FFCP PHASE1:Hg19::chr2:219433016..219433100,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:219433016..219433100,- to FFCP PHASE1:Hg19::chr2:219433016..219433100,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57695 | |EntrezGene=57695 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20063 | |HGNC=20063 | ||
|TSSclassifier=strong | |||
|UniProt=Q86T82,Q86W68 | |UniProt=Q86T82,Q86W68 | ||
|association_with_transcript=0bp_to_ENST00000258399,ENST00000338465,ENST00000415516,ENST00000454775,NM_020935,uc002vie.2,uc002vif.2,uc002vig.2,uc010fvs.1,uc010zkf.1,uc010zkg.1_5end | |||
|cluster_id=chr2:219433016..219433100,- | |||
|description=CAGE_peak_1_at_USP37_5end | |||
|id=chr2:219433016..219433100,- | |||
|ontology_enrichment_celltype=CL:0000037!6.23e-21!172;CL:0000566!6.23e-21!172;CL:0002032!9.34e-20!165;CL:0000837!9.34e-20!165;CL:0000988!1.72e-18!182;CL:0000738!3.12e-16!140;CL:0002031!1.56e-14!124;CL:0002087!2.69e-12!119;CL:0000763!3.13e-10!112;CL:0000049!3.13e-10!112;CL:0000542!3.94e-10!53;CL:0000051!3.94e-10!53;CL:0000838!7.69e-10!52 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.44e-21,168;CL:0002032,6.63e-20,161;CL:0000837,6.63e-20,161;CL:0000988,4.27e-19,177;CL:0000738,2.18e-16,136;CL:0002031,1.05e-14,120;CL:0002087,1.96e-12,115;CL:0000763,2.43e-10,108;CL:0000049,2.43e-10,108;CL:0000542,3.94e-10,53;CL:0000051,3.94e-10,53;CL:0000838,7.69e-10,52 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!7.02e-10!235;DOID:14566!1.83e-08!239;DOID:305!3.80e-07!106;DOID:0050687!5.59e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,7.02e-10,235;DOID:14566,1.83e-08,239;DOID:305,3.80e-07,106;DOID:0050687,5.59e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!7.90e-14!115;UBERON:0001049!2.63e-10!57;UBERON:0005068!2.63e-10!57;UBERON:0006241!2.63e-10!57;UBERON:0007135!2.63e-10!57;UBERON:0002780!1.42e-09!41;UBERON:0001890!1.42e-09!41;UBERON:0006240!1.42e-09!41;UBERON:0001017!1.90e-09!82;UBERON:0003080!2.17e-09!42;UBERON:0000073!4.55e-09!94;UBERON:0001016!4.55e-09!94;UBERON:0005743!1.40e-08!86;UBERON:0000955!3.11e-08!69;UBERON:0006238!3.11e-08!69;UBERON:0002616!8.69e-08!59;UBERON:0001893!1.04e-07!34;UBERON:0002791!1.40e-07!33;UBERON:0002020!2.36e-07!34;UBERON:0003528!2.36e-07!34;UBERON:0001869!3.78e-07!32;UBERON:0002390!7.70e-07!102;UBERON:0003061!7.70e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.88e-07;41!UBERON:0001890;1.88e-07;41!UBERON:0002791;9.89e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.42e-13,114;UBERON:0001049,1.86e-10,56;UBERON:0005068,1.86e-10,56;UBERON:0006241,1.86e-10,56;UBERON:0007135,1.86e-10,56;UBERON:0001016,5.34e-10,89;UBERON:0000073,6.33e-10,53;UBERON:0002616,6.33e-10,53;UBERON:0002780,1.42e-09,41;UBERON:0001890,1.42e-09,41;UBERON:0003080,1.42e-09,41;UBERON:0006240,1.42e-09,41;UBERON:0001017,1.54e-09,81;UBERON:0000955,2.50e-08,68;UBERON:0006238,2.50e-08,68;UBERON:0001893,1.04e-07,34;UBERON:0003528,2.36e-07,34;UBERON:0002020,2.36e-07,34;UBERON:0002791,2.97e-07,32;UBERON:0001869,3.78e-07,32;UBERON:0002390,6.80e-07,98;UBERON:0003061,6.80e-07,98 | |||
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| ||
|short_description=p1@USP37 | |||
}} | }} |
Latest revision as of 17:47, 24 September 2015
Short description: | p1@USP37 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USP37_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000258399, ENST00000338465, ENST00000415516, ENST00000454775, NM_020935, uc002vie.2, uc002vif.2, uc002vig.2, uc010fvs.1, uc010zkf.1, uc010zkg.1_5end |
EntrezGene: | USP37 |
HGNC: | 20063 |
UniProt: | Q86T82Q86W68 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.44e-21 | 168 |
hematopoietic oligopotent progenitor cell | 6.63e-20 | 161 |
hematopoietic multipotent progenitor cell | 6.63e-20 | 161 |
hematopoietic cell | 4.27e-19 | 177 |
leukocyte | 2.18e-16 | 136 |
hematopoietic lineage restricted progenitor cell | 1.05e-14 | 120 |
nongranular leukocyte | 1.96e-12 | 115 |
myeloid cell | 2.43e-10 | 108 |
common myeloid progenitor | 2.43e-10 | 108 |
lymphocyte | 3.94e-10 | 53 |
common lymphoid progenitor | 3.94e-10 | 53 |
lymphoid lineage restricted progenitor cell | 7.69e-10 | 52 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.42e-13 | 114 |
neural tube | 1.86e-10 | 56 |
neural rod | 1.86e-10 | 56 |
future spinal cord | 1.86e-10 | 56 |
neural keel | 1.86e-10 | 56 |
nervous system | 5.34e-10 | 89 |
regional part of nervous system | 6.33e-10 | 53 |
regional part of brain | 6.33e-10 | 53 |
regional part of forebrain | 1.42e-09 | 41 |
forebrain | 1.42e-09 | 41 |
anterior neural tube | 1.42e-09 | 41 |
future forebrain | 1.42e-09 | 41 |
central nervous system | 1.54e-09 | 81 |
brain | 2.50e-08 | 68 |
future brain | 2.50e-08 | 68 |
telencephalon | 1.04e-07 | 34 |
brain grey matter | 2.36e-07 | 34 |
gray matter | 2.36e-07 | 34 |
regional part of telencephalon | 2.97e-07 | 32 |
cerebral hemisphere | 3.78e-07 | 32 |
hematopoietic system | 6.80e-07 | 98 |
blood island | 6.80e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
cancer | 7.02e-10 | 235 |
disease of cellular proliferation | 1.83e-08 | 239 |
carcinoma | 3.80e-07 | 106 |
cell type cancer | 5.59e-07 | 143 |