FFCP PHASE1:Hg19::chr8:9911779..9911871,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:9911779..9911871,+ to FFCP PHASE1:Hg19::chr8:9911779..9911871,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4482 | |EntrezGene=4482 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7377 | |HGNC=7377 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJ68 | |UniProt=Q9UJ68 | ||
|association_with_transcript=0bp_to_NM_001135670,NM_012331,uc003wsx.2,uc011kwx.1_5end | |||
|cluster_id=chr8:9911779..9911871,+ | |||
|description=CAGE_peak_1_at_MSRA_5end | |||
|id=chr8:9911779..9911871,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.06e-28!76;CL:0000557!7.58e-26!71;CL:0002009!2.85e-22!65;CL:0000839!6.92e-22!70;CL:0002194!3.21e-21!63;CL:0000576!3.21e-21!63;CL:0000040!3.21e-21!63;CL:0000559!3.21e-21!63;CL:0002057!2.65e-19!42;CL:0000860!1.36e-17!45;CL:0000763!1.92e-17!112;CL:0000049!1.92e-17!112;CL:0000115!2.55e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.41e-14;39!CL:0000234;3.41e-14;39!CL:0000766;7.68e-14;69!CL:0000860;2.01e-13;33!CL:0002057;2.01e-13;33!CL:0000576;3.51e-13;48!CL:0000763;6.53e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.13e-30,72;CL:0000557,1.77e-28,67;CL:0002009,8.70e-25,61;CL:0000839,3.20e-24,66;CL:0002194,1.06e-23,59;CL:0000576,1.06e-23,59;CL:0000040,1.06e-23,59;CL:0000559,1.06e-23,59;CL:0000473,9.01e-23,48;CL:0000234,9.01e-23,48;CL:0000860,2.65e-19,42;CL:0002057,2.65e-19,42;CL:0000763,8.48e-19,108;CL:0000049,8.48e-19,108;CL:0000115,2.26e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002057;3.29e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.13e-28!216;UBERON:0002371!9.21e-23!80;UBERON:0001474!7.22e-22!86;UBERON:0002193!1.28e-19!112;UBERON:0002390!4.68e-19!102;UBERON:0003061!4.68e-19!102;UBERON:0004765!8.44e-19!101;UBERON:0001434!8.44e-19!101;UBERON:0002405!3.55e-18!115;UBERON:0002204!7.16e-16!167;UBERON:0000926!2.11e-15!448;UBERON:0004120!2.11e-15!448;UBERON:0006603!2.11e-15!448;UBERON:0000467!5.11e-12!625;UBERON:0000480!1.12e-11!626;UBERON:0000923!3.66e-09!604;UBERON:0005291!3.66e-09!604;UBERON:0006598!3.66e-09!604;UBERON:0002532!3.66e-09!604;UBERON:0002050!3.83e-09!605;UBERON:0005423!3.83e-09!605;UBERON:0000468!2.26e-08!659;UBERON:0000922!6.33e-08!612;UBERON:0000062!2.28e-07!511;UBERON:0004872!2.30e-07!84;UBERON:0001009!9.69e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,1.83e-30,203;UBERON:0002371,6.16e-25,76;UBERON:0001474,7.27e-24,82;UBERON:0002405,4.28e-22,93;UBERON:0002193,4.07e-21,108;UBERON:0004765,1.05e-20,90;UBERON:0002390,1.25e-20,98;UBERON:0003061,1.25e-20,98;UBERON:0001434,5.23e-19,100;UBERON:0000926,7.30e-18,315;UBERON:0004120,7.30e-18,315;UBERON:0006603,7.30e-18,315;UBERON:0002204,1.64e-15,167;UBERON:0005423,7.15e-10,581;UBERON:0002050,7.17e-10,564;UBERON:0000923,1.20e-09,560;UBERON:0010316,1.20e-09,560;UBERON:0005291,1.20e-09,560;UBERON:0006598,1.20e-09,560;UBERON:0010317,1.20e-09,560;UBERON:0002532,1.20e-09,560;UBERON:0000922,2.10e-08,592;UBERON:0004872,9.57e-08,83;UBERON:0007500,3.85e-07,59;UBERON:0001981,3.85e-07,59;UBERON:0004537,3.85e-07,59;UBERON:0006965,3.85e-07,59;UBERON:0001009,4.82e-07,112;UBERON:0000055,5.98e-07,68 | |||
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| ||
|short_description=p1@MSRA | |||
}} | }} |
Latest revision as of 16:38, 19 September 2015
Short description: | p1@MSRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MSRA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_001135670, NM_012331, uc003wsx.2, uc011kwx.1_5end |
EntrezGene: | MSRA |
HGNC: | 7377 |
UniProt: | Q9UJ68 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.13e-30 | 72 |
granulocyte monocyte progenitor cell | 1.77e-28 | 67 |
macrophage dendritic cell progenitor | 8.70e-25 | 61 |
myeloid lineage restricted progenitor cell | 3.20e-24 | 66 |
monopoietic cell | 1.06e-23 | 59 |
monocyte | 1.06e-23 | 59 |
monoblast | 1.06e-23 | 59 |
promonocyte | 1.06e-23 | 59 |
defensive cell | 9.01e-23 | 48 |
phagocyte | 9.01e-23 | 48 |
classical monocyte | 2.65e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.65e-19 | 42 |
myeloid cell | 8.48e-19 | 108 |
common myeloid progenitor | 8.48e-19 | 108 |
endothelial cell | 2.26e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 1.83e-30 | 203 |
bone marrow | 6.16e-25 | 76 |
bone element | 7.27e-24 | 82 |
immune system | 4.28e-22 | 93 |
hemolymphoid system | 4.07e-21 | 108 |
skeletal element | 1.05e-20 | 90 |
hematopoietic system | 1.25e-20 | 98 |
blood island | 1.25e-20 | 98 |
skeletal system | 5.23e-19 | 100 |
mesoderm | 7.30e-18 | 315 |
mesoderm-derived structure | 7.30e-18 | 315 |
presumptive mesoderm | 7.30e-18 | 315 |
musculoskeletal system | 1.64e-15 | 167 |
developing anatomical structure | 7.15e-10 | 581 |
embryonic structure | 7.17e-10 | 564 |
germ layer | 1.20e-09 | 560 |
germ layer / neural crest | 1.20e-09 | 560 |
embryonic tissue | 1.20e-09 | 560 |
presumptive structure | 1.20e-09 | 560 |
germ layer / neural crest derived structure | 1.20e-09 | 560 |
epiblast (generic) | 1.20e-09 | 560 |
embryo | 2.10e-08 | 592 |
splanchnic layer of lateral plate mesoderm | 9.57e-08 | 83 |
epithelial tube open at both ends | 3.85e-07 | 59 |
blood vessel | 3.85e-07 | 59 |
blood vasculature | 3.85e-07 | 59 |
vascular cord | 3.85e-07 | 59 |
circulatory system | 4.82e-07 | 112 |
vessel | 5.98e-07 | 68 |