FFCP PHASE1:Mm9::chr10:126497394..126497443,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216438 | |EntrezGene=216438 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TZ87 | |UniProt=Q3TZ87 | ||
|association_with_transcript=-154bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end | |association_with_transcript=-154bp_to_ENSMUST00000040307,NM_001033262,uc007hhu.1_5end | ||
|cluster_id=chr10:126497394..126497443,- | |||
|description=CAGE_peak_3_at_March9_5end | |description=CAGE_peak_3_at_March9_5end | ||
|id=chr10:126497394..126497443,- | |id=chr10:126497394..126497443,- | ||
|ontology_enrichment_celltype=CL:0000221!4.94e-19!44;CL:0000133!4.94e-19!44;CL:0002319!1.07e-18!43;CL:0000540!3.31e-18!33;CL:0000047!3.31e-18!33;CL:0000031!3.31e-18!33;CL:0000404!3.31e-18!33;CL:0000055!4.24e-18!50;CL:0000393!6.43e-18!39;CL:0000211!6.43e-18!39;CL:0000117!1.24e-15!23;CL:0000337!1.24e-15!23;CL:0002321!1.61e-10!70;CL:0000220!1.61e-10!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,7.46e-20,44;CL:0000133,7.46e-20,44;CL:0002319,1.67e-19,43;CL:0000540,5.47e-19,33;CL:0000047,5.47e-19,33;CL:0000031,5.47e-19,33;CL:0000404,5.47e-19,33;CL:0000393,2.23e-18,39;CL:0000211,2.23e-18,39;CL:0000117,2.72e-16,23;CL:0000337,2.72e-16,23;CL:0002321,6.96e-11,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.63e-33!102;UBERON:0000924!5.63e-33!102;UBERON:0006601!5.63e-33!102;UBERON:0001017!1.67e-32!73;UBERON:0005743!1.67e-32!73;UBERON:0000073!1.04e-31!75;UBERON:0001016!1.04e-31!75;UBERON:0002346!7.93e-28!71;UBERON:0003075!7.93e-28!71;UBERON:0007284!7.93e-28!71;UBERON:0000033!2.87e-24!63;UBERON:0001049!2.61e-23!52;UBERON:0005068!2.61e-23!52;UBERON:0006241!2.61e-23!52;UBERON:0007135!2.61e-23!52;UBERON:0000955!1.12e-21!50;UBERON:0006238!1.12e-21!50;UBERON:0002616!2.98e-21!49;UBERON:0003056!4.67e-19!49;UBERON:0003080!3.05e-17!40;UBERON:0002020!4.27e-17!34;UBERON:0002780!1.08e-16!39;UBERON:0001890!1.08e-16!39;UBERON:0006240!1.08e-16!39;UBERON:0002791!5.89e-14!29;UBERON:0003528!5.89e-14!29;UBERON:0001893!5.89e-14!29;UBERON:0007811!1.89e-10!86;UBERON:0000153!4.85e-10!94;UBERON:0000956!3.19e-09!21;UBERON:0001869!3.19e-09!21;UBERON:0000203!3.19e-09!21;UBERON:0002619!4.22e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.78e-34,73;UBERON:0001016,3.92e-33,75;UBERON:0004121,8.60e-32,95;UBERON:0000924,8.60e-32,95;UBERON:0006601,8.60e-32,95;UBERON:0002346,1.58e-27,64;UBERON:0003075,1.58e-27,64;UBERON:0007284,1.58e-27,64;UBERON:0000073,1.06e-25,54;UBERON:0010371,4.79e-25,73;UBERON:0001049,2.47e-24,52;UBERON:0005068,2.47e-24,52;UBERON:0006241,2.47e-24,52;UBERON:0007135,2.47e-24,52;UBERON:0000955,9.89e-21,47;UBERON:0006238,9.89e-21,47;UBERON:0002616,2.71e-20,46;UBERON:0003056,7.03e-20,49;UBERON:0010314,1.79e-18,92;UBERON:0003080,5.59e-18,40;UBERON:0002020,7.96e-18,34;UBERON:0002780,2.10e-17,39;UBERON:0001890,2.10e-17,39;UBERON:0006240,2.10e-17,39;UBERON:0003528,1.54e-14,29;UBERON:0002791,1.54e-14,29;UBERON:0001893,1.54e-14,29;UBERON:0000956,1.39e-09,21;UBERON:0001869,1.39e-09,21;UBERON:0000203,1.39e-09,21;UBERON:0002619,2.31e-07,17;UBERON:0003076,5.88e-07,12;UBERON:0003057,5.88e-07,12 | |||
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| ||
|short_description=p3@March9 | |short_description=p3@March9 | ||
}} | }} |
Latest revision as of 17:12, 25 September 2015
Short description: | p3@March9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_March9_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -154bp_to_ENSMUST00000040307, NM_001033262, uc007hhu.1_5end |
EntrezGene: | March9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 7.46e-20 | 44 |
neurectodermal cell | 7.46e-20 | 44 |
neural cell | 1.67e-19 | 43 |
neuron | 5.47e-19 | 33 |
neuronal stem cell | 5.47e-19 | 33 |
neuroblast | 5.47e-19 | 33 |
electrically signaling cell | 5.47e-19 | 33 |
electrically responsive cell | 2.23e-18 | 39 |
electrically active cell | 2.23e-18 | 39 |
CNS neuron (sensu Vertebrata) | 2.72e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.72e-16 | 23 |
embryonic cell | 6.96e-11 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.78e-34 | 73 |
nervous system | 3.92e-33 | 75 |
ectoderm-derived structure | 8.60e-32 | 95 |
ectoderm | 8.60e-32 | 95 |
presumptive ectoderm | 8.60e-32 | 95 |
neurectoderm | 1.58e-27 | 64 |
neural plate | 1.58e-27 | 64 |
presumptive neural plate | 1.58e-27 | 64 |
regional part of nervous system | 1.06e-25 | 54 |
ecto-epithelium | 4.79e-25 | 73 |
neural tube | 2.47e-24 | 52 |
neural rod | 2.47e-24 | 52 |
future spinal cord | 2.47e-24 | 52 |
neural keel | 2.47e-24 | 52 |
brain | 9.89e-21 | 47 |
future brain | 9.89e-21 | 47 |
regional part of brain | 2.71e-20 | 46 |
pre-chordal neural plate | 7.03e-20 | 49 |
structure with developmental contribution from neural crest | 1.79e-18 | 92 |
anterior neural tube | 5.59e-18 | 40 |
gray matter | 7.96e-18 | 34 |
regional part of forebrain | 2.10e-17 | 39 |
forebrain | 2.10e-17 | 39 |
future forebrain | 2.10e-17 | 39 |
brain grey matter | 1.54e-14 | 29 |
regional part of telencephalon | 1.54e-14 | 29 |
telencephalon | 1.54e-14 | 29 |
cerebral cortex | 1.39e-09 | 21 |
cerebral hemisphere | 1.39e-09 | 21 |
pallium | 1.39e-09 | 21 |
regional part of cerebral cortex | 2.31e-07 | 17 |
posterior neural tube | 5.88e-07 | 12 |
chordal neural plate | 5.88e-07 | 12 |