FFCP PHASE1:Hg19::chr17:40557111..40557154,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:40557111..40557154,- to FFCP PHASE1:Hg19::chr17:40557111..40557154,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284119 | |EntrezGene=284119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9688 | |HGNC=9688 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NZI2 | |UniProt=Q6NZI2 | ||
|association_with_transcript=155bp_to_BC004295_5end | |||
|cluster_id=chr17:40557111..40557154,- | |||
|coexpression_cluster_id=C1434 | |||
|description=CAGE_peak_5_at_PTRF_5end | |||
|id=chr17:40557111..40557154,- | |||
|ontology_enrichment_celltype=CL:0000055!1.17e-29!180;CL:0000222!1.02e-24!119;CL:0000057!2.93e-19!75;CL:0000220!3.05e-18!246;CL:0002321!9.01e-18!248;CL:0000680!1.99e-14!57;CL:0000056!1.99e-14!57;CL:0000355!1.99e-14!57;CL:0000183!3.86e-14!59;CL:0000187!1.09e-13!54;CL:0000192!4.19e-13!42;CL:0000514!4.19e-13!42;CL:0000213!8.57e-12!57;CL:0000215!8.57e-12!57;CL:0000393!1.09e-10!60;CL:0000211!1.09e-10!60;CL:0000359!1.32e-10!32;CL:0000144!3.66e-10!625;CL:0002371!1.74e-09!591;CL:0002620!2.41e-08!23;CL:0000548!1.13e-07!679;CL:0000004!1.13e-07!679;CL:0000255!1.13e-07!679;CL:0000115!1.34e-07!35;CL:0000012!2.79e-07!682;CL:0002078!2.87e-07!44;CL:0002139!3.77e-07!24;CL:0002334!5.41e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.81e-11;32!CL:0000192;1.38e-10;43!CL:0002620;4.93e-09;23!CL:0000187;5.77e-09;55!CL:0000057;7.74e-08;73!CL:0002334;9.60e-08;12!CL:0000134;6.62e-07;55!CL:0002320;6.93e-07;188!CL:0000213;8.88e-07;58!CL:0000215;8.88e-07;58!CL:0000115;9.08e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.26e-25,121;CL:0000057,2.47e-19,76;CL:0000680,1.08e-15,58;CL:0000056,1.08e-15,58;CL:0000355,1.08e-15,58;CL:0002321,3.62e-15,250;CL:0000187,8.58e-15,55;CL:0000192,1.19e-14,43;CL:0000514,1.19e-14,43;CL:0000213,6.89e-12,58;CL:0000215,6.89e-12,58;CL:0000393,1.02e-11,61;CL:0000211,1.02e-11,61;CL:0000359,1.60e-11,32;CL:0002620,5.00e-09,23;CL:0000723,2.26e-08,433;CL:0000048,2.94e-08,427;CL:0000115,4.88e-08,36;CL:0002334,1.46e-07,12;CL:0000034,2.11e-07,441;CL:0002078,8.65e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000514;1.38e-10;43!CL:0000355;1.74e-08;58!CL:0000222;6.61e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!1.57e-19!79;UBERON:0007798!1.57e-19!79;UBERON:0000055!2.07e-19!69;UBERON:0004872!5.89e-19!84;UBERON:0001981!1.93e-18!60;UBERON:0007500!1.93e-18!60;UBERON:0004537!1.93e-18!60;UBERON:0006965!1.93e-18!60;UBERON:0000914!1.26e-16!83;UBERON:0002329!1.26e-16!83;UBERON:0003077!1.26e-16!83;UBERON:0003059!1.26e-16!83;UBERON:0007282!1.26e-16!83;UBERON:0009618!1.26e-16!83;UBERON:0007285!1.26e-16!83;UBERON:0005256!2.54e-16!143;UBERON:0000486!8.07e-16!82;UBERON:0001637!1.57e-15!42;UBERON:0003509!1.57e-15!42;UBERON:0004572!1.57e-15!42;UBERON:0003914!1.79e-15!118;UBERON:0004290!3.17e-15!70;UBERON:0000490!4.20e-15!138;UBERON:0001134!6.63e-14!61;UBERON:0002036!6.63e-14!61;UBERON:0003082!6.63e-14!61;UBERON:0002385!6.98e-14!63;UBERON:0001015!6.98e-14!63;UBERON:0000383!6.98e-14!63;UBERON:0001009!2.53e-13!113;UBERON:0004535!2.70e-13!110;UBERON:0002100!5.37e-13!216;UBERON:0003102!5.70e-12!95;UBERON:0004573!1.01e-11!33;UBERON:0004571!1.01e-11!33;UBERON:0000475!4.95e-11!365;UBERON:0000119!3.17e-10!312;UBERON:0000483!4.20e-10!309;UBERON:0000468!1.59e-09!659;UBERON:0000477!2.85e-09!286;UBERON:0003104!1.59e-08!238;UBERON:0009142!1.59e-08!238;UBERON:0002199!3.48e-08!45;UBERON:0002416!3.48e-08!45;UBERON:0002097!1.37e-07!40;UBERON:0004111!1.45e-07!241;UBERON:0000467!2.51e-07!625;UBERON:0000480!3.76e-07!626;UBERON:0000481!6.42e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.11e-12;42!UBERON:0003509;6.11e-12;42!UBERON:0004572;6.11e-12;42!UBERON:0007500;3.30e-11;56!UBERON:0001981;3.30e-11;56!UBERON:0004537;3.30e-11;56!UBERON:0004573;6.32e-11;33!UBERON:0004571;6.32e-11;33!UBERON:0000055;9.69e-10;65!UBERON:0002049;2.58e-08;75!UBERON:0007798;2.58e-08;75!UBERON:0003914;4.08e-07;74!UBERON:0002384;4.20e-07;198!UBERON:0002199;4.35e-07;46!UBERON:0002416;4.35e-07;46 | |||
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|phase1_expression=6.35874327446948,19.0549466262975,5.92008497203079,7.00513088471913,6.70441641640932,15.7020934338066,0,1.89515962028049,1.30592814099919,0.982935746006035,4.18680700783456,0.218441372130172,0.263766978228454,1.23766352960047,2.98257638155124,3.36162573225888,2.41077811209591,2.92124036154949,1.46379839637152,0.738726348460727,2.24400760368678,2.19418305034661,0.572471974262113,1.77936752594749,1.12988375635323,0,0,0,0,0,0,0,3.31326510656075,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,1.2786256184353,3.61439152384566,2.00535164254356,4.92478164466801,0,0.973269740605272,1.03988298880475,4.43458794925128,1.22968699970376,0.654895377488563,0.728590576585084,1.85392221392215,0,0,0,0,0,0,1.78886166630035,0.860234595106124,0.694281003215189,2.26123176769604,2.09749718104953,9.90424950984243,2.92592953151535,3.6178346283706,2.84613010149368,2.00832367658802,4.02829317109147,1.52054421143703,6.34561349625241,2.94130464276695,10.5318453224629,1.87529429396568,0.898117490504679,0.900891843866578,3.06633274931766,4.74632829784064,4.76324534219059,0,0,1.3082821564276,4.96971951695318,5.19185097824777,1.72131935057184,2.29469296599051,2.4826786753885,4.48542080113846,3.20246987189115,3.94668077467456,0.311211035399766,1.88594940897563,3.26923806226917,0.454072282934794,0.576175924479999,0.70296429550139,2.49728061464256,1.71141546463335,2.39117888882882,2.23125547423153,2.75184005425824,1.82586048712923,2.44985005505872,2.57952066354713,2.37649296704261,2.37600571456411,6.42894016124248,0.910161361938026,4.31170885089743,0.841680569770331,2.12701483782339,0.554128230968366,3.95079858792754,11.9530240361618,3.60571341375832,2.26864366320042,5.202299434977,2.13557388818567,4.02670612203168,2.40072876867522,4.225153698776,5.41045134095821,3.7223371266318,3.03797398034279,5.35903528386592,3.02920529092937,3.12969655383818,4.84938170456436,6.74518225781567,4.43309232201617,2.88253006927829,0.966304265816484,2.18196896472668,1.72082757233402,0.243947412259191,0,0.348581828608555,0.310983165046111,0.504641701751257,0.36497735907583,0,14.7945415784364,1.38134921352481,5.10804720835177,4.33127689001751,0.828147600278907,1.85443159085912,2.16909926895134,1.54411561825352,0,0.949082476444386,0.808987848960987,1.56977172100277,0.38474715694639,2.95262181849859,4.20725321410337,1.2347220339942,2.94017422771084,0,0,0,0,0.614942192715568,1.02940686179115,1.53650399572076,3.37205259772859,1.70899253099772,0.740707561268237,0,2.07986957055916,1.44331342025273,0.231860809950154,0.352226082707465,1.58803092537181,2.77791307545966,1.14152491340759,0,0,0,0.234004265139238,0,0,3.35964256397719,1.41775097242386,0.268675568108545,0.871901815541886,1.91691339582606,0,0.44024217006613,0.207328115540772,0.720599767084807,0.50496973370552,0.063497894292169,1.14596527667483,1.17217447210047,1.71072446022705,1.02827492703324,1.8020583470635,0.571652865261156,0.672786506072164,0.43596006883328,1.6134422880609,1.42198887333556,0,4.22651376278,3.19125739901845,7.28052058379563,2.05765899409714,2.83698264046557,3.46348832720929,0.285955987316295,0.542621605391443,2.46972101034231,0.65147236858747,0.355391948742546,0,3.61727252471503,0.871533458600294,2.99918973546171,0,0,0,5.03212196532324,3.44585807502342,0,3.61953266668948,2.67119219315498,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,1.47229790062968,1.00034104211935,0.813795071099207,7.07100929204744,11.5978842718155,4.41566762095017,3.86566669475954,3.31040709700491,18.1926003244788,4.1389228517002,2.65690239414175,3.13427586520895,3.64911180765948,0.391602314925481,1.71571711905428,0,0,0,2.42502057157008,0,0.907170879989041,5.70647957983187,4.29693525206575,15.436305193819,5.25370511948374,3.07024349440022,6.27330292460069,8.90508398669946,6.01417805830357,6.74734556189883,0.739144404124282,2.07701771673448,6.8564123291376,0.604297247958111,9.62431057455767,1.01289087829486,2.87036120411517,4.91646153618136,5.24497659837697,0,0.616122696835318,2.35304930753057,0,0.316654886678627,6.8240030442538,2.2112181685947,1.72732732881711,6.16909010761157,1.35473218771926,2.50844886927427,0.509752546090077,0,0.895499018888713,0,0.261435451024901,0.256450125116389,1.64007322849853,0.976135183992909,0.515205058238611,0.183138929636687,0,0,3.25030123018261,6.42735719376638,0.773365746336976,1.54048617114644,3.37708084397485,1.51620229732984,1.07420244868274,4.0604674295984,2.81247870473133,1.24644849905432,1.4875642382488,2.49847087574638,0.382838137483752,0.910420027699949,4.18360994367557,3.46293581513704,0.6970372701606,1.23213432070436,3.19383618190213,2.60979897622522,2.7798632865588,7.58561899732554,0,0.632758849437452,1.14378116354295,4.35026245229268,1.28381696410176,3.18203247925937,9.41938368239076,1.43897966066652,2.47083326762449,1.41374882814824,3.03273722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| ||
|short_description=p5@PTRF | |||
}} | }} |
Latest revision as of 14:42, 24 September 2015
Short description: | p5@PTRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PTRF_5end |
Coexpression cluster: | C1434_Olfactory_leiomyoma_Adipocyte_Hair_tenocyte_Preadipocyte_Smooth |
Association with transcript: | 155bp_to_BC004295_5end |
EntrezGene: | PTRF |
HGNC: | 9688 |
UniProt: | Q6NZI2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.26e-25 | 121 |
fibroblast | 2.47e-19 | 76 |
muscle precursor cell | 1.08e-15 | 58 |
myoblast | 1.08e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.08e-15 | 58 |
embryonic cell | 3.62e-15 | 250 |
muscle cell | 8.58e-15 | 55 |
smooth muscle cell | 1.19e-14 | 43 |
smooth muscle myoblast | 1.19e-14 | 43 |
lining cell | 6.89e-12 | 58 |
barrier cell | 6.89e-12 | 58 |
electrically responsive cell | 1.02e-11 | 61 |
electrically active cell | 1.02e-11 | 61 |
vascular associated smooth muscle cell | 1.60e-11 | 32 |
skin fibroblast | 5.00e-09 | 23 |
somatic stem cell | 2.26e-08 | 433 |
multi fate stem cell | 2.94e-08 | 427 |
endothelial cell | 4.88e-08 | 36 |
preadipocyte | 1.46e-07 | 12 |
stem cell | 2.11e-07 | 441 |
meso-epithelial cell | 8.65e-07 | 45 |