FFCP PHASE1:Hg19::chr17:27038859..27038910,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=147011 | |EntrezGene=147011 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28600 | |HGNC=28600 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NCQ7 | |UniProt=Q8NCQ7 | ||
|association_with_transcript=0bp_to_ENST00000301039,NM_152465,uc002hca.1_5end | |association_with_transcript=0bp_to_ENST00000301039,NM_152465,uc002hca.1_5end | ||
|cluster_id=chr17:27038859..27038910,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_3_at_PROCA1_5end | |description=CAGE_peak_3_at_PROCA1_5end | ||
|id=chr17:27038859..27038910,- | |id=chr17:27038859..27038910,- | ||
|ontology_enrichment_celltype=CL:0002032;1.10e-13;1!CL:0000557;1.10e-13;1!CL:0000047;1.75e-07;2!CL:0000764;1.75e-07;2!CL:0000558;1.75e-07;2 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0002032;1.10e-13;1!CL:0000557;1.10e-13;1!CL:0000047;1.75e-07;2!CL:0000764;1.75e-07;2!CL:0000558;1.75e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000764,2.40e-07,2;CL:0000765,2.40e-07,2;CL:0000050,2.40e-07,2;CL:0000038,2.40e-07,2;CL:0000558,2.40e-07,2;CL:0000547,2.40e-07,2;CL:0000549,2.40e-07,2;CL:0000550,2.40e-07,2;CL:0000552,2.40e-07,2;CL:0000047,3.67e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.11e-17;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002581;1.10e-13;1!UBERON:0002902;1.10e-13;1!UBERON:0009899;1.10e-13;1!UBERON:0002680;6.12e-13;9!UBERON:0001895;6.12e-13;9!UBERON:0004733;7.54e-10;12!UBERON:0002028;7.54e-10;12!UBERON:0001950;1.01e-09;20!UBERON:0000200;3.56e-09;6!UBERON:0002037;3.56e-09;6!UBERON:0004732;3.92e-09;13!UBERON:0002619;6.76e-09;22!UBERON:0000956;6.82e-08;25!UBERON:0000203;6.82e-08;25!UBERON:0002702;1.75e-07;2!UBERON:0000473;2.37e-07;8!UBERON:0000955;8.63e-07;68 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.61e-32!57;UBERON:0005068!1.61e-32!57;UBERON:0006241!1.61e-32!57;UBERON:0007135!1.61e-32!57;UBERON:0001017!2.75e-29!82;UBERON:0002616!4.94e-29!59;UBERON:0000073!9.36e-29!94;UBERON:0001016!9.36e-29!94;UBERON:0005743!2.78e-28!86;UBERON:0002780!4.95e-27!41;UBERON:0001890!4.95e-27!41;UBERON:0006240!4.95e-27!41;UBERON:0000955!6.30e-27!69;UBERON:0006238!6.30e-27!69;UBERON:0002020!1.18e-26!34;UBERON:0003528!1.18e-26!34;UBERON:0001893!2.86e-26!34;UBERON:0003080!4.05e-26!42;UBERON:0007023!1.45e-25!115;UBERON:0002791!3.91e-25!33;UBERON:0001869!1.05e-24!32;UBERON:0003075!9.02e-23!86;UBERON:0007284!9.02e-23!86;UBERON:0002346!4.82e-21!90;UBERON:0000956!6.34e-19!25;UBERON:0000203!6.34e-19!25;UBERON:0002619!9.72e-19!22;UBERON:0003056!9.02e-17!61;UBERON:0001950!2.23e-16!20;UBERON:0004121!4.35e-14!169;UBERON:0000924!2.45e-13!173;UBERON:0006601!2.45e-13!173;UBERON:0000033!5.26e-13!123;UBERON:0000153!2.74e-12!129;UBERON:0007811!2.74e-12!129;UBERON:0002308!3.18e-09!9;UBERON:0000125!3.18e-09!9;UBERON:0000200!7.00e-09!6;UBERON:0004733!4.05e-08!12;UBERON:0002028!4.05e-08!12;UBERON:0007277!4.05e-08!12;UBERON:0003076!1.27e-07!15;UBERON:0003057!1.27e-07!15;UBERON:0004732!2.60e-07!13;UBERON:0009663!4.63e-07!7;UBERON:0002680!5.03e-07!9;UBERON:0001895!5.03e-07!9;UBERON:0010092!5.03e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002581;1.10e-13;1!UBERON:0002902;1.10e-13;1!UBERON:0009899;1.10e-13;1!UBERON:0002680;6.12e-13;9!UBERON:0001895;6.12e-13;9!UBERON:0004733;7.54e-10;12!UBERON:0002028;7.54e-10;12!UBERON:0001950;1.01e-09;20!UBERON:0000200;3.56e-09;6!UBERON:0002037;3.56e-09;6!UBERON:0004732;3.92e-09;13!UBERON:0002619;6.76e-09;22!UBERON:0000956;6.82e-08;25!UBERON:0000203;6.82e-08;25!UBERON:0002702;1.75e-07;2!UBERON:0000473;2.37e-07;8!UBERON:0000955;8.63e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.03e-13,81;UBERON:0002581,1.25e-13,1;UBERON:0002902,1.42e-13,1;UBERON:0009899,1.42e-13,1;UBERON:0002680,6.93e-13,9;UBERON:0001895,6.93e-13,9;UBERON:0010092,6.93e-13,9;UBERON:0001016,2.96e-12,89;UBERON:0000073,1.31e-10,53;UBERON:0002616,1.31e-10,53;UBERON:0000955,1.68e-10,68;UBERON:0006238,1.68e-10,68;UBERON:0001049,5.07e-10,56;UBERON:0005068,5.07e-10,56;UBERON:0006241,5.07e-10,56;UBERON:0007135,5.07e-10,56;UBERON:0004733,8.26e-10,12;UBERON:0002028,8.26e-10,12;UBERON:0007277,8.26e-10,12;UBERON:0001950,1.08e-09,20;UBERON:0002037,3.56e-09,6;UBERON:0006215,3.56e-09,6;UBERON:0000200,3.71e-09,6;UBERON:0004732,4.26e-09,13;UBERON:0002619,7.21e-09,22;UBERON:0003076,5.93e-08,15;UBERON:0003057,5.93e-08,15;UBERON:0000956,7.21e-08,25;UBERON:0000203,7.21e-08,25;UBERON:0002702,1.75e-07,2;UBERON:0000473,2.37e-07,8;UBERON:0004121,3.11e-07,171;UBERON:0000924,3.11e-07,171;UBERON:0006601,3.11e-07,171 | |||
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| ||
|short_description=p3@PROCA1 | |short_description=p3@PROCA1 | ||
}} | }} |
Latest revision as of 06:56, 19 September 2015
Short description: | p3@PROCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PROCA1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000301039, NM_152465, uc002hca.1_5end |
EntrezGene: | PROCA1 |
HGNC: | 28600 |
UniProt: | Q8NCQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 2.40e-07 | 2 |
erythroblast | 2.40e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 2.40e-07 | 2 |
erythroid progenitor cell | 2.40e-07 | 2 |
reticulocyte | 2.40e-07 | 2 |
proerythroblast | 2.40e-07 | 2 |
basophilic erythroblast | 2.40e-07 | 2 |
polychromatophilic erythroblast | 2.40e-07 | 2 |
orthochromatic erythroblast | 2.40e-07 | 2 |
neuronal stem cell | 3.67e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.03e-13 | 81 |
postcentral gyrus | 1.25e-13 | 1 |
occipital pole | 1.42e-13 | 1 |
pole of cerebral hemisphere | 1.42e-13 | 1 |
regional part of metencephalon | 6.93e-13 | 9 |
metencephalon | 6.93e-13 | 9 |
future metencephalon | 6.93e-13 | 9 |
nervous system | 2.96e-12 | 89 |
regional part of nervous system | 1.31e-10 | 53 |
regional part of brain | 1.31e-10 | 53 |
brain | 1.68e-10 | 68 |
future brain | 1.68e-10 | 68 |
neural tube | 5.07e-10 | 56 |
neural rod | 5.07e-10 | 56 |
future spinal cord | 5.07e-10 | 56 |
neural keel | 5.07e-10 | 56 |
segmental subdivision of hindbrain | 8.26e-10 | 12 |
hindbrain | 8.26e-10 | 12 |
presumptive hindbrain | 8.26e-10 | 12 |
neocortex | 1.08e-09 | 20 |
cerebellum | 3.56e-09 | 6 |
rhombic lip | 3.56e-09 | 6 |
gyrus | 3.71e-09 | 6 |
segmental subdivision of nervous system | 4.26e-09 | 13 |
regional part of cerebral cortex | 7.21e-09 | 22 |
posterior neural tube | 5.93e-08 | 15 |
chordal neural plate | 5.93e-08 | 15 |
cerebral cortex | 7.21e-08 | 25 |
pallium | 7.21e-08 | 25 |
middle frontal gyrus | 1.75e-07 | 2 |
testis | 2.37e-07 | 8 |
ectoderm-derived structure | 3.11e-07 | 171 |
ectoderm | 3.11e-07 | 171 |
presumptive ectoderm | 3.11e-07 | 171 |