FFCP PHASE1:Hg19::chr6:125540901..125540910,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7164 | |EntrezGene=7164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12006 | |HGNC=12006 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-80bp_to_ENST00000524679_5end | |association_with_transcript=-80bp_to_ENST00000524679_5end | ||
|cluster_id=chr6:125540901..125540910,+ | |||
|coexpression_cluster_id=C4554 | |||
|description=CAGE_peak_15_at_TPD52L1_5end | |description=CAGE_peak_15_at_TPD52L1_5end | ||
|id=chr6:125540901..125540910,+ | |id=chr6:125540901..125540910,+ | ||
|ontology_enrichment_celltype=CL:0000064!2.49e-10!3;CL:0005012!2.49e-10!3;CL:0000067!2.49e-10!3;CL:0002304!2.49e-10!3;CL:0000313!1.84e-08!1;CL:0002563!2.06e-08!4 | |ontology_enrichment_celltype=CL:0000064!2.49e-10!3;CL:0005012!2.49e-10!3;CL:0000067!2.49e-10!3;CL:0002304!2.49e-10!3;CL:0000313!1.84e-08!1;CL:0002563!2.06e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0002563;6.02e-29;4!CL:0002253;2.05e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,5.61e-29,4;CL:0002253,2.05e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.64e-29;1!UBERON:0003056;1.14e-10;3!UBERON:0003104;3.01e-09;31 | |||
|ontology_enrichment_disease=DOID:178!1.02e-08!1;DOID:326!1.02e-08!1;DOID:3978!1.02e-08!1;DOID:3394!1.02e-08!1;DOID:5844!1.02e-08!1;DOID:2152!1.84e-08!1;DOID:5409!3.41e-08!4 | |ontology_enrichment_disease=DOID:178!1.02e-08!1;DOID:326!1.02e-08!1;DOID:3978!1.02e-08!1;DOID:3394!1.02e-08!1;DOID:5844!1.02e-08!1;DOID:2152!1.84e-08!1;DOID:5409!3.41e-08!4 | ||
|ontology_enrichment_disease_v019=DOID:3119;6.09e-19;14!DOID:5409;1.82e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,6.09e-19,14;DOID:5409,1.82e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0005162!3.22e-15!2;UBERON:0000122!3.22e-15!2;UBERON:0002104!9.74e-12!21;UBERON:0007625!1.81e-10!11;UBERON:0001778!2.49e-10!3;UBERON:0001775!2.49e-10!3;UBERON:0001032!3.30e-10!24;UBERON:0004456!3.30e-10!24;UBERON:0001896!4.60e-10!3;UBERON:0005290!4.60e-10!3;UBERON:0010096!4.60e-10!3;UBERON:0000941!8.78e-09!1;UBERON:0004904!8.78e-09!1;UBERON:0002464!8.78e-09!1;UBERON:0001021!8.78e-09!1;UBERON:0001785!8.78e-09!1;UBERON:0000970!1.09e-08!20;UBERON:0001052!1.71e-08!4;UBERON:0004911!1.84e-08!1;UBERON:0001242!2.06e-08!4;UBERON:0001262!2.06e-08!4;UBERON:0004786!2.06e-08!4;UBERON:0004808!2.06e-08!4;UBERON:0001277!2.06e-08!4;UBERON:0002336!3.79e-08!1;UBERON:0001018!3.79e-08!1;UBERON:0002473!3.79e-08!1;UBERON:0005340!3.79e-08!1;UBERON:0002316!3.79e-08!1;UBERON:0003544!3.79e-08!1;UBERON:0001020!3.79e-08!1;UBERON:0005970!3.79e-08!1;UBERON:0002437!3.79e-08!1;UBERON:0000488!5.82e-08!4;UBERON:0000020!1.58e-07!23;UBERON:0000063!5.34e-07!97;UBERON:0004907!5.94e-07!5;UBERON:0003350!6.87e-07!5 | |ontology_enrichment_uberon=UBERON:0005162!3.22e-15!2;UBERON:0000122!3.22e-15!2;UBERON:0002104!9.74e-12!21;UBERON:0007625!1.81e-10!11;UBERON:0001778!2.49e-10!3;UBERON:0001775!2.49e-10!3;UBERON:0001032!3.30e-10!24;UBERON:0004456!3.30e-10!24;UBERON:0001896!4.60e-10!3;UBERON:0005290!4.60e-10!3;UBERON:0010096!4.60e-10!3;UBERON:0000941!8.78e-09!1;UBERON:0004904!8.78e-09!1;UBERON:0002464!8.78e-09!1;UBERON:0001021!8.78e-09!1;UBERON:0001785!8.78e-09!1;UBERON:0000970!1.09e-08!20;UBERON:0001052!1.71e-08!4;UBERON:0004911!1.84e-08!1;UBERON:0001242!2.06e-08!4;UBERON:0001262!2.06e-08!4;UBERON:0004786!2.06e-08!4;UBERON:0004808!2.06e-08!4;UBERON:0001277!2.06e-08!4;UBERON:0002336!3.79e-08!1;UBERON:0001018!3.79e-08!1;UBERON:0002473!3.79e-08!1;UBERON:0005340!3.79e-08!1;UBERON:0002316!3.79e-08!1;UBERON:0003544!3.79e-08!1;UBERON:0001020!3.79e-08!1;UBERON:0005970!3.79e-08!1;UBERON:0002437!3.79e-08!1;UBERON:0000488!5.82e-08!4;UBERON:0000020!1.58e-07!23;UBERON:0000063!5.34e-07!97;UBERON:0004907!5.94e-07!5;UBERON:0003350!6.87e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001052;2.74e-29;4!UBERON:0000941;3.64e-29;1!UBERON:0001785;3.64e-29;1!UBERON:0002464;3.64e-29;1!UBERON:0004904;3.64e-29;1!UBERON:0001021;3.64e-29;1!UBERON:0001242;6.02e-29;4!UBERON:0001262;6.02e-29;4!UBERON:0004786;6.02e-29;4!UBERON:0004808;6.02e-29;4!UBERON:0001277;6.02e-29;4!UBERON:0004907;1.14e-23;5!UBERON:0005409;3.84e-20;22!UBERON:0000485;4.93e-17;7!UBERON:0003929;4.93e-17;7!UBERON:0003714;2.55e-15;2!UBERON:0005162;2.55e-15;2!UBERON:0000122;2.55e-15;2!UBERON:0003350;4.86e-15;8!UBERON:0000160;7.35e-15;17!UBERON:0004921;2.19e-12;33!UBERON:0000059;2.42e-11;11!UBERON:0005911;2.18e-07;36!UBERON:0000945;5.70e-07;5!UBERON:0010039;5.70e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,2.74e-29,4;UBERON:0000941,4.20e-29,1;UBERON:0001785,4.20e-29,1;UBERON:0002464,4.20e-29,1;UBERON:0004904,4.20e-29,1;UBERON:0001021,4.20e-29,1;UBERON:0003902,4.20e-29,1;UBERON:0005425,4.20e-29,1;UBERON:0001242,5.61e-29,4;UBERON:0001262,5.61e-29,4;UBERON:0004786,5.61e-29,4;UBERON:0004808,5.61e-29,4;UBERON:0001277,5.61e-29,4;UBERON:0004907,1.14e-23,5;UBERON:0005409,6.73e-18,25;UBERON:0003714,2.74e-15,2;UBERON:0005162,2.74e-15,2;UBERON:0000122,2.74e-15,2;UBERON:0003350,4.69e-15,8;UBERON:0000160,7.17e-15,17;UBERON:0000485,1.69e-13,9;UBERON:0000059,2.42e-11,11;UBERON:0004921,8.24e-09,118;UBERON:0001781,2.61e-08,4;UBERON:0001007,3.33e-07,145;UBERON:0001555,3.33e-07,145;UBERON:0007026,3.33e-07,145;UBERON:0001046,5.84e-07,19 | |||
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|short_description=p15@TPD52L1 | |short_description=p15@TPD52L1 | ||
}} | }} |
Latest revision as of 07:25, 20 September 2015
Short description: | p15@TPD52L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_TPD52L1_5end |
Coexpression cluster: | C4554_rectal_small_gastric_hepatoblastoma_Intestinal_mesothelioma_colon |
Association with transcript: | -80bp_to_ENST00000524679_5end |
EntrezGene: | TPD52L1 |
HGNC: | 12006 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 5.61e-29 | 4 |
epithelial cell of large intestine | 2.05e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
rectum | 2.74e-29 | 4 |
cranial nerve II | 4.20e-29 | 1 |
cranial nerve | 4.20e-29 | 1 |
nerve trunk | 4.20e-29 | 1 |
nerve connecting eye with brain | 4.20e-29 | 1 |
nerve | 4.20e-29 | 1 |
retinal neural layer | 4.20e-29 | 1 |
presumptive neural retina | 4.20e-29 | 1 |
intestinal mucosa | 5.61e-29 | 4 |
wall of intestine | 5.61e-29 | 4 |
gastrointestinal system mucosa | 5.61e-29 | 4 |
gastrointestinal system epithelium | 5.61e-29 | 4 |
intestinal epithelium | 5.61e-29 | 4 |
lower digestive tract | 1.14e-23 | 5 |
gastrointestinal system | 6.73e-18 | 25 |
neural tissue | 2.74e-15 | 2 |
multi cell component structure | 2.74e-15 | 2 |
neuron projection bundle | 2.74e-15 | 2 |
epithelium of mucosa | 4.69e-15 | 8 |
intestine | 7.17e-15 | 17 |
simple columnar epithelium | 1.69e-13 | 9 |
large intestine | 2.42e-11 | 11 |
subdivision of digestive tract | 8.24e-09 | 118 |
layer of retina | 2.61e-08 | 4 |
digestive system | 3.33e-07 | 145 |
digestive tract | 3.33e-07 | 145 |
primitive gut | 3.33e-07 | 145 |
hindgut | 5.84e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 6.09e-19 | 14 |
lung small cell carcinoma | 1.82e-08 | 4 |