FFCP PHASE1:Hg19::chr14:22670420..22670433,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12124 | |HGNC=12124 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-43bp_to_ENST00000390460,uc001wdj.2,uc010ajm.1_5end | |association_with_transcript=-43bp_to_ENST00000390460,uc001wdj.2,uc010ajm.1_5end | ||
|cluster_id=chr14:22670420..22670433,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_TRAV26-2_5end | |description=CAGE_peak_3_at_TRAV26-2_5end | ||
|id=chr14:22670420..22670433,+ | |id=chr14:22670420..22670433,+ | ||
|ontology_enrichment_celltype=CL:0000791!6.08e-46!18;CL:0000789!6.08e-46!18;CL:0002420!6.08e-46!18;CL:0002419!6.08e-46!18;CL:0000790!6.08e-46!18;CL:0000084!1.18e-35!25;CL:0000827!1.18e-35!25;CL:0000625!4.27e-32!11;CL:0000624!2.23e-18!6;CL:0000838!2.50e-18!52;CL:0000542!6.97e-18!53;CL:0000051!6.97e-18!53;CL:0002087!2.56e-11!119;CL:0000738!1.94e-10!140;CL:0000898!3.01e-10!3;CL:0000842!6.11e-10!3;CL:0002031!8.97e-08!124;CL:0000224!1.51e-07!4;CL:0000815!2.25e-07!2;CL:0000792!2.25e-07!2;CL:0002677!2.25e-07!2;CL:0000037!2.92e-07!172;CL:0000566!2.92e-07!172 | |ontology_enrichment_celltype=CL:0000791!6.08e-46!18;CL:0000789!6.08e-46!18;CL:0002420!6.08e-46!18;CL:0002419!6.08e-46!18;CL:0000790!6.08e-46!18;CL:0000084!1.18e-35!25;CL:0000827!1.18e-35!25;CL:0000625!4.27e-32!11;CL:0000624!2.23e-18!6;CL:0000838!2.50e-18!52;CL:0000542!6.97e-18!53;CL:0000051!6.97e-18!53;CL:0002087!2.56e-11!119;CL:0000738!1.94e-10!140;CL:0000898!3.01e-10!3;CL:0000842!6.11e-10!3;CL:0002031!8.97e-08!124;CL:0000224!1.51e-07!4;CL:0000815!2.25e-07!2;CL:0000792!2.25e-07!2;CL:0002677!2.25e-07!2;CL:0000037!2.92e-07!172;CL:0000566!2.92e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.12e-46;18!CL:0000789;5.12e-46;18!CL:0002419;5.12e-46;18!CL:0000084;2.16e-32;25!CL:0000625;3.42e-29;11!CL:0000624;1.89e-21;6!CL:0000898;2.16e-16;3!CL:0000815;1.90e-11;2!CL:0000792;1.90e-11;2!CL:0002677;1.90e-11;2!CL:0000226;5.44e-08;3!CL:0000842;5.44e-08;3!CL:0000542;1.12e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.02e-46,18;CL:0000789,3.02e-46,18;CL:0002420,3.02e-46,18;CL:0002419,3.02e-46,18;CL:0000790,3.02e-46,18;CL:0000084,1.49e-32,25;CL:0000827,1.49e-32,25;CL:0000625,2.53e-29,11;CL:0000624,1.46e-21,6;CL:0000898,1.99e-16,3;CL:0000838,2.87e-14,52;CL:0000542,5.97e-14,53;CL:0000051,5.97e-14,53;CL:0000815,1.62e-11,2;CL:0000792,1.62e-11,2;CL:0002677,1.62e-11,2;CL:0000226,5.44e-08,3;CL:0000842,5.44e-08,3;CL:0002087,5.64e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;5.12e-46;18!CL:0000051;1.12e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.21e-18!15;UBERON:0000179!2.21e-18!15;UBERON:0000463!2.21e-18!15;UBERON:0004177!1.09e-10!7;UBERON:0002370!1.10e-07!4;UBERON:0005058!1.10e-07!4;UBERON:0009113!1.10e-07!4;UBERON:0003295!1.10e-07!4;UBERON:0005562!1.10e-07!4 | |ontology_enrichment_uberon=UBERON:0000178!2.21e-18!15;UBERON:0000179!2.21e-18!15;UBERON:0000463!2.21e-18!15;UBERON:0004177!1.09e-10!7;UBERON:0002370!1.10e-07!4;UBERON:0005058!1.10e-07!4;UBERON:0009113!1.10e-07!4;UBERON:0003295!1.10e-07!4;UBERON:0005562!1.10e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.90e-12;15!UBERON:0000179;5.90e-12;15!UBERON:0000463;5.90e-12;15!UBERON:0002370;2.61e-11;2!UBERON:0005058;2.61e-11;2!UBERON:0009113;2.61e-11;2!UBERON:0002390;2.50e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.66e-12,4;UBERON:0005058,2.66e-12,4;UBERON:0009113,2.66e-12,4;UBERON:0003295,2.66e-12,4;UBERON:0005562,2.66e-12,4;UBERON:0000178,6.99e-12,15;UBERON:0000179,6.99e-12,15;UBERON:0000463,6.99e-12,15;UBERON:0003351,2.32e-08,6;UBERON:0004177,3.15e-07,7;UBERON:0005057,3.15e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0.154816123316076,0,0,0,0,0,0,0,0,0,0.671746422719773,0,0.515151135268373,0,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,1.57204305099666,2.87842098599313,6.18590032945509,4.56291173287027,4.73447805734733,0,7.68732152507698,1.76763544484902,7.3106185212595,6.77009659412539,3.71464827204458,8.45385759139208,10.1951500854279,9.67225062250469,4.05724320029073,2.81744470007915,4.54819407752512,5.22677619024884,4.30575502250752,3.44898444241729,3.09264700934367,5.81945291644857,4.77848121486145,1.30216690771284,1.90090408889675,3.91495309602209,2.30375900077953,2.49861453104692,3.78843603270427,4.10563998460523,0.80642697289893,0.267440195783507,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,0.431428401637234,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0.764637207142375,1.13929437434833,0.476463550915578,2.05681136543097,0.648473311192717,3.7802200606668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.375935671919414,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58355639344024,2.11054028605917,0,0.0636471582781649,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15148819429164,0.154816123316076,0,0,0,0,0,0,0,0,0,0.671746422719773,0,0.515151135268373,0,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786839080455332,1.57204305099666,2.87842098599313,6.18590032945509,4.56291173287027,4.73447805734733,0,7.68732152507698,1.76763544484902,7.3106185212595,6.77009659412539,3.71464827204458,8.45385759139208,10.1951500854279,9.67225062250469,4.05724320029073,2.81744470007915,4.54819407752512,5.22677619024884,4.30575502250752,3.44898444241729,3.09264700934367,5.81945291644857,4.77848121486145,1.30216690771284,1.90090408889675,3.91495309602209,2.30375900077953,2.49861453104692,3.78843603270427,4.10563998460523,0.80642697289893,0.267440195783507,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24060815673732,0.431428401637234,5.87001567918944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02979043692868,0.764637207142375,1.13929437434833,0.476463550915578,2.05681136543097,0.648473311192717,3.7802200606668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329607748453519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.375935671919414,0.257831551894309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.58355639344024,2.11054028605917,0,0.0636471582781649,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p3@TRAV26-2 | |short_description=p3@TRAV26-2 | ||
}} | }} |
Latest revision as of 05:02, 19 September 2015
Short description: | p3@TRAV26-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRAV26-2_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -43bp_to_ENST00000390460, uc001wdj.2, uc010ajm.1_5end |
EntrezGene: | NA |
HGNC: | 12124 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.02e-46 | 18 |
alpha-beta T cell | 3.02e-46 | 18 |
immature T cell | 3.02e-46 | 18 |
mature T cell | 3.02e-46 | 18 |
immature alpha-beta T cell | 3.02e-46 | 18 |
T cell | 1.49e-32 | 25 |
pro-T cell | 1.49e-32 | 25 |
CD8-positive, alpha-beta T cell | 2.53e-29 | 11 |
CD4-positive, alpha-beta T cell | 1.46e-21 | 6 |
naive T cell | 1.99e-16 | 3 |
lymphoid lineage restricted progenitor cell | 2.87e-14 | 52 |
lymphocyte | 5.97e-14 | 53 |
common lymphoid progenitor | 5.97e-14 | 53 |
regulatory T cell | 1.62e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.62e-11 | 2 |
naive regulatory T cell | 1.62e-11 | 2 |
single nucleate cell | 5.44e-08 | 3 |
mononuclear cell | 5.44e-08 | 3 |
nongranular leukocyte | 5.64e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.66e-12 | 4 |
hemolymphoid system gland | 2.66e-12 | 4 |
thymic region | 2.66e-12 | 4 |
pharyngeal gland | 2.66e-12 | 4 |
thymus primordium | 2.66e-12 | 4 |
blood | 6.99e-12 | 15 |
haemolymphatic fluid | 6.99e-12 | 15 |
organism substance | 6.99e-12 | 15 |
pharyngeal epithelium | 2.32e-08 | 6 |
hemopoietic organ | 3.15e-07 | 7 |
immune organ | 3.15e-07 | 7 |