FFCP PHASE1:Hg19::chr15:90809210..90809234,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51335 | |EntrezGene=51335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18077 | |HGNC=18077 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=315bp_to_NR_028052,uc002bpg.1_5end | |association_with_transcript=315bp_to_NR_028052,uc002bpg.1_5end | ||
|cluster_id=chr15:90809210..90809234,+ | |||
|description=CAGE_peak_3_at_NGRN_5end | |description=CAGE_peak_3_at_NGRN_5end | ||
|id=chr15:90809210..90809234,+ | |id=chr15:90809210..90809234,+ | ||
|ontology_enrichment_celltype=CL:0000076!7.51e-07!62 | |ontology_enrichment_celltype=CL:0000076!7.51e-07!62 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000076,5.17e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.79e-13!57;UBERON:0005068!1.79e-13!57;UBERON:0006241!1.79e-13!57;UBERON:0007135!1.79e-13!57;UBERON:0003080!4.29e-13!42;UBERON:0002780!5.05e-13!41;UBERON:0001890!5.05e-13!41;UBERON:0006240!5.05e-13!41;UBERON:0002616!3.24e-11!59;UBERON:0000025!3.83e-11!194;UBERON:0001893!4.33e-11!34;UBERON:0002020!4.37e-11!34;UBERON:0003528!4.37e-11!34;UBERON:0001869!4.70e-11!32;UBERON:0002791!1.50e-10!33;UBERON:0004111!1.98e-10!241;UBERON:0001017!4.98e-10!82;UBERON:0005743!6.80e-10!86;UBERON:0000955!1.37e-09!69;UBERON:0006238!1.37e-09!69;UBERON:0003075!3.00e-09!86;UBERON:0007284!3.00e-09!86;UBERON:0001950!3.93e-09!20;UBERON:0002619!4.03e-09!22;UBERON:0002346!6.18e-09!90;UBERON:0000477!1.16e-08!286;UBERON:0000073!1.82e-08!94;UBERON:0001016!1.82e-08!94;UBERON:0000483!2.11e-08!309;UBERON:0000956!2.43e-08!25;UBERON:0000203!2.43e-08!25;UBERON:0003056!2.66e-08!61;UBERON:0000119!3.08e-08!312;UBERON:0007023!2.40e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.84e-10;32!UBERON:0001950;4.52e-10;20!UBERON:0002619;8.81e-10;22!UBERON:0001893;9.53e-10;34!UBERON:0002791;9.69e-10;32!UBERON:0002780;1.29e-09;41!UBERON:0001890;1.29e-09;41!UBERON:0003528;2.11e-09;34!UBERON:0002020;2.11e-09;34!UBERON:0000956;3.18e-08;25!UBERON:0000203;3.18e-08;25!UBERON:0000073;5.42e-08;53!UBERON:0002616;5.42e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.39e-14,56;UBERON:0005068,9.39e-14,56;UBERON:0006241,9.39e-14,56;UBERON:0007135,9.39e-14,56;UBERON:0002780,1.58e-13,41;UBERON:0001890,1.58e-13,41;UBERON:0003080,1.58e-13,41;UBERON:0006240,1.58e-13,41;UBERON:0000073,2.47e-13,53;UBERON:0002616,2.47e-13,53;UBERON:0001893,2.36e-11,34;UBERON:0003528,2.38e-11,34;UBERON:0002020,2.38e-11,34;UBERON:0001869,2.75e-11,32;UBERON:0002791,6.45e-11,32;UBERON:0001017,8.22e-11,81;UBERON:0010371,1.92e-10,104;UBERON:0000025,2.13e-10,192;UBERON:0004111,6.46e-10,240;UBERON:0001950,8.25e-10,20;UBERON:0000955,1.00e-09,68;UBERON:0006238,1.00e-09,68;UBERON:0002619,1.64e-09,22;UBERON:0001016,4.33e-09,89;UBERON:0003075,5.84e-09,82;UBERON:0007284,5.84e-09,82;UBERON:0002346,1.43e-08,86;UBERON:0000956,2.79e-08,25;UBERON:0000203,2.79e-08,25;UBERON:0003056,4.50e-08,61;UBERON:0007023,5.90e-08,114;UBERON:0001637,7.01e-07,42;UBERON:0003509,7.01e-07,42;UBERON:0004572,7.01e-07,42 | |||
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| ||
|short_description=p3@NGRN | |short_description=p3@NGRN | ||
}} | }} |
Latest revision as of 19:33, 19 September 2015
Short description: | p3@NGRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NGRN_5end |
Coexpression cluster: | NA |
Association with transcript: | 315bp_to_NR_028052, uc002bpg.1_5end |
EntrezGene: | NGRN |
HGNC: | 18077 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
squamous epithelial cell | 5.17e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
neural tube | 9.39e-14 | 56 |
neural rod | 9.39e-14 | 56 |
future spinal cord | 9.39e-14 | 56 |
neural keel | 9.39e-14 | 56 |
regional part of forebrain | 1.58e-13 | 41 |
forebrain | 1.58e-13 | 41 |
anterior neural tube | 1.58e-13 | 41 |
future forebrain | 1.58e-13 | 41 |
regional part of nervous system | 2.47e-13 | 53 |
regional part of brain | 2.47e-13 | 53 |
telencephalon | 2.36e-11 | 34 |
brain grey matter | 2.38e-11 | 34 |
gray matter | 2.38e-11 | 34 |
cerebral hemisphere | 2.75e-11 | 32 |
regional part of telencephalon | 6.45e-11 | 32 |
central nervous system | 8.22e-11 | 81 |
ecto-epithelium | 1.92e-10 | 104 |
tube | 2.13e-10 | 192 |
anatomical conduit | 6.46e-10 | 240 |
neocortex | 8.25e-10 | 20 |
brain | 1.00e-09 | 68 |
future brain | 1.00e-09 | 68 |
regional part of cerebral cortex | 1.64e-09 | 22 |
nervous system | 4.33e-09 | 89 |
neural plate | 5.84e-09 | 82 |
presumptive neural plate | 5.84e-09 | 82 |
neurectoderm | 1.43e-08 | 86 |
cerebral cortex | 2.79e-08 | 25 |
pallium | 2.79e-08 | 25 |
pre-chordal neural plate | 4.50e-08 | 61 |
adult organism | 5.90e-08 | 114 |
artery | 7.01e-07 | 42 |
arterial blood vessel | 7.01e-07 | 42 |
arterial system | 7.01e-07 | 42 |