FFCP PHASE1:Hg19::chr17:41322281..41322328,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:41322281..41322328,-
|short_description=p2@BRCA1
|description=CAGE_peak_2_at_BRCA1_5end
|association_with_transcript=0bp_to_ENST00000393691_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=672 | |EntrezGene=672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1100 | |HGNC=1100 | ||
|TSSclassifier=strong | |||
|UniProt=P38398 | |UniProt=P38398 | ||
|association_with_transcript=0bp_to_ENST00000393691_5end | |||
|cluster_id=chr17:41322281..41322328,- | |||
|description=CAGE_peak_2_at_BRCA1_5end | |||
|id=chr17:41322281..41322328,- | |||
|ontology_enrichment_celltype=CL:0000838!8.79e-07!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.32e-07,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.54e-12!235;DOID:14566!1.01e-11!239;DOID:305!4.00e-11!106;DOID:0050687!4.08e-10!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.21e-12,235;DOID:14566,1.77e-11,239;DOID:305,5.78e-11,106;DOID:0050687,6.32e-10,143 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.83e-18!57;UBERON:0005068!1.83e-18!57;UBERON:0006241!1.83e-18!57;UBERON:0007135!1.83e-18!57;UBERON:0007023!8.73e-18!115;UBERON:0000955!2.41e-16!69;UBERON:0006238!2.41e-16!69;UBERON:0002616!1.66e-15!59;UBERON:0003080!6.26e-15!42;UBERON:0002780!9.29e-15!41;UBERON:0001890!9.29e-15!41;UBERON:0006240!9.29e-15!41;UBERON:0001017!2.30e-14!82;UBERON:0005743!5.73e-13!86;UBERON:0000073!3.29e-12!94;UBERON:0001016!3.29e-12!94;UBERON:0002020!1.00e-11!34;UBERON:0003528!1.00e-11!34;UBERON:0001893!1.79e-11!34;UBERON:0001869!1.81e-11!32;UBERON:0002346!3.55e-11!90;UBERON:0002791!6.84e-11!33;UBERON:0003075!8.48e-11!86;UBERON:0007284!8.48e-11!86;UBERON:0002619!1.23e-10!22;UBERON:0001950!2.62e-10!20;UBERON:0000956!5.20e-09!25;UBERON:0000203!5.20e-09!25;UBERON:0000153!4.33e-08!129;UBERON:0007811!4.33e-08!129;UBERON:0003056!1.00e-07!61;UBERON:0000033!5.22e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.72e-11;22!UBERON:0001950;9.82e-11;20!UBERON:0002780;1.23e-10;41!UBERON:0001890;1.23e-10;41!UBERON:0001869;2.46e-10;32!UBERON:0001893;6.42e-10;34!UBERON:0003528;7.61e-10;34!UBERON:0002020;7.61e-10;34!UBERON:0002791;9.23e-10;32!UBERON:0000073;1.35e-09;53!UBERON:0002616;1.35e-09;53!UBERON:0000956;4.36e-09;25!UBERON:0000203;4.36e-09;25!UBERON:0001017;1.96e-07;75!UBERON:0000955;4.21e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.73e-18,56;UBERON:0005068,1.73e-18,56;UBERON:0006241,1.73e-18,56;UBERON:0007135,1.73e-18,56;UBERON:0007023,4.75e-18,114;UBERON:0000073,1.08e-17,53;UBERON:0002616,1.08e-17,53;UBERON:0000955,2.62e-16,68;UBERON:0006238,2.62e-16,68;UBERON:0002780,4.14e-15,41;UBERON:0001890,4.14e-15,41;UBERON:0003080,4.14e-15,41;UBERON:0006240,4.14e-15,41;UBERON:0001017,1.96e-14,81;UBERON:0001016,9.24e-14,89;UBERON:0003528,5.20e-12,34;UBERON:0002020,5.20e-12,34;UBERON:0001893,9.42e-12,34;UBERON:0001869,9.44e-12,32;UBERON:0002791,3.29e-11,32;UBERON:0002619,4.89e-11,22;UBERON:0011216,1.03e-10,223;UBERON:0001950,1.04e-10,20;UBERON:0002346,3.48e-10,86;UBERON:0003075,8.38e-10,82;UBERON:0007284,8.38e-10,82;UBERON:0000956,3.06e-09,25;UBERON:0000203,3.06e-09,25;UBERON:0003056,2.76e-07,61 | |||
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| ||
|short_description=p2@BRCA1 | |||
}} | }} |
Latest revision as of 17:38, 24 September 2015
Short description: | p2@BRCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_BRCA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393691_5end |
EntrezGene: | BRCA1 |
HGNC: | 1100 |
UniProt: | P38398 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.32e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.73e-18 | 56 |
neural rod | 1.73e-18 | 56 |
future spinal cord | 1.73e-18 | 56 |
neural keel | 1.73e-18 | 56 |
adult organism | 4.75e-18 | 114 |
regional part of nervous system | 1.08e-17 | 53 |
regional part of brain | 1.08e-17 | 53 |
brain | 2.62e-16 | 68 |
future brain | 2.62e-16 | 68 |
regional part of forebrain | 4.14e-15 | 41 |
forebrain | 4.14e-15 | 41 |
anterior neural tube | 4.14e-15 | 41 |
future forebrain | 4.14e-15 | 41 |
central nervous system | 1.96e-14 | 81 |
nervous system | 9.24e-14 | 89 |
brain grey matter | 5.20e-12 | 34 |
gray matter | 5.20e-12 | 34 |
telencephalon | 9.42e-12 | 34 |
cerebral hemisphere | 9.44e-12 | 32 |
regional part of telencephalon | 3.29e-11 | 32 |
regional part of cerebral cortex | 4.89e-11 | 22 |
organ system subdivision | 1.03e-10 | 223 |
neocortex | 1.04e-10 | 20 |
neurectoderm | 3.48e-10 | 86 |
neural plate | 8.38e-10 | 82 |
presumptive neural plate | 8.38e-10 | 82 |
cerebral cortex | 3.06e-09 | 25 |
pallium | 3.06e-09 | 25 |
pre-chordal neural plate | 2.76e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.21e-12 | 235 |
disease of cellular proliferation | 1.77e-11 | 239 |
carcinoma | 5.78e-11 | 106 |
cell type cancer | 6.32e-10 | 143 |