FFCP PHASE1:Hg19::chr6:70506863..70506908,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:70506863..70506908,- to FFCP PHASE1:Hg19::chr6:70506863..70506908,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55788 | |EntrezGene=55788 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23038 | |HGNC=23038 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003pfa.2,uc003pfb.2_5end | |||
|cluster_id=chr6:70506863..70506908,- | |||
|description=CAGE_peak_1_at_LMBRD1_5end | |||
|id=chr6:70506863..70506908,- | |||
|ontology_enrichment_celltype=CL:0000766!7.55e-08!76 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.06e-09,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.09e-44!115;UBERON:0001049!2.15e-25!57;UBERON:0005068!2.15e-25!57;UBERON:0006241!2.15e-25!57;UBERON:0007135!2.15e-25!57;UBERON:0002616!1.82e-23!59;UBERON:0003080!2.96e-20!42;UBERON:0000955!6.27e-20!69;UBERON:0006238!6.27e-20!69;UBERON:0002780!7.89e-20!41;UBERON:0001890!7.89e-20!41;UBERON:0006240!7.89e-20!41;UBERON:0005743!2.40e-18!86;UBERON:0001017!2.87e-18!82;UBERON:0002346!1.80e-16!90;UBERON:0003075!4.46e-16!86;UBERON:0007284!4.46e-16!86;UBERON:0000073!6.32e-16!94;UBERON:0001016!6.32e-16!94;UBERON:0001893!8.52e-16!34;UBERON:0002020!1.66e-15!34;UBERON:0003528!1.66e-15!34;UBERON:0002791!3.24e-15!33;UBERON:0001869!1.55e-14!32;UBERON:0000033!7.03e-13!123;UBERON:0000153!2.08e-12!129;UBERON:0007811!2.08e-12!129;UBERON:0003056!2.30e-12!61;UBERON:0002619!3.80e-12!22;UBERON:0001950!3.05e-11!20;UBERON:0000956!6.33e-11!25;UBERON:0000203!6.33e-11!25;UBERON:0000924!1.08e-09!173;UBERON:0006601!1.08e-09!173;UBERON:0004121!2.75e-09!169;UBERON:0000062!3.19e-08!511;UBERON:0000468!2.66e-07!659;UBERON:0000479!3.63e-07!787;UBERON:0000467!5.14e-07!625;UBERON:0000480!8.07e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.80e-14;41!UBERON:0001890;1.80e-14;41!UBERON:0000073;7.26e-14;53!UBERON:0002616;7.26e-14;53!UBERON:0001893;1.82e-13;34!UBERON:0003528;2.88e-13;34!UBERON:0002020;2.88e-13;34!UBERON:0002791;4.01e-13;32!UBERON:0001869;4.09e-13;32!UBERON:0002619;3.75e-12;22!UBERON:0007023;2.30e-11;114!UBERON:0001950;2.99e-11;20!UBERON:0000956;6.62e-11;25!UBERON:0000203;6.62e-11;25!UBERON:0001017;1.43e-09;75!UBERON:0000955;3.86e-09;68!UBERON:0001016;2.49e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.73e-43,114;UBERON:0001049,5.91e-25,56;UBERON:0005068,5.91e-25,56;UBERON:0006241,5.91e-25,56;UBERON:0007135,5.91e-25,56;UBERON:0000073,2.85e-23,53;UBERON:0002616,2.85e-23,53;UBERON:0002780,7.89e-20,41;UBERON:0001890,7.89e-20,41;UBERON:0003080,7.89e-20,41;UBERON:0006240,7.89e-20,41;UBERON:0000955,1.65e-19,68;UBERON:0006238,1.65e-19,68;UBERON:0001017,7.23e-18,81;UBERON:0002346,1.65e-17,86;UBERON:0003075,3.91e-17,82;UBERON:0007284,3.91e-17,82;UBERON:0001893,8.52e-16,34;UBERON:0003528,1.66e-15,34;UBERON:0002020,1.66e-15,34;UBERON:0001016,2.14e-15,89;UBERON:0002791,1.40e-14,32;UBERON:0001869,1.55e-14,32;UBERON:0010314,5.51e-13,132;UBERON:0003056,1.90e-12,61;UBERON:0002619,3.80e-12,22;UBERON:0010371,1.35e-11,104;UBERON:0001950,3.05e-11,20;UBERON:0000956,6.33e-11,25;UBERON:0000203,6.33e-11,25;UBERON:0004121,2.80e-10,171;UBERON:0000924,2.80e-10,171;UBERON:0006601,2.80e-10,171;UBERON:0000479,9.49e-10,773 | |||
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| ||
|short_description=p1@LMBRD1 | |||
}} | }} |
Latest revision as of 15:12, 19 September 2015
Short description: | p1@LMBRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMBRD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc003pfa.2, uc003pfb.2_5end |
EntrezGene: | LMBRD1 |
HGNC: | 23038 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.06e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.73e-43 | 114 |
neural tube | 5.91e-25 | 56 |
neural rod | 5.91e-25 | 56 |
future spinal cord | 5.91e-25 | 56 |
neural keel | 5.91e-25 | 56 |
regional part of nervous system | 2.85e-23 | 53 |
regional part of brain | 2.85e-23 | 53 |
regional part of forebrain | 7.89e-20 | 41 |
forebrain | 7.89e-20 | 41 |
anterior neural tube | 7.89e-20 | 41 |
future forebrain | 7.89e-20 | 41 |
brain | 1.65e-19 | 68 |
future brain | 1.65e-19 | 68 |
central nervous system | 7.23e-18 | 81 |
neurectoderm | 1.65e-17 | 86 |
neural plate | 3.91e-17 | 82 |
presumptive neural plate | 3.91e-17 | 82 |
telencephalon | 8.52e-16 | 34 |
brain grey matter | 1.66e-15 | 34 |
gray matter | 1.66e-15 | 34 |
nervous system | 2.14e-15 | 89 |
regional part of telencephalon | 1.40e-14 | 32 |
cerebral hemisphere | 1.55e-14 | 32 |
structure with developmental contribution from neural crest | 5.51e-13 | 132 |
pre-chordal neural plate | 1.90e-12 | 61 |
regional part of cerebral cortex | 3.80e-12 | 22 |
ecto-epithelium | 1.35e-11 | 104 |
neocortex | 3.05e-11 | 20 |
cerebral cortex | 6.33e-11 | 25 |
pallium | 6.33e-11 | 25 |
ectoderm-derived structure | 2.80e-10 | 171 |
ectoderm | 2.80e-10 | 171 |
presumptive ectoderm | 2.80e-10 | 171 |
tissue | 9.49e-10 | 773 |