FFCP PHASE1:Hg19::chr6:125283566..125283604,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:125283566..125283604,+
|short_description=p3@RNF217
|description=CAGE_peak_3_at_RNF217_5end
|association_with_transcript=-86bp_to_ENST00000521654_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=154214 | |EntrezGene=154214 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21487 | |HGNC=21487 | ||
|TSSclassifier=strong | |||
|UniProt=F2Z2M4 | |UniProt=F2Z2M4 | ||
|association_with_transcript=-86bp_to_ENST00000521654_5end | |||
|cluster_id=chr6:125283566..125283604,+ | |||
|description=CAGE_peak_3_at_RNF217_5end | |||
|id=chr6:125283566..125283604,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.49e-22!65;CL:0002194!2.35e-22!63;CL:0000576!2.35e-22!63;CL:0000040!2.35e-22!63;CL:0000559!2.35e-22!63;CL:0002057!7.67e-20!42;CL:0000557!5.42e-19!71;CL:0000860!1.97e-18!45;CL:0000839!1.56e-17!70;CL:0000766!4.13e-15!76;CL:0000763!7.18e-09!112;CL:0000049!7.18e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000576;1.02e-16;48!CL:0000860;1.50e-16;33!CL:0002057;1.50e-16;33!CL:0000473;1.19e-15;39!CL:0000234;1.19e-15;39!CL:0000766;7.27e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,4.31e-29,61;CL:0002194,6.68e-29,59;CL:0000576,6.68e-29,59;CL:0000040,6.68e-29,59;CL:0000559,6.68e-29,59;CL:0000473,1.43e-25,48;CL:0000234,1.43e-25,48;CL:0000557,1.62e-25,67;CL:0000860,1.34e-23,42;CL:0002057,1.34e-23,42;CL:0000839,5.61e-23,66;CL:0000766,2.25e-21,72;CL:0000763,2.37e-13,108;CL:0000049,2.37e-13,108 | |||
|ontology_enrichment_development_v019=CL:0002057;3.65e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.09e-17!659;UBERON:0002371!4.05e-17!80;UBERON:0000467!9.26e-17!625;UBERON:0000480!2.05e-16!626;UBERON:0001474!1.04e-15!86;UBERON:0000923!1.12e-14!604;UBERON:0005291!1.12e-14!604;UBERON:0006598!1.12e-14!604;UBERON:0002532!1.12e-14!604;UBERON:0002050!1.63e-14!605;UBERON:0005423!1.63e-14!605;UBERON:0000922!5.89e-14!612;UBERON:0004765!6.79e-14!101;UBERON:0001434!6.79e-14!101;UBERON:0000062!1.07e-13!511;UBERON:0002390!8.67e-13!102;UBERON:0003061!8.67e-13!102;UBERON:0002405!1.01e-12!115;UBERON:0007023!1.84e-12!115;UBERON:0002193!3.41e-12!112;UBERON:0003081!1.71e-11!216;UBERON:0000926!1.92e-07!448;UBERON:0004120!1.92e-07!448;UBERON:0006603!1.92e-07!448;UBERON:0002204!6.45e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.08e-23,76;UBERON:0001474,7.97e-20,82;UBERON:0002405,3.67e-18,93;UBERON:0002390,5.47e-17,98;UBERON:0003061,5.47e-17,98;UBERON:0004765,5.92e-17,90;UBERON:0001434,1.36e-15,100;UBERON:0002193,1.79e-15,108;UBERON:0003081,5.01e-14,203;UBERON:0007023,1.29e-11,114;UBERON:0000923,2.54e-11,560;UBERON:0010316,2.54e-11,560;UBERON:0005291,2.54e-11,560;UBERON:0006598,2.54e-11,560;UBERON:0010317,2.54e-11,560;UBERON:0002532,2.54e-11,560;UBERON:0002050,5.87e-11,564;UBERON:0000922,1.08e-09,592;UBERON:0005423,1.60e-09,581;UBERON:0000926,2.96e-08,315;UBERON:0004120,2.96e-08,315;UBERON:0006603,2.96e-08,315;UBERON:0002204,9.52e-08,167 | |||
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| ||
|short_description=p3@RNF217 | |||
}} | }} |
Latest revision as of 06:54, 20 September 2015
Short description: | p3@RNF217 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RNF217_5end |
Coexpression cluster: | NA |
Association with transcript: | -86bp_to_ENST00000521654_5end |
EntrezGene: | RNF217 |
HGNC: | 21487 |
UniProt: | F2Z2M4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 4.31e-29 | 61 |
monopoietic cell | 6.68e-29 | 59 |
monocyte | 6.68e-29 | 59 |
monoblast | 6.68e-29 | 59 |
promonocyte | 6.68e-29 | 59 |
defensive cell | 1.43e-25 | 48 |
phagocyte | 1.43e-25 | 48 |
granulocyte monocyte progenitor cell | 1.62e-25 | 67 |
classical monocyte | 1.34e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.34e-23 | 42 |
myeloid lineage restricted progenitor cell | 5.61e-23 | 66 |
myeloid leukocyte | 2.25e-21 | 72 |
myeloid cell | 2.37e-13 | 108 |
common myeloid progenitor | 2.37e-13 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.08e-23 | 76 |
bone element | 7.97e-20 | 82 |
immune system | 3.67e-18 | 93 |
hematopoietic system | 5.47e-17 | 98 |
blood island | 5.47e-17 | 98 |
skeletal element | 5.92e-17 | 90 |
skeletal system | 1.36e-15 | 100 |
hemolymphoid system | 1.79e-15 | 108 |
lateral plate mesoderm | 5.01e-14 | 203 |
adult organism | 1.29e-11 | 114 |
germ layer | 2.54e-11 | 560 |
germ layer / neural crest | 2.54e-11 | 560 |
embryonic tissue | 2.54e-11 | 560 |
presumptive structure | 2.54e-11 | 560 |
germ layer / neural crest derived structure | 2.54e-11 | 560 |
epiblast (generic) | 2.54e-11 | 560 |
embryonic structure | 5.87e-11 | 564 |
embryo | 1.08e-09 | 592 |
developing anatomical structure | 1.60e-09 | 581 |
mesoderm | 2.96e-08 | 315 |
mesoderm-derived structure | 2.96e-08 | 315 |
presumptive mesoderm | 2.96e-08 | 315 |
musculoskeletal system | 9.52e-08 | 167 |