FFCP PHASE1:Hg19::chr12:54121215..54121254,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57658 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29306 | |||
|TSSclassifier=strong | |||
|UniProt=E7EWT6,E9PAU0,B4DKB9,F8VRQ9,F8VNZ7,F8VQD2,F8VZI3,F8VXS2,F8VPN1,B4DG60,F8VQE3,F8W083 | |||
|association_with_transcript=0bp_to_ENST00000413257,ENST00000430117,ENST00000454332,ENST00000546619,ENST00000546774,ENST00000547885,ENST00000547988,ENST00000548177,ENST00000549173,ENST00000549349,ENST00000549935,ENST00000550804,ENST00000551900,ENST00000553154_5end | |||
|cluster_id=chr12:54121215..54121254,- | |||
|description=CAGE_peak_1_at_CALCOCO1_5end | |||
|id=chr12:54121215..54121254,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.71e-46!115;UBERON:0001049!1.05e-19!57;UBERON:0005068!1.05e-19!57;UBERON:0006241!1.05e-19!57;UBERON:0007135!1.05e-19!57;UBERON:0002616!6.54e-18!59;UBERON:0003080!4.35e-15!42;UBERON:0002780!5.79e-15!41;UBERON:0001890!5.79e-15!41;UBERON:0006240!5.79e-15!41;UBERON:0003075!9.88e-15!86;UBERON:0007284!9.88e-15!86;UBERON:0000955!1.40e-14!69;UBERON:0006238!1.40e-14!69;UBERON:0002346!1.93e-14!90;UBERON:0001893!5.13e-13!34;UBERON:0002020!8.83e-13!34;UBERON:0003528!8.83e-13!34;UBERON:0005743!1.13e-12!86;UBERON:0002791!1.36e-12!33;UBERON:0001017!1.48e-12!82;UBERON:0001869!6.40e-12!32;UBERON:0002619!6.07e-11!22;UBERON:0000073!8.10e-11!94;UBERON:0001016!8.10e-11!94;UBERON:0000153!9.32e-11!129;UBERON:0007811!9.32e-11!129;UBERON:0001950!3.92e-10!20;UBERON:0000033!3.96e-10!123;UBERON:0003056!4.43e-10!61;UBERON:0000956!1.02e-08!25;UBERON:0000203!1.02e-08!25;UBERON:0000924!6.99e-08!173;UBERON:0006601!6.99e-08!173;UBERON:0004121!7.14e-08!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.31e-11;114!UBERON:0000073;3.02e-11;53!UBERON:0002616;3.02e-11;53!UBERON:0002780;3.18e-11;41!UBERON:0001890;3.18e-11;41!UBERON:0001893;3.51e-11;34!UBERON:0002619;5.99e-11;22!UBERON:0003528;6.93e-11;34!UBERON:0002020;6.93e-11;34!UBERON:0002791;8.06e-11;32!UBERON:0001869;1.15e-10;32!UBERON:0001950;3.84e-10;20!UBERON:0000956;9.23e-09;25!UBERON:0000203;9.23e-09;25!UBERON:0001017;5.40e-07;75!UBERON:0000955;6.20e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.46e-45,114;UBERON:0001049,1.43e-19,56;UBERON:0005068,1.43e-19,56;UBERON:0006241,1.43e-19,56;UBERON:0007135,1.43e-19,56;UBERON:0000073,9.34e-19,53;UBERON:0002616,9.34e-19,53;UBERON:0003075,2.93e-15,82;UBERON:0007284,2.93e-15,82;UBERON:0002780,5.79e-15,41;UBERON:0001890,5.79e-15,41;UBERON:0003080,5.79e-15,41;UBERON:0006240,5.79e-15,41;UBERON:0002346,6.26e-15,86;UBERON:0000955,2.03e-14,68;UBERON:0006238,2.03e-14,68;UBERON:0001893,5.13e-13,34;UBERON:0003528,8.83e-13,34;UBERON:0002020,8.83e-13,34;UBERON:0001017,2.16e-12,81;UBERON:0010371,3.26e-12,104;UBERON:0002791,4.66e-12,32;UBERON:0001869,6.40e-12,32;UBERON:0010314,4.39e-11,132;UBERON:0002619,6.07e-11,22;UBERON:0001016,1.69e-10,89;UBERON:0001950,3.92e-10,20;UBERON:0003056,4.71e-10,61;UBERON:0000956,1.02e-08,25;UBERON:0000203,1.02e-08,25;UBERON:0004121,1.61e-08,171;UBERON:0000924,1.61e-08,171;UBERON:0006601,1.61e-08,171 | |||
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| |||
|short_description=p1@CALCOCO1 | |||
}} |
Latest revision as of 03:52, 19 September 2015
Short description: | p1@CALCOCO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CALCOCO1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000413257, ENST00000430117, ENST00000454332, ENST00000546619, ENST00000546774, ENST00000547885, ENST00000547988, ENST00000548177, ENST00000549173, ENST00000549349, ENST00000549935, ENST00000550804, ENST00000551900, ENST00000553154_5end |
EntrezGene: | CALCOCO1 |
HGNC: | 29306 |
UniProt: | E7EWT6E9PAU0B4DKB9F8VRQ9F8VNZ7F8VQD2F8VZI3F8VXS2F8VPN1B4DG60F8VQE3F8W083 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.46e-45 | 114 |
neural tube | 1.43e-19 | 56 |
neural rod | 1.43e-19 | 56 |
future spinal cord | 1.43e-19 | 56 |
neural keel | 1.43e-19 | 56 |
regional part of nervous system | 9.34e-19 | 53 |
regional part of brain | 9.34e-19 | 53 |
neural plate | 2.93e-15 | 82 |
presumptive neural plate | 2.93e-15 | 82 |
regional part of forebrain | 5.79e-15 | 41 |
forebrain | 5.79e-15 | 41 |
anterior neural tube | 5.79e-15 | 41 |
future forebrain | 5.79e-15 | 41 |
neurectoderm | 6.26e-15 | 86 |
brain | 2.03e-14 | 68 |
future brain | 2.03e-14 | 68 |
telencephalon | 5.13e-13 | 34 |
brain grey matter | 8.83e-13 | 34 |
gray matter | 8.83e-13 | 34 |
central nervous system | 2.16e-12 | 81 |
ecto-epithelium | 3.26e-12 | 104 |
regional part of telencephalon | 4.66e-12 | 32 |
cerebral hemisphere | 6.40e-12 | 32 |
structure with developmental contribution from neural crest | 4.39e-11 | 132 |
regional part of cerebral cortex | 6.07e-11 | 22 |
nervous system | 1.69e-10 | 89 |
neocortex | 3.92e-10 | 20 |
pre-chordal neural plate | 4.71e-10 | 61 |
cerebral cortex | 1.02e-08 | 25 |
pallium | 1.02e-08 | 25 |
ectoderm-derived structure | 1.61e-08 | 171 |
ectoderm | 1.61e-08 | 171 |
presumptive ectoderm | 1.61e-08 | 171 |