FFCP PHASE1:Hg19::chr1:180601139..180601180,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9213 | |EntrezGene=9213 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12827 | |HGNC=12827 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UBH6 | |UniProt=Q9UBH6 | ||
|association_with_transcript=0bp_to_ENST00000367589,ENST00000367590,NM_001135669,NM_004736,uc001goi.2,uc009wxm.2,uc009wxn.2_5end | |association_with_transcript=0bp_to_ENST00000367589,ENST00000367590,NM_001135669,NM_004736,uc001goi.2,uc009wxm.2,uc009wxn.2_5end | ||
|cluster_id=chr1:180601139..180601180,+ | |||
|description=CAGE_peak_1_at_XPR1_5end | |description=CAGE_peak_1_at_XPR1_5end | ||
|id=chr1:180601139..180601180,+ | |id=chr1:180601139..180601180,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.51e-14!115;UBERON:0001017!6.91e-14!82;UBERON:0005743!2.43e-13!86;UBERON:0000073!6.34e-13!94;UBERON:0001016!6.34e-13!94;UBERON:0001049!2.03e-12!57;UBERON:0005068!2.03e-12!57;UBERON:0006241!2.03e-12!57;UBERON:0007135!2.03e-12!57;UBERON:0000955!4.37e-12!69;UBERON:0006238!4.37e-12!69;UBERON:0003080!8.20e-12!42;UBERON:0002780!1.08e-11!41;UBERON:0001890!1.08e-11!41;UBERON:0006240!1.08e-11!41;UBERON:0002616!3.80e-11!59;UBERON:0001893!1.79e-09!34;UBERON:0001869!2.41e-09!32;UBERON:0000956!2.66e-09!25;UBERON:0000203!2.66e-09!25;UBERON:0000153!4.32e-09!129;UBERON:0007811!4.32e-09!129;UBERON:0003075!4.87e-09!86;UBERON:0007284!4.87e-09!86;UBERON:0002020!5.56e-09!34;UBERON:0003528!5.56e-09!34;UBERON:0002791!5.73e-09!33;UBERON:0002619!1.96e-08!22;UBERON:0000033!2.28e-08!123;UBERON:0001950!2.89e-08!20;UBERON:0003056!3.36e-08!61;UBERON:0002346!4.56e-08!90;UBERON:0004121!3.13e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;2.41e-09;25!UBERON:0000203;2.41e-09;25!UBERON:0002780;5.91e-09;41!UBERON:0001890;5.91e-09;41!UBERON:0002619;2.04e-08;22!UBERON:0001893;2.06e-08;34!UBERON:0001869;2.09e-08;32!UBERON:0001950;2.39e-08;20!UBERON:0000073;2.75e-08;53!UBERON:0002616;2.75e-08;53!UBERON:0002791;5.05e-08;32!UBERON:0003528;7.49e-08;34!UBERON:0002020;7.49e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.69e-14,81;UBERON:0007023,1.06e-13,114;UBERON:0001016,2.99e-13,89;UBERON:0001049,2.78e-12,56;UBERON:0005068,2.78e-12,56;UBERON:0006241,2.78e-12,56;UBERON:0007135,2.78e-12,56;UBERON:0000955,6.07e-12,68;UBERON:0006238,6.07e-12,68;UBERON:0000073,6.63e-12,53;UBERON:0002616,6.63e-12,53;UBERON:0002780,1.08e-11,41;UBERON:0001890,1.08e-11,41;UBERON:0003080,1.08e-11,41;UBERON:0006240,1.08e-11,41;UBERON:0001893,1.79e-09,34;UBERON:0001869,2.41e-09,32;UBERON:0000956,2.66e-09,25;UBERON:0000203,2.66e-09,25;UBERON:0003528,5.56e-09,34;UBERON:0002020,5.56e-09,34;UBERON:0002791,8.33e-09,32;UBERON:0002619,1.96e-08,22;UBERON:0001950,2.89e-08,20;UBERON:0003075,4.58e-08,82;UBERON:0007284,4.58e-08,82;UBERON:0003056,1.40e-07,61;UBERON:0011216,3.39e-07,223;UBERON:0002346,3.76e-07,86 | |||
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| ||
|short_description=p1@XPR1 | |short_description=p1@XPR1 | ||
}} | }} |
Latest revision as of 23:36, 18 September 2015
Short description: | p1@XPR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_XPR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367589, ENST00000367590, NM_001135669, NM_004736, uc001goi.2, uc009wxm.2, uc009wxn.2_5end |
EntrezGene: | XPR1 |
HGNC: | 12827 |
UniProt: | Q9UBH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.69e-14 | 81 |
adult organism | 1.06e-13 | 114 |
nervous system | 2.99e-13 | 89 |
neural tube | 2.78e-12 | 56 |
neural rod | 2.78e-12 | 56 |
future spinal cord | 2.78e-12 | 56 |
neural keel | 2.78e-12 | 56 |
brain | 6.07e-12 | 68 |
future brain | 6.07e-12 | 68 |
regional part of nervous system | 6.63e-12 | 53 |
regional part of brain | 6.63e-12 | 53 |
regional part of forebrain | 1.08e-11 | 41 |
forebrain | 1.08e-11 | 41 |
anterior neural tube | 1.08e-11 | 41 |
future forebrain | 1.08e-11 | 41 |
telencephalon | 1.79e-09 | 34 |
cerebral hemisphere | 2.41e-09 | 32 |
cerebral cortex | 2.66e-09 | 25 |
pallium | 2.66e-09 | 25 |
brain grey matter | 5.56e-09 | 34 |
gray matter | 5.56e-09 | 34 |
regional part of telencephalon | 8.33e-09 | 32 |
regional part of cerebral cortex | 1.96e-08 | 22 |
neocortex | 2.89e-08 | 20 |
neural plate | 4.58e-08 | 82 |
presumptive neural plate | 4.58e-08 | 82 |
pre-chordal neural plate | 1.40e-07 | 61 |
organ system subdivision | 3.39e-07 | 223 |
neurectoderm | 3.76e-07 | 86 |