FFCP PHASE1:Hg19::chr10:50747140..50747151,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2074,267004 | |EntrezGene=2074,267004 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3438,19400 | |HGNC=3438,19400 | ||
|TSSclassifier=strong | |||
|UniProt=Q03468 | |UniProt=Q03468 | ||
|association_with_transcript=0bp_to_NM_000124,uc001jhs.3,uc009xoe.2_5end | |association_with_transcript=0bp_to_NM_000124,uc001jhs.3,uc009xoe.2_5end | ||
|cluster_id=chr10:50747140..50747151,- | |||
|description=CAGE_peak_3_at_ERCC6_5end,CAGE_peak_3_at_PGBD3_5end | |description=CAGE_peak_3_at_ERCC6_5end,CAGE_peak_3_at_PGBD3_5end | ||
|id=chr10:50747140..50747151,- | |id=chr10:50747140..50747151,- | ||
|ontology_enrichment_celltype=CL:0000860!5.67e-07!45;CL:0002057!9.46e-07!42 | |ontology_enrichment_celltype=CL:0000860!5.67e-07!45;CL:0002057!9.46e-07!42 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.16e-11!57;UBERON:0005068!7.16e-11!57;UBERON:0006241!7.16e-11!57;UBERON:0007135!7.16e-11!57;UBERON:0001017!2.83e-09!82;UBERON:0002616!4.52e-09!59;UBERON:0002780!4.99e-09!41;UBERON:0001890!4.99e-09!41;UBERON:0006240!4.99e-09!41;UBERON:0000955!1.41e-08!69;UBERON:0006238!1.41e-08!69;UBERON:0005743!1.86e-08!86;UBERON:0000073!2.17e-08!94;UBERON:0001016!2.17e-08!94;UBERON:0003080!2.30e-08!42;UBERON:0001869!4.72e-08!32;UBERON:0001893!4.83e-08!34;UBERON:0002020!5.19e-08!34;UBERON:0003528!5.19e-08!34;UBERON:0003075!5.45e-08!86;UBERON:0007284!5.45e-08!86;UBERON:0002791!1.17e-07!33;UBERON:0002346!1.73e-07!90;UBERON:0007023!3.45e-07!115 | |ontology_enrichment_uberon=UBERON:0001049!7.16e-11!57;UBERON:0005068!7.16e-11!57;UBERON:0006241!7.16e-11!57;UBERON:0007135!7.16e-11!57;UBERON:0001017!2.83e-09!82;UBERON:0002616!4.52e-09!59;UBERON:0002780!4.99e-09!41;UBERON:0001890!4.99e-09!41;UBERON:0006240!4.99e-09!41;UBERON:0000955!1.41e-08!69;UBERON:0006238!1.41e-08!69;UBERON:0005743!1.86e-08!86;UBERON:0000073!2.17e-08!94;UBERON:0001016!2.17e-08!94;UBERON:0003080!2.30e-08!42;UBERON:0001869!4.72e-08!32;UBERON:0001893!4.83e-08!34;UBERON:0002020!5.19e-08!34;UBERON:0003528!5.19e-08!34;UBERON:0003075!5.45e-08!86;UBERON:0007284!5.45e-08!86;UBERON:0002791!1.17e-07!33;UBERON:0002346!1.73e-07!90;UBERON:0007023!3.45e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.13e-08;32!UBERON:0003528;2.99e-08;34!UBERON:0002020;2.99e-08;34!UBERON:0002791;5.53e-08;32!UBERON:0001893;8.50e-08;34!UBERON:0002619;8.51e-08;22!UBERON:0000073;2.13e-07;53!UBERON:0002616;2.13e-07;53!UBERON:0002780;7.83e-07;41!UBERON:0001890;7.83e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.47e-12,56;UBERON:0005068,1.47e-12,56;UBERON:0006241,1.47e-12,56;UBERON:0007135,1.47e-12,56;UBERON:0000073,1.42e-11,53;UBERON:0002616,1.42e-11,53;UBERON:0001017,2.80e-10,81;UBERON:0001869,1.02e-09,32;UBERON:0003075,1.17e-09,82;UBERON:0007284,1.17e-09,82;UBERON:0000955,1.64e-09,68;UBERON:0006238,1.64e-09,68;UBERON:0002780,3.07e-09,41;UBERON:0001890,3.07e-09,41;UBERON:0003080,3.07e-09,41;UBERON:0006240,3.07e-09,41;UBERON:0001016,3.65e-09,89;UBERON:0003528,5.13e-09,34;UBERON:0002020,5.13e-09,34;UBERON:0001893,7.36e-09,34;UBERON:0002346,8.75e-09,86;UBERON:0010371,9.66e-09,104;UBERON:0002791,1.37e-08,32;UBERON:0010314,1.83e-08,132;UBERON:0002619,2.36e-07,22;UBERON:0004121,6.17e-07,171;UBERON:0000924,6.17e-07,171;UBERON:0006601,6.17e-07,171;UBERON:0007023,7.76e-07,114 | |||
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| ||
|short_description=p3@ERCC6,p3@PGBD3 | |short_description=p3@ERCC6,p3@PGBD3 | ||
}} | }} |
Latest revision as of 10:00, 18 September 2015
Short description: | p3@ERCC6, p3@PGBD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ERCC6_5end, CAGE_peak_3_at_PGBD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_000124, uc001jhs.3, uc009xoe.2_5end |
EntrezGene: | 2074,267004 |
HGNC: | 19400&submit=Submit 3438, 19400 |
UniProt: | Q03468 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 1.47e-12 | 56 |
neural rod | 1.47e-12 | 56 |
future spinal cord | 1.47e-12 | 56 |
neural keel | 1.47e-12 | 56 |
regional part of nervous system | 1.42e-11 | 53 |
regional part of brain | 1.42e-11 | 53 |
central nervous system | 2.80e-10 | 81 |
cerebral hemisphere | 1.02e-09 | 32 |
neural plate | 1.17e-09 | 82 |
presumptive neural plate | 1.17e-09 | 82 |
brain | 1.64e-09 | 68 |
future brain | 1.64e-09 | 68 |
regional part of forebrain | 3.07e-09 | 41 |
forebrain | 3.07e-09 | 41 |
anterior neural tube | 3.07e-09 | 41 |
future forebrain | 3.07e-09 | 41 |
nervous system | 3.65e-09 | 89 |
brain grey matter | 5.13e-09 | 34 |
gray matter | 5.13e-09 | 34 |
telencephalon | 7.36e-09 | 34 |
neurectoderm | 8.75e-09 | 86 |
ecto-epithelium | 9.66e-09 | 104 |
regional part of telencephalon | 1.37e-08 | 32 |
structure with developmental contribution from neural crest | 1.83e-08 | 132 |
regional part of cerebral cortex | 2.36e-07 | 22 |
ectoderm-derived structure | 6.17e-07 | 171 |
ectoderm | 6.17e-07 | 171 |
presumptive ectoderm | 6.17e-07 | 171 |
adult organism | 7.76e-07 | 114 |