FFCP PHASE1:Hg19::chr7:100200840..100200890,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5118 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8738 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=54bp_to_ENST00000462260_5end | |||
|cluster_id=chr7:100200840..100200890,+ | |||
|coexpression_cluster_id=C1641 | |||
|description=CAGE_peak_6_at_PCOLCE_5end | |||
|id=chr7:100200840..100200890,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.99e-51!180;CL:0000057!1.01e-25!75;CL:0000393!3.71e-18!60;CL:0000211!3.71e-18!60;CL:0000183!8.38e-18!59;CL:0000680!9.11e-18!57;CL:0000056!9.11e-18!57;CL:0000355!9.11e-18!57;CL:0000187!1.43e-17!54;CL:0000192!3.68e-12!42;CL:0000514!3.68e-12!42;CL:0002620!2.28e-11!23;CL:0000499!8.75e-09!27;CL:0000048!4.66e-08!430;CL:0000034!1.45e-07!444;CL:0000327!1.83e-07!14;CL:0000359!1.87e-07!32;CL:0000723!2.65e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002620;6.20e-15;23!CL:0000187;3.96e-12;55!CL:0000393;4.16e-12;61!CL:0000211;4.16e-12;61!CL:0000499;3.81e-10;28!CL:0000057;4.26e-10;73!CL:0000192;9.42e-10;43!CL:0000327;7.64e-09;15!CL:0002320;3.24e-08;188!CL:0002570;8.82e-08;8!CL:0000188;1.49e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.32e-26,76;CL:0000187,2.80e-20,55;CL:0000393,5.47e-20,61;CL:0000211,5.47e-20,61;CL:0000680,1.74e-18,58;CL:0000056,1.74e-18,58;CL:0000355,1.74e-18,58;CL:0000048,2.18e-16,427;CL:0000723,1.47e-15,433;CL:0002620,3.57e-15,23;CL:0000034,6.65e-15,441;CL:0000192,4.81e-13,43;CL:0000514,4.81e-13,43;CL:0000499,2.79e-10,28;CL:0000327,6.05e-09,15;CL:0002570,8.43e-08,8;CL:0000188,1.30e-07,9;CL:0002320,1.46e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000355;2.90e-10;58!CL:0000514;9.42e-10;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.43e-24!83;UBERON:0002329!1.43e-24!83;UBERON:0003077!1.43e-24!83;UBERON:0003059!1.43e-24!83;UBERON:0007282!1.43e-24!83;UBERON:0009618!1.43e-24!83;UBERON:0007285!1.43e-24!83;UBERON:0004290!1.48e-21!70;UBERON:0000486!6.86e-18!82;UBERON:0002385!7.07e-18!63;UBERON:0001015!7.07e-18!63;UBERON:0000383!7.07e-18!63;UBERON:0001134!1.09e-17!61;UBERON:0002036!1.09e-17!61;UBERON:0003082!1.09e-17!61;UBERON:0003102!3.53e-11!95;UBERON:0005256!7.34e-11!143;UBERON:0000475!1.34e-09!365;UBERON:0002199!3.10e-09!45;UBERON:0002416!3.10e-09!45;UBERON:0002097!8.79e-09!40;UBERON:0002100!9.40e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002204;7.33e-10;70!UBERON:0004905;1.45e-09;8!UBERON:0000982;1.45e-09;8!UBERON:0004770;1.45e-09;8!UBERON:0001434;6.99e-09;36!UBERON:0002384;8.34e-09;198!UBERON:0002097;3.16e-08;41!UBERON:0002385;6.42e-08;31!UBERON:0001015;6.42e-08;31!UBERON:0000383;6.42e-08;31!UBERON:0000075;6.45e-08;16!UBERON:0002199;6.63e-08;46!UBERON:0002416;6.63e-08;46!UBERON:0003102;8.79e-08;50!UBERON:0011135;3.33e-07;5!UBERON:0002216;3.33e-07;5!UBERON:0011134;3.33e-07;5!UBERON:0002209;3.33e-07;5!UBERON:0002213;3.33e-07;5!UBERON:0007844;3.33e-07;5!UBERON:0011138;3.33e-07;5!UBERON:0001130;3.33e-07;5!UBERON:0001066;3.33e-07;5!UBERON:0001468;3.33e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.29e-22,73;UBERON:0002329,2.87e-22,71;UBERON:0003059,2.87e-22,71;UBERON:0007282,2.87e-22,71;UBERON:0004290,2.87e-22,71;UBERON:0009618,2.87e-22,71;UBERON:0003077,1.03e-21,72;UBERON:0007285,1.03e-21,72;UBERON:0000486,7.93e-20,83;UBERON:0007503,1.02e-18,78;UBERON:0001134,2.32e-17,62;UBERON:0002036,2.32e-17,62;UBERON:0003082,2.32e-17,62;UBERON:0002385,2.24e-16,64;UBERON:0001015,2.24e-16,64;UBERON:0000383,2.24e-16,64;UBERON:0002199,4.14e-12,46;UBERON:0002416,4.14e-12,46;UBERON:0003104,1.19e-11,160;UBERON:0009142,1.19e-11,160;UBERON:0003102,3.60e-11,99;UBERON:0002097,3.78e-11,41;UBERON:0002204,8.61e-10,167;UBERON:0004905,1.26e-09,8;UBERON:0000982,1.26e-09,8;UBERON:0004770,1.26e-09,8;UBERON:0005256,2.17e-09,122;UBERON:0002384,7.76e-09,371;UBERON:0000075,6.46e-08,16;UBERON:0011135,3.34e-07,5;UBERON:0002216,3.34e-07,5;UBERON:0011134,3.34e-07,5;UBERON:0002209,3.34e-07,5;UBERON:0002213,3.34e-07,5;UBERON:0005856,3.34e-07,5;UBERON:0005866,3.34e-07,5;UBERON:0005863,3.34e-07,5;UBERON:0007844,3.34e-07,5;UBERON:0011138,3.34e-07,5;UBERON:0001130,3.34e-07,5;UBERON:0001066,3.34e-07,5;UBERON:0001468,3.34e-07,5 | |||
|phase1_expression=0.726713517082227,1.2846031433459,0,2.00146596706261,0,0.872338524100369,0,0,3.3954131665979,0,0,0,0,12.8717007078448,11.2675107747491,6.05092631806598,1.20538905604795,1.46062018077475,1.46379839637152,2.33930010345897,7.75202626728161,2.5076377718247,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,6.03630773733273,1.40648818027883,3.2529523714611,6.01605492763067,5.21447468258965,2.3858578411533,2.91980922181582,1.03988298880475,0.443458794925128,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,3.29239330327907,0.397227542439656,6.02356903572509,6.02936249737207,0,0,0.74000264525148,1.55605517699883,0.942974704487816,1.14423332179421,8.02194366518136,9.21881479167998,7.26396438684769,2.80944069147288,1.71141546463335,2.24173020827702,1.17434498643765,2.10434827678571,2.10676210053373,2.65400422631361,2.21101771161182,5.57959218349133,1.18800285728205,6.18167323196392,7.28129089550421,5.74894513452991,2.69337782326506,2.87772595705518,1.10825646193673,8.34057479673592,5.51678032438235,3.15499923703853,0.226864366320042,3.58779271377724,7.901623386287,3.81477422087211,3.00091096084402,6.90451945897541,4.12224864073007,3.7223371266318,2.36286865137773,5.74878330451072,3.78650661366172,6.44349290496095,10.1837015795851,2.84007674013291,1.81353776809752,5.76506013855658,0,0,0,1.21973706129595,0.530119073285941,0.464775771478074,0.621966330092223,0.756962552626885,0,4.69348596989448,10.2918550110862,4.14404764057442,4.17931135228781,5.0531563716871,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,5.88034845542168,0,0,0,0,0,2.40194934417936,0,0,0,0,1.95484983186195,8.31947828223663,0,0.463721619900307,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.4214489204541,0.102827492703324,0,0,5.15802987988659,5.23152082599936,4.91366515000365,0,42.9187735022259,1.690605505112,6.64845291462176,6.24044621468197,4.37252536245642,4.25547396069835,5.59486575933809,0.57191197463259,7.05408087008876,7.40916303102692,2.28015329005615,0.710783897485092,6.33561498346743,0,0,0,0,0,0,0.239624855491583,4.59447743336456,0,0.289562613335158,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,15.0910534814542,25.0085260529839,9.49427582949075,5.61521326133179,5.35286966391485,3.31175071571263,2.34282829985426,6.92176029373754,4.5481500811197,14.4862299809507,9.29915837949611,5.8998133933345,5.82120216936155,16.2514960694075,16.4708843429211,0,0,0,0.303127571446259,0,0.907170879989041,0.496215615637554,0.460385919864187,1.12264037773229,0.640695746278505,1.53512174720011,0.64341568457443,0,6.78522652731684,5.50441348470694,7.30931688522901,1.55776328755086,6.2753604368378,0.120859449591622,0,0,3.55924789310281,4.37018803216121,6.29397191805236,0,0,0,0,0,0,0,0,0,0.541892875087706,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0.309123034943167,2.47237555009527,1.48517099857058,0,0.650060246036521,0,4.64019447802185,7.24028500438829,7.21467271212809,4.13509717453592,8.48619934459362,7.97591816528257,5.88063729171096,6.6774026735053,0,0,0,0,2.78907329578371,1.5740617341532,2.0911118104818,2.15623506123262,0,3.47973196830029,1.29726953372744,0.429374660225974,2.232950216158,1.89827654831236,0.190630193923825,2.81487570442467,5.13526785640705,7.95508119814842,0.78494864019923,2.15846949099978,4.11805544604082,3.41655966802491,0.808729926293264,1.58510321173008,0,6.82687234725426,0.487426979262569,3.16950440270266,6.41549583617533,2.96951407102797,9.04064932961942,4.96228809191512,0,0,3.47265320560013,6.55894752046633,0.811641507850816,3.40805847909725,4.50712964051586,2.58140433967293,1.57198465620994,0,5.67617702512956,4.64436797654861,9.54955189583715,10.62524886544,16.0969971312692,0,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,1.28188885352968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0,0,0,0.333926115068718,0,0,0.19924798825107,1.10513566212459,0,0,0,0.311039587661807,0,0,0,0.789147245095469,0,1.11136990144637,0,0.185536196323703,0,0,0,0.724999575434793,0,0.254253650292766,0,0.689486746482929,0.291604613383254,0.520874984799877,0,0.120596438625408,0,0,0,0,0,0,1.07730361905316,0,0,0,0,0,2.74792780205587,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0.619202951523374,2.4441205797345,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,3.41207529993835,0,0,0,0,0,0,0.569219092059585,0.277349346026277,0,0,0,0.52418000472609,1.20390222730132,0,0,0,0.678923115418936,0,0.451961481561065,0.137041924646751,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0,3.12579673969312,3.451893928307,2.14196257036276,2.02265412931063,0,0.136905378891993,0,0,0,1.11712960508902,0,0,0.199679000498991,0.429226048136571,0,0.201550417460179,0,0,0,0.164831716762333,0,0,0,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| |||
|short_description=p6@PCOLCE | |||
}} |
Latest revision as of 07:40, 20 September 2015
Short description: | p6@PCOLCE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PCOLCE_5end |
Coexpression cluster: | C1641_Mesenchymal_Nucleus_Fibroblast_tenocyte_Pericytes_normal_Smooth |
Association with transcript: | 54bp_to_ENST00000462260_5end |
EntrezGene: | PCOLCE |
HGNC: | 8738 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.32e-26 | 76 |
muscle cell | 2.80e-20 | 55 |
electrically responsive cell | 5.47e-20 | 61 |
electrically active cell | 5.47e-20 | 61 |
muscle precursor cell | 1.74e-18 | 58 |
myoblast | 1.74e-18 | 58 |
multi-potent skeletal muscle stem cell | 1.74e-18 | 58 |
multi fate stem cell | 2.18e-16 | 427 |
somatic stem cell | 1.47e-15 | 433 |
skin fibroblast | 3.57e-15 | 23 |
stem cell | 6.65e-15 | 441 |
smooth muscle cell | 4.81e-13 | 43 |
smooth muscle myoblast | 4.81e-13 | 43 |
stromal cell | 2.79e-10 | 28 |
extracellular matrix secreting cell | 6.05e-09 | 15 |
mesenchymal stem cell of adipose | 8.43e-08 | 8 |
cell of skeletal muscle | 1.30e-07 | 9 |
connective tissue cell | 1.46e-07 | 361 |