FFCP PHASE1:Hg19::chr17:11924129..11924200,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6416 | |EntrezGene=6416 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6844 | |HGNC=6844 | ||
|TSSclassifier=strong | |||
|UniProt=P45985,B4DH44 | |UniProt=P45985,B4DH44 | ||
|association_with_transcript=0bp_to_ENST00000353533,ENST00000415385,ENST00000538465,NM_003010,uc002gnj.2,uc002gnk.2_5end | |association_with_transcript=0bp_to_ENST00000353533,ENST00000415385,ENST00000538465,NM_003010,uc002gnj.2,uc002gnk.2_5end | ||
|cluster_id=chr17:11924129..11924200,+ | |||
|coexpression_cluster_id=C468 | |||
|description=CAGE_peak_1_at_MAP2K4_5end | |description=CAGE_peak_1_at_MAP2K4_5end | ||
|id=chr17:11924129..11924200,+ | |id=chr17:11924129..11924200,+ | ||
|ontology_enrichment_celltype=CL:0000738!2.99e-13!140;CL:0000766!2.21e-10!76;CL:0002031!7.98e-10!124;CL:0002057!3.19e-09!42;CL:0000557!5.45e-09!71;CL:0002087!1.54e-08!119;CL:0000839!1.04e-07!70;CL:0000860!1.60e-07!45;CL:0002009!1.71e-07!65;CL:0000037!8.18e-07!172;CL:0000566!8.18e-07!172;CL:0002194!9.15e-07!63;CL:0000576!9.15e-07!63;CL:0000040!9.15e-07!63;CL:0000559!9.15e-07!63 | |ontology_enrichment_celltype=CL:0000738!2.99e-13!140;CL:0000766!2.21e-10!76;CL:0002031!7.98e-10!124;CL:0002057!3.19e-09!42;CL:0000557!5.45e-09!71;CL:0002087!1.54e-08!119;CL:0000839!1.04e-07!70;CL:0000860!1.60e-07!45;CL:0002009!1.71e-07!65;CL:0000037!8.18e-07!172;CL:0000566!8.18e-07!172;CL:0002194!9.15e-07!63;CL:0000576!9.15e-07!63;CL:0000040!9.15e-07!63;CL:0000559!9.15e-07!63 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.56e-08;33!CL:0002057;2.56e-08;33!CL:0000473;3.69e-07;39!CL:0000234;3.69e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.53e-14,136;CL:0000766,1.41e-11,72;CL:0002031,1.24e-10,120;CL:0000557,4.11e-10,67;CL:0002087,2.74e-09,115;CL:0000860,3.19e-09,42;CL:0002057,3.19e-09,42;CL:0000473,5.02e-09,48;CL:0000234,5.02e-09,48;CL:0000839,1.04e-08,66;CL:0002009,1.58e-08,61;CL:0002194,9.69e-08,59;CL:0000576,9.69e-08,59;CL:0000040,9.69e-08,59;CL:0000559,9.69e-08,59;CL:0000037,2.56e-07,168;CL:0002032,5.52e-07,161;CL:0000837,5.52e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;3.44e-07;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.82e-30!115;UBERON:0001049!3.92e-22!57;UBERON:0005068!3.92e-22!57;UBERON:0006241!3.92e-22!57;UBERON:0007135!3.92e-22!57;UBERON:0003080!2.38e-20!42;UBERON:0002780!4.36e-20!41;UBERON:0001890!4.36e-20!41;UBERON:0006240!4.36e-20!41;UBERON:0001017!1.94e-19!82;UBERON:0005743!6.86e-18!86;UBERON:0002616!9.80e-18!59;UBERON:0000955!1.14e-17!69;UBERON:0006238!1.14e-17!69;UBERON:0001869!2.18e-17!32;UBERON:0002020!2.67e-17!34;UBERON:0003528!2.67e-17!34;UBERON:0001893!9.16e-17!34;UBERON:0002791!3.86e-16!33;UBERON:0000073!5.36e-16!94;UBERON:0001016!5.36e-16!94;UBERON:0002619!2.38e-15!22;UBERON:0001950!4.14e-14!20;UBERON:0000956!6.12e-14!25;UBERON:0000203!6.12e-14!25;UBERON:0002346!8.07e-13!90;UBERON:0003075!1.11e-12!86;UBERON:0007284!1.11e-12!86;UBERON:0003056!9.06e-10!61;UBERON:0002390!1.33e-09!102;UBERON:0003061!1.33e-09!102;UBERON:0000153!2.31e-09!129;UBERON:0007811!2.31e-09!129;UBERON:0000033!2.21e-08!123;UBERON:0002193!3.13e-07!112;UBERON:0000924!3.85e-07!173;UBERON:0006601!3.85e-07!173;UBERON:0004121!6.32e-07!169 | |ontology_enrichment_uberon=UBERON:0007023!2.82e-30!115;UBERON:0001049!3.92e-22!57;UBERON:0005068!3.92e-22!57;UBERON:0006241!3.92e-22!57;UBERON:0007135!3.92e-22!57;UBERON:0003080!2.38e-20!42;UBERON:0002780!4.36e-20!41;UBERON:0001890!4.36e-20!41;UBERON:0006240!4.36e-20!41;UBERON:0001017!1.94e-19!82;UBERON:0005743!6.86e-18!86;UBERON:0002616!9.80e-18!59;UBERON:0000955!1.14e-17!69;UBERON:0006238!1.14e-17!69;UBERON:0001869!2.18e-17!32;UBERON:0002020!2.67e-17!34;UBERON:0003528!2.67e-17!34;UBERON:0001893!9.16e-17!34;UBERON:0002791!3.86e-16!33;UBERON:0000073!5.36e-16!94;UBERON:0001016!5.36e-16!94;UBERON:0002619!2.38e-15!22;UBERON:0001950!4.14e-14!20;UBERON:0000956!6.12e-14!25;UBERON:0000203!6.12e-14!25;UBERON:0002346!8.07e-13!90;UBERON:0003075!1.11e-12!86;UBERON:0007284!1.11e-12!86;UBERON:0003056!9.06e-10!61;UBERON:0002390!1.33e-09!102;UBERON:0003061!1.33e-09!102;UBERON:0000153!2.31e-09!129;UBERON:0007811!2.31e-09!129;UBERON:0000033!2.21e-08!123;UBERON:0002193!3.13e-07!112;UBERON:0000924!3.85e-07!173;UBERON:0006601!3.85e-07!173;UBERON:0004121!6.32e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;9.21e-16;32!UBERON:0002619;2.34e-15;22!UBERON:0003528;3.72e-15;34!UBERON:0002020;3.72e-15;34!UBERON:0002791;7.42e-15;32!UBERON:0001893;1.56e-14;34!UBERON:0002780;1.62e-14;41!UBERON:0001890;1.62e-14;41!UBERON:0001950;4.09e-14;20!UBERON:0000956;6.10e-14;25!UBERON:0000203;6.10e-14;25!UBERON:0000073;9.15e-12;53!UBERON:0002616;9.15e-12;53!UBERON:0000955;4.29e-09;68!UBERON:0001017;1.14e-08;75!UBERON:0007023;1.15e-08;114!UBERON:0001016;8.87e-08;83 | |||
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533534716 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|short_description=p1@MAP2K4 | |short_description=p1@MAP2K4 | ||
}} | }} |
Latest revision as of 16:07, 18 September 2015
Short description: | p1@MAP2K4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MAP2K4_5end |
Coexpression cluster: | C468_Neutrophils_Eosinophils_cerebellum_occipital_Whole_temporal_parietal |
Association with transcript: | 0bp_to_ENST00000353533, ENST00000415385, ENST00000538465, NM_003010, uc002gnj.2, uc002gnk.2_5end |
EntrezGene: | MAP2K4 |
HGNC: | 6844 |
UniProt: | P45985B4DH44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.53e-14 | 136 |
myeloid leukocyte | 1.41e-11 | 72 |
hematopoietic lineage restricted progenitor cell | 1.24e-10 | 120 |
granulocyte monocyte progenitor cell | 4.11e-10 | 67 |
nongranular leukocyte | 2.74e-09 | 115 |
classical monocyte | 3.19e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.19e-09 | 42 |
defensive cell | 5.02e-09 | 48 |
phagocyte | 5.02e-09 | 48 |
myeloid lineage restricted progenitor cell | 1.04e-08 | 66 |
macrophage dendritic cell progenitor | 1.58e-08 | 61 |
monopoietic cell | 9.69e-08 | 59 |
monocyte | 9.69e-08 | 59 |
monoblast | 9.69e-08 | 59 |
promonocyte | 9.69e-08 | 59 |
hematopoietic stem cell | 2.56e-07 | 168 |
hematopoietic oligopotent progenitor cell | 5.52e-07 | 161 |
hematopoietic multipotent progenitor cell | 5.52e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.14e-29 | 114 |
neural tube | 7.57e-22 | 56 |
neural rod | 7.57e-22 | 56 |
future spinal cord | 7.57e-22 | 56 |
neural keel | 7.57e-22 | 56 |
regional part of nervous system | 1.36e-20 | 53 |
regional part of brain | 1.36e-20 | 53 |
regional part of forebrain | 4.36e-20 | 41 |
forebrain | 4.36e-20 | 41 |
anterior neural tube | 4.36e-20 | 41 |
future forebrain | 4.36e-20 | 41 |
central nervous system | 3.81e-19 | 81 |
cerebral hemisphere | 2.18e-17 | 32 |
brain | 2.21e-17 | 68 |
future brain | 2.21e-17 | 68 |
brain grey matter | 2.67e-17 | 34 |
gray matter | 2.67e-17 | 34 |
nervous system | 5.00e-17 | 89 |
telencephalon | 9.16e-17 | 34 |
regional part of telencephalon | 2.73e-16 | 32 |
regional part of cerebral cortex | 2.38e-15 | 22 |
neocortex | 4.14e-14 | 20 |
cerebral cortex | 6.12e-14 | 25 |
pallium | 6.12e-14 | 25 |
neurectoderm | 2.54e-12 | 86 |
neural plate | 3.46e-12 | 82 |
presumptive neural plate | 3.46e-12 | 82 |
hematopoietic system | 1.64e-10 | 98 |
blood island | 1.64e-10 | 98 |
pre-chordal neural plate | 6.45e-10 | 61 |
organ system subdivision | 3.28e-08 | 223 |
hemolymphoid system | 6.40e-08 | 108 |
ecto-epithelium | 1.77e-07 | 104 |