FFCP PHASE1:Hg19::chr2:20425208..20425273,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:20425208..20425273,- to FFCP PHASE1:Hg19::chr2:20425208..20425273,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6382 | |EntrezGene=6382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |HGNC=10658 | ||
|TSSclassifier=strong | |||
|UniProt=P18827 | |UniProt=P18827 | ||
|association_with_transcript=-14bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |||
|cluster_id=chr2:20425208..20425273,- | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_5_at_SDC1_5end | |||
|id=chr2:20425208..20425273,- | |||
|ontology_enrichment_celltype=CL:0000066!2.83e-36!254;CL:0000223!8.08e-18!59;CL:0002076!8.17e-17!43;CL:0002321!2.60e-10!248;CL:0000220!3.55e-10!246;CL:0002368!4.43e-08!13;CL:0002251!2.21e-07!21;CL:0002159!6.53e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.13e-14;42!CL:0002368;2.45e-09;13!CL:0002251;4.76e-08;20!CL:0002159;5.96e-08;14!CL:0002202;5.71e-07;9!CL:0002632;5.71e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.68e-34,253;CL:0002076,5.90e-19,42;CL:0000223,8.58e-19,58;CL:0002368,3.41e-09,13;CL:0002159,5.37e-08,14;CL:0002251,6.10e-08,20;CL:0002321,2.10e-07,250;CL:0002202,8.38e-07,9;CL:0002632,8.38e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;1.09e-10;58!UBERON:0008947;2.60e-08;29 | |||
|ontology_enrichment_disease=DOID:305!1.78e-18!106;DOID:0050687!3.94e-16!143;DOID:299!5.35e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.91e-07;25!DOID:1749;5.22e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.83e-16,106;DOID:0050687,3.13e-14,143;DOID:299,2.74e-07,25;DOID:1749,3.21e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.00e-29!169;UBERON:0000925!9.00e-29!169;UBERON:0006595!9.00e-29!169;UBERON:0001007!1.07e-22!155;UBERON:0001555!1.07e-22!155;UBERON:0007026!1.07e-22!155;UBERON:0004921!3.82e-20!129;UBERON:0004185!3.82e-20!129;UBERON:0000077!8.03e-20!130;UBERON:0000481!7.15e-18!347;UBERON:0000475!1.98e-17!365;UBERON:0000466!4.18e-17!126;UBERON:0003104!6.81e-17!238;UBERON:0009142!6.81e-17!238;UBERON:0001041!1.01e-15!98;UBERON:0001004!4.17e-15!72;UBERON:0000464!4.58e-15!104;UBERON:0005177!1.67e-14!107;UBERON:0000062!2.13e-13!511;UBERON:0000064!2.93e-13!219;UBERON:0009569!4.69e-13!113;UBERON:0000065!1.18e-12!53;UBERON:0005911!4.60e-12!82;UBERON:0000468!6.71e-12!659;UBERON:0002100!7.39e-12!216;UBERON:0000480!2.71e-11!626;UBERON:0008947!3.58e-11!38;UBERON:0003258!3.58e-11!38;UBERON:0000467!4.50e-11!625;UBERON:0001048!1.59e-10!168;UBERON:0005178!2.01e-10!34;UBERON:0002224!2.01e-10!34;UBERON:0001008!5.85e-10!45;UBERON:0006554!7.54e-10!44;UBERON:0000072!9.75e-10!46;UBERON:0005181!1.27e-09!35;UBERON:0000922!1.39e-09!612;UBERON:0005153!2.62e-09!37;UBERON:0002050!8.52e-09!605;UBERON:0005423!8.52e-09!605;UBERON:0000923!1.01e-08!604;UBERON:0005291!1.01e-08!604;UBERON:0006598!1.01e-08!604;UBERON:0002532!1.01e-08!604;UBERON:0000063!2.79e-08!97;UBERON:0005172!5.20e-08!55;UBERON:0005173!5.20e-08!55;UBERON:0000058!8.75e-08!26;UBERON:0003064!1.30e-07!37;UBERON:0005157!2.17e-07!51;UBERON:0005631!2.68e-07!14;UBERON:0000158!2.68e-07!14;UBERON:0003100!3.28e-07!41;UBERON:0000915!5.00e-07!52;UBERON:0000119!5.10e-07!312;UBERON:0002417!5.69e-07!61;UBERON:0000916!5.69e-07!61;UBERON:0005156!7.65e-07!59;UBERON:0000990!7.65e-07!59;UBERON:0002553!8.11e-07!70;UBERON:0002048!8.57e-07!22;UBERON:0000117!8.57e-07!22;UBERON:0000171!8.57e-07!22;UBERON:0000170!8.57e-07!22;UBERON:0005597!8.57e-07!22;UBERON:0000118!8.57e-07!22;UBERON:0000483!9.65e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;2.36e-10;44!UBERON:0005178;8.80e-10;34!UBERON:0002224;8.80e-10;34!UBERON:0001004;2.20e-09;65!UBERON:0005181;2.86e-09;35!UBERON:0000072;5.02e-09;37!UBERON:0004921;4.76e-08;33!UBERON:0006554;6.40e-08;30!UBERON:0001008;6.40e-08;30!UBERON:0004807;6.92e-08;22!UBERON:0002048;2.14e-07;22!UBERON:0000117;2.14e-07;22!UBERON:0000171;2.14e-07;22!UBERON:0000170;2.14e-07;22!UBERON:0005911;2.75e-07;36!UBERON:0007196;7.11e-07;15!UBERON:0001558;7.11e-07;15 | |||
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| ||
|short_description=p5@SDC1 | |||
}} | }} |
Latest revision as of 15:43, 19 September 2015
Short description: | p5@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SDC1_5end |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | -14bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.68e-34 | 253 |
endo-epithelial cell | 5.90e-19 | 42 |
endodermal cell | 8.58e-19 | 58 |
respiratory epithelial cell | 3.41e-09 | 13 |
general ecto-epithelial cell | 5.37e-08 | 14 |
epithelial cell of alimentary canal | 6.10e-08 | 20 |
embryonic cell | 2.10e-07 | 250 |
epithelial cell of tracheobronchial tree | 8.38e-07 | 9 |
epithelial cell of lower respiratory tract | 8.38e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.19e-27 | 160 |
endoderm | 1.19e-27 | 160 |
presumptive endoderm | 1.19e-27 | 160 |
digestive system | 1.20e-21 | 145 |
digestive tract | 1.20e-21 | 145 |
primitive gut | 1.20e-21 | 145 |
subdivision of digestive tract | 2.39e-20 | 118 |
foregut | 2.15e-16 | 87 |
respiratory system | 4.33e-16 | 74 |
trunk region element | 1.99e-14 | 101 |
respiratory tract | 3.88e-13 | 54 |
respiratory primordium | 2.34e-12 | 38 |
endoderm of foregut | 2.34e-12 | 38 |
endo-epithelium | 1.52e-11 | 82 |
subdivision of trunk | 2.19e-11 | 112 |
thoracic cavity element | 8.36e-11 | 34 |
thoracic cavity | 8.36e-11 | 34 |
renal system | 1.08e-10 | 48 |
urinary system structure | 1.47e-10 | 47 |
thoracic segment organ | 3.75e-10 | 35 |
segment of respiratory tract | 7.39e-10 | 47 |
primordium | 2.27e-09 | 160 |
epithelial bud | 3.13e-09 | 37 |
trunk | 5.54e-09 | 199 |
extraembryonic membrane | 2.79e-08 | 14 |
membranous layer | 2.79e-08 | 14 |
epithelial fold | 2.38e-07 | 47 |
thoracic segment of trunk | 2.77e-07 | 52 |
lung | 2.96e-07 | 22 |
respiratory tube | 2.96e-07 | 22 |
respiration organ | 2.96e-07 | 22 |
pair of lungs | 2.96e-07 | 22 |
lung primordium | 2.96e-07 | 22 |
lung bud | 2.96e-07 | 22 |
surface structure | 4.59e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.83e-16 | 106 |
cell type cancer | 3.13e-14 | 143 |
adenocarcinoma | 2.74e-07 | 25 |
squamous cell carcinoma | 3.21e-07 | 14 |