FFCP PHASE1:Hg19::chr17:18087117..18087163,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:18087117..18087163,+
|short_description=p1@ALKBH5
|description=CAGE_peak_1_at_ALKBH5_5end
|association_with_transcript=-16bp_to_ENST00000500385_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54890 | |EntrezGene=54890 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25996 | |HGNC=25996 | ||
|TSSclassifier=strong | |||
|UniProt=F5H6G2 | |UniProt=F5H6G2 | ||
|association_with_transcript=-16bp_to_ENST00000500385_5end | |||
|cluster_id=chr17:18087117..18087163,+ | |||
|description=CAGE_peak_1_at_ALKBH5_5end | |||
|id=chr17:18087117..18087163,+ | |||
|ontology_enrichment_celltype=CL:0000838!2.78e-10!52;CL:0000542!9.35e-10!53;CL:0000051!9.35e-10!53;CL:0000084!2.76e-08!25;CL:0000827!2.76e-08!25;CL:0000791!3.29e-08!18;CL:0000789!3.29e-08!18;CL:0002420!3.29e-08!18;CL:0002419!3.29e-08!18;CL:0000790!3.29e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.76e-08;25!CL:0000791;3.08e-08;18!CL:0000789;3.08e-08;18!CL:0002419;3.08e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.78e-10,52;CL:0000542,9.35e-10,53;CL:0000051,9.35e-10,53;CL:0000084,2.76e-08,25;CL:0000827,2.76e-08,25;CL:0000791,3.29e-08,18;CL:0000789,3.29e-08,18;CL:0002420,3.29e-08,18;CL:0002419,3.29e-08,18;CL:0000790,3.29e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;3.08e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.74e-21!115;UBERON:0003075!4.82e-09!86;UBERON:0007284!4.82e-09!86;UBERON:0002346!1.19e-08!90;UBERON:0001049!4.10e-08!57;UBERON:0005068!4.10e-08!57;UBERON:0006241!4.10e-08!57;UBERON:0007135!4.10e-08!57;UBERON:0003056!1.63e-07!61;UBERON:0001008!6.64e-07!45;UBERON:0003080!8.30e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;8.75e-09;30!UBERON:0001008;8.75e-09;30!UBERON:0002113;2.77e-07;24!UBERON:0011143;2.77e-07;24!UBERON:0000489;8.74e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.73e-21,114;UBERON:0003075,5.91e-09,82;UBERON:0007284,5.91e-09,82;UBERON:0002346,1.50e-08,86;UBERON:0000073,7.79e-08,53;UBERON:0002616,7.79e-08,53;UBERON:0001049,1.10e-07,56;UBERON:0005068,1.10e-07,56;UBERON:0006241,1.10e-07,56;UBERON:0007135,1.10e-07,56;UBERON:0003056,1.85e-07,61;UBERON:0001008,3.90e-07,48 | |||
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| ||
|short_description=p1@ALKBH5 | |||
}} | }} |
Latest revision as of 22:41, 18 September 2015
Short description: | p1@ALKBH5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ALKBH5_5end |
Coexpression cluster: | NA |
Association with transcript: | -16bp_to_ENST00000500385_5end |
EntrezGene: | ALKBH5 |
HGNC: | 25996 |
UniProt: | F5H6G2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.78e-10 | 52 |
lymphocyte | 9.35e-10 | 53 |
common lymphoid progenitor | 9.35e-10 | 53 |
T cell | 2.76e-08 | 25 |
pro-T cell | 2.76e-08 | 25 |
mature alpha-beta T cell | 3.29e-08 | 18 |
alpha-beta T cell | 3.29e-08 | 18 |
immature T cell | 3.29e-08 | 18 |
mature T cell | 3.29e-08 | 18 |
immature alpha-beta T cell | 3.29e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.73e-21 | 114 |
neural plate | 5.91e-09 | 82 |
presumptive neural plate | 5.91e-09 | 82 |
neurectoderm | 1.50e-08 | 86 |
regional part of nervous system | 7.79e-08 | 53 |
regional part of brain | 7.79e-08 | 53 |
neural tube | 1.10e-07 | 56 |
neural rod | 1.10e-07 | 56 |
future spinal cord | 1.10e-07 | 56 |
neural keel | 1.10e-07 | 56 |
pre-chordal neural plate | 1.85e-07 | 61 |
renal system | 3.90e-07 | 48 |