FFCP PHASE1:Hg19::chr4:77134706..77134717,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:77134706..77134717,-
|short_description=p5@SCARB2
|description=CAGE_peak_5_at_SCARB2_5end
|association_with_transcript=35bp_to_ENST00000509994_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=950 | |EntrezGene=950 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1665 | |HGNC=1665 | ||
|TSSclassifier=strong | |||
|UniProt=D6RDG0 | |UniProt=D6RDG0 | ||
|association_with_transcript=35bp_to_ENST00000509994_5end | |||
|cluster_id=chr4:77134706..77134717,- | |||
|description=CAGE_peak_5_at_SCARB2_5end | |||
|id=chr4:77134706..77134717,- | |||
|ontology_enrichment_celltype=CL:0000055!2.15e-16!180;CL:0000057!2.63e-10!75;CL:0000680!3.59e-07!57;CL:0000056!3.59e-07!57;CL:0000355!3.59e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002334;7.48e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.17e-10,76;CL:0000680,1.37e-07,58;CL:0000056,1.37e-07,58;CL:0000355,1.37e-07,58;CL:0002334,9.26e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.43e-21!659;UBERON:0000480!3.08e-17!626;UBERON:0000467!5.96e-17!625;UBERON:0000475!8.79e-16!365;UBERON:0002050!2.32e-11!605;UBERON:0005423!2.32e-11!605;UBERON:0000922!2.36e-11!612;UBERON:0000923!3.81e-11!604;UBERON:0005291!3.81e-11!604;UBERON:0006598!3.81e-11!604;UBERON:0002532!3.81e-11!604;UBERON:0000477!4.22e-10!286;UBERON:0000119!8.25e-10!312;UBERON:0000483!1.15e-09!309;UBERON:0004872!4.19e-09!84;UBERON:0000481!5.35e-09!347;UBERON:0004111!6.20e-09!241;UBERON:0000062!1.03e-08!511;UBERON:0000914!1.77e-08!83;UBERON:0002329!1.77e-08!83;UBERON:0003077!1.77e-08!83;UBERON:0003059!1.77e-08!83;UBERON:0007282!1.77e-08!83;UBERON:0009618!1.77e-08!83;UBERON:0007285!1.77e-08!83;UBERON:0002049!1.94e-08!79;UBERON:0007798!1.94e-08!79;UBERON:0002100!8.21e-08!216;UBERON:0002385!1.33e-07!63;UBERON:0001015!1.33e-07!63;UBERON:0000383!1.33e-07!63;UBERON:0003102!1.69e-07!95;UBERON:0000490!1.71e-07!138;UBERON:0001134!2.57e-07!61;UBERON:0002036!2.57e-07!61;UBERON:0003082!2.57e-07!61;UBERON:0000486!2.81e-07!82;UBERON:0004290!5.28e-07!70 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002050,1.08e-10,564;UBERON:0000923,4.82e-10,560;UBERON:0010316,4.82e-10,560;UBERON:0005291,4.82e-10,560;UBERON:0006598,4.82e-10,560;UBERON:0010317,4.82e-10,560;UBERON:0002532,4.82e-10,560;UBERON:0000922,6.41e-10,592;UBERON:0005423,9.09e-10,581;UBERON:0000119,1.10e-09,309;UBERON:0000483,1.54e-09,306;UBERON:0004872,3.28e-09,83;UBERON:0002049,2.21e-08,78;UBERON:0007798,2.21e-08,78;UBERON:0004111,3.54e-08,240;UBERON:0003102,4.62e-08,99;UBERON:0002385,5.08e-08,64;UBERON:0001015,5.08e-08,64;UBERON:0000383,5.08e-08,64;UBERON:0001134,9.90e-08,62;UBERON:0002036,9.90e-08,62;UBERON:0003082,9.90e-08,62;UBERON:0000486,1.17e-07,83;UBERON:0000490,1.33e-07,148;UBERON:0007524,1.93e-07,73;UBERON:0002329,2.15e-07,71;UBERON:0003059,2.15e-07,71;UBERON:0007282,2.15e-07,71;UBERON:0004290,2.15e-07,71;UBERON:0009618,2.15e-07,71;UBERON:0003077,2.53e-07,72;UBERON:0007285,2.53e-07,72 | |||
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| ||
|short_description=p5@SCARB2 | |||
}} | }} |
Latest revision as of 17:30, 18 September 2015
Short description: | p5@SCARB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCARB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 35bp_to_ENST00000509994_5end |
EntrezGene: | SCARB2 |
HGNC: | 1665 |
UniProt: | D6RDG0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.17e-10 | 76 |
muscle precursor cell | 1.37e-07 | 58 |
myoblast | 1.37e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.37e-07 | 58 |
preadipocyte | 9.26e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
embryonic structure | 1.08e-10 | 564 |
germ layer | 4.82e-10 | 560 |
germ layer / neural crest | 4.82e-10 | 560 |
embryonic tissue | 4.82e-10 | 560 |
presumptive structure | 4.82e-10 | 560 |
germ layer / neural crest derived structure | 4.82e-10 | 560 |
epiblast (generic) | 4.82e-10 | 560 |
embryo | 6.41e-10 | 592 |
developing anatomical structure | 9.09e-10 | 581 |
cell layer | 1.10e-09 | 309 |
epithelium | 1.54e-09 | 306 |
splanchnic layer of lateral plate mesoderm | 3.28e-09 | 83 |
vasculature | 2.21e-08 | 78 |
vascular system | 2.21e-08 | 78 |
anatomical conduit | 3.54e-08 | 240 |
surface structure | 4.62e-08 | 99 |
muscle tissue | 5.08e-08 | 64 |
musculature | 5.08e-08 | 64 |
musculature of body | 5.08e-08 | 64 |
skeletal muscle tissue | 9.90e-08 | 62 |
striated muscle tissue | 9.90e-08 | 62 |
myotome | 9.90e-08 | 62 |
multilaminar epithelium | 1.17e-07 | 83 |
unilaminar epithelium | 1.33e-07 | 148 |
dense mesenchyme tissue | 1.93e-07 | 73 |
somite | 2.15e-07 | 71 |
presomitic mesoderm | 2.15e-07 | 71 |
presumptive segmental plate | 2.15e-07 | 71 |
dermomyotome | 2.15e-07 | 71 |
trunk paraxial mesoderm | 2.15e-07 | 71 |
paraxial mesoderm | 2.53e-07 | 72 |
presumptive paraxial mesoderm | 2.53e-07 | 72 |