FFCP PHASE1:Hg19::chr14:22508769..22508780,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12117 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-59bp_to_ENST00000390448_5end | |||
|cluster_id=chr14:22508769..22508780,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_TRAV20_5end | |||
|id=chr14:22508769..22508780,+ | |||
|ontology_enrichment_celltype=CL:0000791!9.58e-42!18;CL:0000789!9.58e-42!18;CL:0002420!9.58e-42!18;CL:0002419!9.58e-42!18;CL:0000790!9.58e-42!18;CL:0000625!2.04e-29!11;CL:0000084!1.15e-28!25;CL:0000827!1.15e-28!25;CL:0000624!1.19e-16!6;CL:0000838!1.69e-14!52;CL:0000542!3.98e-14!53;CL:0000051!3.98e-14!53;CL:0000898!1.21e-09!3;CL:0002087!2.42e-08!119;CL:0000842!4.28e-08!3;CL:0000738!1.60e-07!140;CL:0000815!7.06e-07!2;CL:0000792!7.06e-07!2;CL:0002677!7.06e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.90e-59;18!CL:0000789;5.90e-59;18!CL:0002419;5.90e-59;18!CL:0000084;1.25e-41;25!CL:0000625;1.02e-40;11!CL:0000624;2.32e-23;6!CL:0000898;3.17e-18;3!CL:0000815;1.53e-12;2!CL:0000792;1.53e-12;2!CL:0002677;1.53e-12;2!CL:0000542;5.65e-10;53!CL:0000895;2.09e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.38e-59,18;CL:0000789,7.38e-59,18;CL:0002420,7.38e-59,18;CL:0002419,7.38e-59,18;CL:0000790,7.38e-59,18;CL:0000084,1.46e-41,25;CL:0000827,1.46e-41,25;CL:0000625,1.04e-40,11;CL:0000624,2.87e-23,6;CL:0000838,1.88e-18,52;CL:0000898,3.27e-18,3;CL:0000542,4.76e-18,53;CL:0000051,4.76e-18,53;CL:0000815,1.58e-12,2;CL:0000792,1.58e-12,2;CL:0002677,1.58e-12,2;CL:0000810,2.09e-07,1;CL:0000895,2.09e-07,1;CL:0002436,2.09e-07,1;CL:0002427,2.09e-07,1;CL:0002428,2.09e-07,1;CL:0002429,2.09e-07,1;CL:0002433,2.09e-07,1;CL:0002431,2.09e-07,1;CL:0002432,2.09e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;5.90e-59;18!CL:0000051;5.65e-10;53!CL:0002427;2.09e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.16e-19!15;UBERON:0000179!6.16e-19!15;UBERON:0000463!6.16e-19!15;UBERON:0007023!1.74e-10!115;UBERON:0004177!3.29e-09!7;UBERON:0002370!6.12e-07!4;UBERON:0005058!6.12e-07!4;UBERON:0009113!6.12e-07!4;UBERON:0003295!6.12e-07!4;UBERON:0005562!6.12e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.26e-11;2!UBERON:0005058;1.26e-11;2!UBERON:0009113;1.26e-11;2!UBERON:0000178;9.00e-09;15!UBERON:0000179;9.00e-09;15!UBERON:0000463;9.00e-09;15!UBERON:0002390;6.66e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.85e-13,4;UBERON:0005058,4.85e-13,4;UBERON:0009113,4.85e-13,4;UBERON:0003295,4.85e-13,4;UBERON:0005562,4.85e-13,4;UBERON:0003351,7.40e-09,6;UBERON:0000178,8.19e-09,15;UBERON:0000179,8.19e-09,15;UBERON:0000463,8.19e-09,15;UBERON:0004177,1.18e-07,7;UBERON:0005057,1.18e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971680998056939,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983548850569165,1.17903228824749,1.43921049299656,3.8452893939856,3.58514493296949,2.8406868344084,0,6.12757512868455,4.71369451959739,3.54454231333794,4.33286182024025,2.43373507478783,2.21100890851793,2.95988228286617,4.14525026678773,5.79606171470105,2.07601188426885,1.60524496853828,0,5.89208582027344,19.544245173698,2.74901956386104,4.80737414837055,5.09704662918555,3.90650072313851,4.75226022224187,2.86092726247768,3.19966527886046,8.74515085866421,3.78843603270427,9.85353596305256,1.20964045934839,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.196468613246569,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985153801009636,0,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.215714200818617,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0.764637207142375,0.569647187174163,1.66762242820452,0.411362273086194,1.29694662238543,1.62009431171434,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.320362237703084,0.157204305099666,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.265729680626726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0.548257766857182,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0,0,0,0.281951753939561,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,1.29177819672012,1.24149428591716,0,0,0,0,0,0.875576689189638,0.143444410785353,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |||
|short_description=p2@TRAV20 | |||
}} | |||
Latest revision as of 04:36, 19 September 2015
| Short description: | p2@TRAV20 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_TRAV20_5end |
| Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
| Association with transcript: | -59bp_to_ENST00000390448_5end |
| EntrezGene: | NA |
| HGNC: | 12117 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mature alpha-beta T cell | 7.38e-59 | 18 |
| alpha-beta T cell | 7.38e-59 | 18 |
| immature T cell | 7.38e-59 | 18 |
| mature T cell | 7.38e-59 | 18 |
| immature alpha-beta T cell | 7.38e-59 | 18 |
| T cell | 1.46e-41 | 25 |
| pro-T cell | 1.46e-41 | 25 |
| CD8-positive, alpha-beta T cell | 1.04e-40 | 11 |
| CD4-positive, alpha-beta T cell | 2.87e-23 | 6 |
| lymphoid lineage restricted progenitor cell | 1.88e-18 | 52 |
| naive T cell | 3.27e-18 | 3 |
| lymphocyte | 4.76e-18 | 53 |
| common lymphoid progenitor | 4.76e-18 | 53 |
| regulatory T cell | 1.58e-12 | 2 |
| CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.58e-12 | 2 |
| naive regulatory T cell | 1.58e-12 | 2 |
| CD4-positive, alpha-beta thymocyte | 2.09e-07 | 1 |
| naive thymus-derived CD4-positive, alpha-beta T cell | 2.09e-07 | 1 |
| mature CD4 single-positive thymocyte | 2.09e-07 | 1 |
| resting double-positive thymocyte | 2.09e-07 | 1 |
| double-positive blast | 2.09e-07 | 1 |
| CD69-positive double-positive thymocyte | 2.09e-07 | 1 |
| CD69-positive, CD4-positive single-positive thymocyte | 2.09e-07 | 1 |
| CD4-positive, CD8-intermediate double-positive thymocyte | 2.09e-07 | 1 |
| CD24-positive, CD4 single-positive thymocyte | 2.09e-07 | 1 |
| Ontology term | p-value | n |
|---|---|---|
| thymus | 4.85e-13 | 4 |
| hemolymphoid system gland | 4.85e-13 | 4 |
| thymic region | 4.85e-13 | 4 |
| pharyngeal gland | 4.85e-13 | 4 |
| thymus primordium | 4.85e-13 | 4 |
| pharyngeal epithelium | 7.40e-09 | 6 |
| blood | 8.19e-09 | 15 |
| haemolymphatic fluid | 8.19e-09 | 15 |
| organism substance | 8.19e-09 | 15 |
| hemopoietic organ | 1.18e-07 | 7 |
| immune organ | 1.18e-07 | 7 |