=CL:1000497!1.26e-08!18;CL:0002518!1.26e-08!18;CL:0002620!8.47e-08!23 | |ontology_enrichment_celltype=CL:1000497!1.26e-08!18;CL:0002518!1.26e-08!18;CL:0002620!8.47e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0000313;1.65e-16;1!CL:1000497;6.97e-15;17!CL:0002518;6.97e-15;17!CL:0002188;1.79e-13;5!CL:1000449;6.69e-10;15!CL:1000746;6.84e-10;7!CL:1000612;6.84e-10;7!CL:0000159;6.42e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,1.04e-16,1;CL:1000497,6.50e-15,17;CL:0002518,6.50e-15,17;CL:0002188,1.85e-13,5;CL:1000449,6.39e-10,15;CL:1000746,7.00e-10,7;CL:1000612,7.00e-10,7;CL:0000159,5.08e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0003918;4.45e-07;10!UBERON:0007687;4.45e-07;10 | |||
|ontology_enrichment_disease=DOID:0050687!1.44e-10!143;DOID:171!7.07e-08!10 | |ontology_enrichment_disease=DOID:0050687!1.44e-10!143;DOID:171!7.07e-08!10 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.65e-16;1!DOID:4549;1.65e-16;1!DOID:5861;1.65e-16;1!DOID:2152;1.65e-16;1!DOID:6496;1.65e-16;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,1.04e-16,1;DOID:3371,2.25e-16,1;DOID:4549,2.25e-16,1;DOID:5861,2.25e-16,1;DOID:6496,2.25e-16,1 | |||
|ontology_enrichment_uberon=UBERON:0002113!2.37e-11!27;UBERON:0003918!2.37e-11!27;UBERON:0005095!2.37e-11!27;UBERON:0007687!2.37e-11!27;UBERON:0000489!6.96e-10!32;UBERON:0003887!1.76e-09!21;UBERON:0000080!1.61e-08!18;UBERON:0002120!1.61e-08!18;UBERON:0004875!1.61e-08!18;UBERON:0005721!1.61e-08!18;UBERON:0005754!1.61e-08!18;UBERON:0007297!1.61e-08!18;UBERON:0001008!2.67e-08!45;UBERON:0001737!1.44e-07!9;UBERON:0006554!1.53e-07!44;UBERON:0006555!2.01e-07!17;UBERON:0005103!2.01e-07!17;UBERON:0000083!2.01e-07!17;UBERON:0009201!2.01e-07!17;UBERON:0004819!2.01e-07!17;UBERON:0006553!2.01e-07!17;UBERON:0003074!2.01e-07!17;UBERON:0003060!2.01e-07!17;UBERON:0004876!2.24e-07!20;UBERON:0000013!7.44e-07!5;UBERON:0002410!7.44e-07!5;UBERON:0000010!9.72e-07!8 | |ontology_enrichment_uberon=UBERON:0002113!2.37e-11!27;UBERON:0003918!2.37e-11!27;UBERON:0005095!2.37e-11!27;UBERON:0007687!2.37e-11!27;UBERON:0000489!6.96e-10!32;UBERON:0003887!1.76e-09!21;UBERON:0000080!1.61e-08!18;UBERON:0002120!1.61e-08!18;UBERON:0004875!1.61e-08!18;UBERON:0005721!1.61e-08!18;UBERON:0005754!1.61e-08!18;UBERON:0007297!1.61e-08!18;UBERON:0001008!2.67e-08!45;UBERON:0001737!1.44e-07!9;UBERON:0006554!1.53e-07!44;UBERON:0006555!2.01e-07!17;UBERON:0005103!2.01e-07!17;UBERON:0000083!2.01e-07!17;UBERON:0009201!2.01e-07!17;UBERON:0004819!2.01e-07!17;UBERON:0006553!2.01e-07!17;UBERON:0003074!2.01e-07!17;UBERON:0003060!2.01e-07!17;UBERON:0004876!2.24e-07!20;UBERON:0000013!7.44e-07!5;UBERON:0002410!7.44e-07!5;UBERON:0000010!9.72e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0004911;1.65e-16;1!UBERON:0002113;4.39e-16;24!UBERON:0011143;4.39e-16;24!UBERON:0000489;2.54e-13;29!UBERON:0006554;7.05e-13;30!UBERON:0001008;7.05e-13;30!UBERON:0006555;6.69e-10;15!UBERON:0004819;6.69e-10;15!UBERON:0001285;6.69e-10;15!UBERON:0007684;6.69e-10;15!UBERON:0000074;6.84e-10;7!UBERON:0001229;6.84e-10;7!UBERON:0004909;6.42e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,1.04e-16,1;UBERON:0002113,7.71e-15,26;UBERON:0003918,7.71e-15,26;UBERON:0011143,7.71e-15,26;UBERON:0005095,7.71e-15,26;UBERON:0007687,7.71e-15,26;UBERON:0000489,1.88e-12,31;UBERON:0004211,6.39e-10,15;UBERON:0009773,6.39e-10,15;UBERON:0001231,6.39e-10,15;UBERON:0001285,6.39e-10,15;UBERON:0007684,6.39e-10,15;UBERON:0004208,6.39e-10,15;UBERON:0010532,7.00e-10,7;UBERON:0000074,7.00e-10,7;UBERON:0001229,7.00e-10,7;UBERON:0001230,7.00e-10,7;UBERON:0003220,7.00e-10,7;UBERON:0005749,7.00e-10,7;UBERON:0004199,7.00e-10,7;UBERON:0004209,7.00e-10,7;UBERON:0004198,7.00e-10,7;UBERON:0006555,2.46e-09,16;UBERON:0004819,2.46e-09,16;UBERON:0004909,5.08e-09,2;UBERON:0005103,9.31e-09,8;UBERON:0000083,9.31e-09,8;UBERON:0009201,9.31e-09,8;UBERON:0006553,9.31e-09,8;UBERON:0003074,9.31e-09,8;UBERON:0003060,9.31e-09,8;UBERON:0006554,3.28e-08,47;UBERON:0001008,4.88e-08,48;UBERON:0000080,7.01e-08,9;UBERON:0002120,7.01e-08,9;UBERON:0004875,7.01e-08,9;UBERON:0005721,7.01e-08,9;UBERON:0005754,7.01e-08,9;UBERON:0007297,7.01e-08,9;UBERON:0005172,3.87e-07,54;UBERON:0005173,3.87e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0.486634870302636,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.976248230192678,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0.179389635688862,0.427114777637135,0.211931901159562,0,0.309157587715317,0.257640540045629,1.30281799432113,0.337552664482532,0.194874010322397,0.252433774244115,0.184099797284599,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.473227200159376,0.505754070234305,0,0.441175890929576,0.435758888184812,0.474541238222193,0.404493924480493,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577465791044295,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0,0,0.129271715757778,3.57656445851882,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0.841980283299221,0,0,0,0,0,0.355123450626254,0.246381468041427,0,0,0,0,0,0,0,0,0.451199612907412,0,0,1.46139224653261,0,2.27466768141793,0.850468526382578,0,4.62681758070868,0,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,0.103041011647722,0.640986253728404,0,0,0,0,0.580024309752732,0,0,0,0,0,0,0.356128142586949,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,1.89110145414349,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.538651809526579,0,0,0.179515288819544,1.4124158349861,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0,0.174118413160805,0.52418000472609,0.687944129886466,0.290268993867255,0.65780385377567,0.574808199372465,0.0969890164884194,1.235585773681,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.788057072991982,1.20645552710496,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0.5013797880454,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0.454947352624943,0,0,0.936669811613763,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0,0,0,0.464033759878494,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0.607719912354764,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.368211900503681,0,0,0.511577485214607,0.215649622793364,0.314531883711793,0.218419276384028,0,0.425149840203366,0.247871528518004,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0,0.703484977438482,0,0,0,0,0,0,0.230467975111559,0,0,0,0.236387681767936,0,0.235479278551542,0,0,0,0.647782773655864,2.38875843943525,0,0.158013611732727,0.348724276104376,0,0,0,0,0,0,0.828324005113957,0.170426809518315,0.846774100381858,0.22910686854405,0.62041277132864,0.955538938977433,1.67783147696688,0,0,0,0.307988420568741,0,0,0,0,0.237840181555137,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.375935671919414,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0.924351257262837,0,0,0,0,0,0,0.18378979906969,0,0.757786982182394,0.267964130156178,0,0,0.426467963801962,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0.286888821570705,0,0,0,0,0,0,0.366724332548599,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0.486634870302636,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.976248230192678,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0.179389635688862,0.427114777637135,0.211931901159562,0,0.309157587715317,0.257640540045629,1.30281799432113,0.337552664482532,0.194874010322397,0.252433774244115,0.184099797284599,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.473227200159376,0.505754070234305,0,0.441175890929576,0.435758888184812,0.474541238222193,0.404493924480493,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577465791044295,0,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0,0,0.129271715757778,3.57656445851882,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0.841980283299221,0,0,0,0,0,0.355123450626254,0.246381468041427,0,0,0,0,0,0,0,0,0.451199612907412,0,0,1.46139224653261,0,2.27466768141793,0.850468526382578,0,4.62681758070868,0,0.501689773854853,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,0.103041011647722,0.640986253728404,0,0,0,0,0.580024309752732,0,0,0,0,0,0,0.356128142586949,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,1.89110145414349,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0.538651809526579,0,0,0.179515288819544,1.4124158349861,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0.284609546029793,0,0.347119476670262,0,0.174118413160805,0.52418000472609,0.687944129886466,0.290268993867255,0.65780385377567,0.574808199372465,0.0969890164884194,1.235585773681,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.788057072991982,1.20645552710496,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0.5013797880454,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0.454947352624943,0,0,0.936669811613763,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0,0,0,0,0,0.464033759878494,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0.617602894321944,0,0,0,0,0,0,0.607719912354764,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.368211900503681,0,0,0.511577485214607,0.215649622793364,0.314531883711793,0.218419276384028,0,0.425149840203366,0.247871528518004,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0.300841313397029,0,0,0,0,0,0,0,0,0,0,0,0,0.703484977438482,0,0,0,0,0,0,0.230467975111559,0,0,0,0.236387681767936,0,0.235479278551542,0,0,0,0.647782773655864,2.38875843943525,0,0.158013611732727,0.348724276104376,0,0,0,0,0,0,0.828324005113957,0.170426809518315,0.846774100381858,0.22910686854405,0.62041277132864,0.955538938977433,1.67783147696688,0,0,0,0.307988420568741,0,0,0,0,0.237840181555137,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.375935671919414,0.0644578879735772,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0.924351257262837,0,0,0,0,0,0,0.18378979906969,0,0.757786982182394,0.267964130156178,0,0,0.426467963801962,0,0,0.0620747142958579,0,0,0,0,0.342233301085281,0,0.286888821570705,0,0,0,0,0,0,0.366724332548599,0,0.665756774185513,0,0 | ||
|short_description=p4@HOXD9 | |short_description=p4@HOXD9 | ||
}} | }} |
Latest revision as of 09:01, 18 September 2015
Short description: | p4@HOXD9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXD9_5end |
Coexpression cluster: | NA |
Association with transcript: | 2bp_to_NM_014213, uc010zex.1_5end |
EntrezGene: | HOXD9 |
HGNC: | 5140 |
UniProt: | P28356 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 1.04e-16 | 1 |
kidney cell | 6.50e-15 | 17 |
kidney epithelial cell | 6.50e-15 | 17 |
glomerular endothelial cell | 1.85e-13 | 5 |
epithelial cell of nephron | 6.39e-10 | 15 |
glomerular cell | 7.00e-10 | 7 |
kidney corpuscule cell | 7.00e-10 | 7 |
seromucus secreting cell | 5.08e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 1.04e-16 | 1 |
chondrosarcoma | 2.25e-16 | 1 |
extraosseous chondrosarcoma | 2.25e-16 | 1 |
myxoid chondrosarcoma | 2.25e-16 | 1 |
extraskeletal myxoid chondrosarcoma | 2.25e-16 | 1 |