FFCP PHASE1:Hg19::chr2:202316434..202316491,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55437 | |EntrezGene=55437 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13205 | |HGNC=13205 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCQ7 | |UniProt=F8WCQ7 | ||
|association_with_transcript=0bp_to_ENST00000447698,ENST00000488196,ENST00000539670_5end | |association_with_transcript=0bp_to_ENST00000447698,ENST00000488196,ENST00000539670_5end | ||
|cluster_id=chr2:202316434..202316491,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_1_at_STRADB_5end | |description=CAGE_peak_1_at_STRADB_5end | ||
|id=chr2:202316434..202316491,+ | |id=chr2:202316434..202316491,+ | ||
|ontology_enrichment_celltype=CL:0000055!4.28e-15!180;CL:0000680!2.52e-13!57;CL:0000056!2.52e-13!57;CL:0000355!2.52e-13!57;CL:0000187!1.49e-12!54;CL:0000183!1.89e-12!59;CL:0000393!1.41e-11!60;CL:0000211!1.41e-11!60;CL:0000192!8.46e-11!42;CL:0000514!8.46e-11!42;CL:0000359!2.99e-07!32;CL:0000222!3.43e-07!119 | |ontology_enrichment_celltype=CL:0000055!4.28e-15!180;CL:0000680!2.52e-13!57;CL:0000056!2.52e-13!57;CL:0000355!2.52e-13!57;CL:0000187!1.49e-12!54;CL:0000183!1.89e-12!59;CL:0000393!1.41e-11!60;CL:0000211!1.41e-11!60;CL:0000192!8.46e-11!42;CL:0000514!8.46e-11!42;CL:0000359!2.99e-07!32;CL:0000222!3.43e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000192;7.02e-08;43!CL:0000187;3.36e-07;55!CL:0000359;5.19e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.15e-13,58;CL:0000056,3.15e-13,58;CL:0000355,3.15e-13,58;CL:0000187,1.86e-12,55;CL:0000393,1.66e-11,61;CL:0000211,1.66e-11,61;CL:0000192,1.09e-10,43;CL:0000514,1.09e-10,43;CL:0000359,2.99e-07,32;CL:0000222,4.31e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;7.02e-08;43!CL:0000355;3.48e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!6.48e-15!63;UBERON:0001015!6.48e-15!63;UBERON:0000383!6.48e-15!63;UBERON:0001134!8.65e-15!61;UBERON:0002036!8.65e-15!61;UBERON:0003082!8.65e-15!61;UBERON:0004290!1.49e-14!70;UBERON:0000914!2.32e-14!83;UBERON:0002329!2.32e-14!83;UBERON:0003077!2.32e-14!83;UBERON:0003059!2.32e-14!83;UBERON:0007282!2.32e-14!83;UBERON:0009618!2.32e-14!83;UBERON:0007285!2.32e-14!83;UBERON:0005256!5.83e-14!143;UBERON:0000475!8.30e-14!365;UBERON:0000481!6.36e-13!347;UBERON:0000119!3.00e-12!312;UBERON:0000483!1.92e-11!309;UBERON:0000486!5.42e-11!82;UBERON:0000490!6.95e-11!138;UBERON:0007023!1.10e-08!115;UBERON:0000073!2.66e-08!94;UBERON:0001016!2.66e-08!94;UBERON:0003075!5.29e-08!86;UBERON:0007284!5.29e-08!86;UBERON:0005743!7.47e-08!86;UBERON:0002100!9.59e-08!216;UBERON:0001009!1.50e-07!113;UBERON:0002346!1.72e-07!90;UBERON:0004535!3.43e-07!110;UBERON:0000033!3.51e-07!123;UBERON:0000153!4.12e-07!129;UBERON:0007811!4.12e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.53e-08;31!UBERON:0001015;2.53e-08;31!UBERON:0000383;2.53e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,7.08e-15,160;UBERON:0009142,7.08e-15,160;UBERON:0002385,8.12e-15,64;UBERON:0001015,8.12e-15,64;UBERON:0000383,8.12e-15,64;UBERON:0001134,1.10e-14,62;UBERON:0002036,1.10e-14,62;UBERON:0003082,1.10e-14,62;UBERON:0003077,1.25e-14,72;UBERON:0007285,1.25e-14,72;UBERON:0002329,1.78e-14,71;UBERON:0003059,1.78e-14,71;UBERON:0007282,1.78e-14,71;UBERON:0004290,1.78e-14,71;UBERON:0009618,1.78e-14,71;UBERON:0007524,2.99e-14,73;UBERON:0005256,2.58e-13,122;UBERON:0000119,4.23e-13,309;UBERON:0007503,1.70e-12,78;UBERON:0000483,2.90e-12,306;UBERON:0000490,2.94e-11,148;UBERON:0000486,5.84e-11,83;UBERON:0003075,5.90e-09,82;UBERON:0007284,5.90e-09,82;UBERON:0010314,6.27e-09,132;UBERON:0007023,1.30e-08,114;UBERON:0002346,2.28e-08,86;UBERON:0001009,2.79e-07,112;UBERON:0001016,4.32e-07,89;UBERON:0004535,6.29e-07,109 | |||
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| ||
|short_description=p1@STRADB | |short_description=p1@STRADB | ||
}} | }} |
Latest revision as of 13:21, 19 September 2015
Short description: | p1@STRADB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STRADB_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | 0bp_to_ENST00000447698, ENST00000488196, ENST00000539670_5end |
EntrezGene: | STRADB |
HGNC: | 13205 |
UniProt: | F8WCQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.15e-13 | 58 |
myoblast | 3.15e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.15e-13 | 58 |
muscle cell | 1.86e-12 | 55 |
electrically responsive cell | 1.66e-11 | 61 |
electrically active cell | 1.66e-11 | 61 |
smooth muscle cell | 1.09e-10 | 43 |
smooth muscle myoblast | 1.09e-10 | 43 |
vascular associated smooth muscle cell | 2.99e-07 | 32 |
mesodermal cell | 4.31e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 7.08e-15 | 160 |
entire embryonic mesenchyme | 7.08e-15 | 160 |
muscle tissue | 8.12e-15 | 64 |
musculature | 8.12e-15 | 64 |
musculature of body | 8.12e-15 | 64 |
skeletal muscle tissue | 1.10e-14 | 62 |
striated muscle tissue | 1.10e-14 | 62 |
myotome | 1.10e-14 | 62 |
paraxial mesoderm | 1.25e-14 | 72 |
presumptive paraxial mesoderm | 1.25e-14 | 72 |
somite | 1.78e-14 | 71 |
presomitic mesoderm | 1.78e-14 | 71 |
presumptive segmental plate | 1.78e-14 | 71 |
dermomyotome | 1.78e-14 | 71 |
trunk paraxial mesoderm | 1.78e-14 | 71 |
dense mesenchyme tissue | 2.99e-14 | 73 |
trunk mesenchyme | 2.58e-13 | 122 |
cell layer | 4.23e-13 | 309 |
epithelial vesicle | 1.70e-12 | 78 |
epithelium | 2.90e-12 | 306 |
unilaminar epithelium | 2.94e-11 | 148 |
multilaminar epithelium | 5.84e-11 | 83 |
neural plate | 5.90e-09 | 82 |
presumptive neural plate | 5.90e-09 | 82 |
structure with developmental contribution from neural crest | 6.27e-09 | 132 |
adult organism | 1.30e-08 | 114 |
neurectoderm | 2.28e-08 | 86 |
circulatory system | 2.79e-07 | 112 |
nervous system | 4.32e-07 | 89 |
cardiovascular system | 6.29e-07 | 109 |