FFCP PHASE1:Hg19::chr1:220701663..220701684,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4139 | |EntrezGene=4139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6896 | |HGNC=6896 | ||
|TSSclassifier=strong | |||
|UniProt=Q9P0L2 | |UniProt=Q9P0L2 | ||
|association_with_transcript=95bp_to_ENST00000366918,ENST00000402574,NM_018650,uc001hml.2,uc001hmm.3,uc001hmn.3,uc009xdw.2,uc010pun.1_5end | |association_with_transcript=95bp_to_ENST00000366918,ENST00000402574,NM_018650,uc001hml.2,uc001hmm.3,uc001hmn.3,uc009xdw.2,uc010pun.1_5end | ||
|cluster_id=chr1:220701663..220701684,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_6_at_MARK1_5end | |description=CAGE_peak_6_at_MARK1_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;6.67e-09;2 | |ontology_enrichment_celltype_v019=CL:0000047;6.67e-09;2 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.86e-46;3!UBERON:0009117;3.33e-07;10!UBERON:0005564;3.33e-07;10 | |ontology_enrichment_development_v019=UBERON:0006215;3.86e-46;3!UBERON:0009117;3.33e-07;10!UBERON:0005564;3.33e-07;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.25e-31!57;UBERON:0005068!1.25e-31!57;UBERON:0006241!1.25e-31!57;UBERON:0007135!1.25e-31!57;UBERON:0002616!4.79e-30!59;UBERON:0003080!6.27e-29!42;UBERON:0002780!9.37e-28!41;UBERON:0001890!9.37e-28!41;UBERON:0006240!9.37e-28!41;UBERON:0003075!1.83e-27!86;UBERON:0007284!1.83e-27!86;UBERON:0000955!2.53e-27!69;UBERON:0006238!2.53e-27!69;UBERON:0001017!3.99e-27!82;UBERON:0000073!1.54e-26!94;UBERON:0001016!1.54e-26!94;UBERON:0005743!3.34e-26!86;UBERON:0002346!1.87e-25!90;UBERON:0003056!2.48e-25!61;UBERON:0002020!1.15e-24!34;UBERON:0003528!1.15e-24!34;UBERON:0001893!1.82e-24!34;UBERON:0002791!1.97e-23!33;UBERON:0001869!5.51e-23!32;UBERON:0000033!1.36e-22!123;UBERON:0000153!1.80e-21!129;UBERON:0007811!1.80e-21!129;UBERON:0004121!4.06e-20!169;UBERON:0007023!5.83e-20!115;UBERON:0000924!3.82e-19!173;UBERON:0006601!3.82e-19!173;UBERON:0000956!7.55e-18!25;UBERON:0000203!7.55e-18!25;UBERON:0001950!8.19e-16!20;UBERON:0002619!1.13e-15!22;UBERON:0000064!7.99e-10!219;UBERON:0002308!2.73e-08!9;UBERON:0000125!2.73e-08!9;UBERON:0002298!1.46e-07!8;UBERON:0001872!2.71e-07!5 | |ontology_enrichment_uberon=UBERON:0001049!1.25e-31!57;UBERON:0005068!1.25e-31!57;UBERON:0006241!1.25e-31!57;UBERON:0007135!1.25e-31!57;UBERON:0002616!4.79e-30!59;UBERON:0003080!6.27e-29!42;UBERON:0002780!9.37e-28!41;UBERON:0001890!9.37e-28!41;UBERON:0006240!9.37e-28!41;UBERON:0003075!1.83e-27!86;UBERON:0007284!1.83e-27!86;UBERON:0000955!2.53e-27!69;UBERON:0006238!2.53e-27!69;UBERON:0001017!3.99e-27!82;UBERON:0000073!1.54e-26!94;UBERON:0001016!1.54e-26!94;UBERON:0005743!3.34e-26!86;UBERON:0002346!1.87e-25!90;UBERON:0003056!2.48e-25!61;UBERON:0002020!1.15e-24!34;UBERON:0003528!1.15e-24!34;UBERON:0001893!1.82e-24!34;UBERON:0002791!1.97e-23!33;UBERON:0001869!5.51e-23!32;UBERON:0000033!1.36e-22!123;UBERON:0000153!1.80e-21!129;UBERON:0007811!1.80e-21!129;UBERON:0004121!4.06e-20!169;UBERON:0007023!5.83e-20!115;UBERON:0000924!3.82e-19!173;UBERON:0006601!3.82e-19!173;UBERON:0000956!7.55e-18!25;UBERON:0000203!7.55e-18!25;UBERON:0001950!8.19e-16!20;UBERON:0002619!1.13e-15!22;UBERON:0000064!7.99e-10!219;UBERON:0002308!2.73e-08!9;UBERON:0000125!2.73e-08!9;UBERON:0002298!1.46e-07!8;UBERON:0001872!2.71e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002680;2.59e-27;9!UBERON:0001895;2.59e-27;9!UBERON:0002037;1.76e-23;6!UBERON:0004733;1.35e-20;12!UBERON:0002028;1.35e-20;12!UBERON:0004732;4.83e-19;13!UBERON:0000473;8.61e-09;8!UBERON:0001016;9.78e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0002680;2.59e-27;9!UBERON:0001895;2.59e-27;9!UBERON:0002037;1.76e-23;6!UBERON:0004733;1.35e-20;12!UBERON:0002028;1.35e-20;12!UBERON:0004732;4.83e-19;13!UBERON:0000473;8.61e-09;8!UBERON:0001016;9.78e-07;83 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,3.19e-27,9;UBERON:0001895,3.19e-27,9;UBERON:0010092,3.19e-27,9;UBERON:0002037,1.83e-23,6;UBERON:0006215,1.83e-23,6;UBERON:0004733,1.57e-20,12;UBERON:0002028,1.57e-20,12;UBERON:0007277,1.57e-20,12;UBERON:0004732,5.56e-19,13;UBERON:0003076,1.67e-16,15;UBERON:0003057,1.67e-16,15;UBERON:0000073,6.55e-10,53;UBERON:0002616,6.55e-10,53;UBERON:0001049,2.25e-09,56;UBERON:0005068,2.25e-09,56;UBERON:0006241,2.25e-09,56;UBERON:0007135,2.25e-09,56;UBERON:0000473,8.62e-09,8;UBERON:0003075,1.57e-08,82;UBERON:0007284,1.57e-08,82;UBERON:0001017,1.70e-08,81;UBERON:0002346,4.10e-08,86;UBERON:0001016,1.29e-07,89;UBERON:0000955,1.39e-07,68;UBERON:0006238,1.39e-07,68 | |||
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| ||
|short_description=p6@MARK1 | |short_description=p6@MARK1 | ||
}} | }} |
Latest revision as of 06:34, 25 September 2015
Short description: | p6@MARK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_MARK1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 95bp_to_ENST00000366918, ENST00000402574, NM_018650, uc001hml.2, uc001hmm.3, uc001hmn.3, uc009xdw.2, uc010pun.1_5end |
EntrezGene: | MARK1 |
HGNC: | 6896 |
UniProt: | Q9P0L2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 3.19e-27 | 9 |
metencephalon | 3.19e-27 | 9 |
future metencephalon | 3.19e-27 | 9 |
cerebellum | 1.83e-23 | 6 |
rhombic lip | 1.83e-23 | 6 |
segmental subdivision of hindbrain | 1.57e-20 | 12 |
hindbrain | 1.57e-20 | 12 |
presumptive hindbrain | 1.57e-20 | 12 |
segmental subdivision of nervous system | 5.56e-19 | 13 |
posterior neural tube | 1.67e-16 | 15 |
chordal neural plate | 1.67e-16 | 15 |
regional part of nervous system | 6.55e-10 | 53 |
regional part of brain | 6.55e-10 | 53 |
neural tube | 2.25e-09 | 56 |
neural rod | 2.25e-09 | 56 |
future spinal cord | 2.25e-09 | 56 |
neural keel | 2.25e-09 | 56 |
testis | 8.62e-09 | 8 |
neural plate | 1.57e-08 | 82 |
presumptive neural plate | 1.57e-08 | 82 |
central nervous system | 1.70e-08 | 81 |
neurectoderm | 4.10e-08 | 86 |
nervous system | 1.29e-07 | 89 |
brain | 1.39e-07 | 68 |
future brain | 1.39e-07 | 68 |