FFCP PHASE1:Mm9::chr5:14514952..14514991,+: Difference between revisions
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{{FFCP|EntrezGene=26875|HGNC=|MCL_coexpression_id=39|UniProt=E9QK94,E9QKM6,D3Z7K1,Q8CHE8,Q9QYX7|association_with_transcript=34bp_to_ENSMUST00000030691,ENSMUST00000071768,ENSMUST00000115309,NM_001110796,NM_011995,uc008wmh.2,uc008wmi.2_5end|description=CAGE_peak_1_at_Pclo_5end|id=chr5:14514952..14514991,+|ontology_enrichment_celltype=CL:0000540!1.28e-11!33;CL:0000047!1.28e-11!33;CL:0000031!1.28e-11!33;CL:0000404!1.28e-11!33;CL:0000117!1.58e-11!23;CL:0000337!1.58e-11!23;CL:0000221!5.47e-09!44;CL:0000133!5.47e-09!44;CL:0002319!7.23e-09!43;CL:0000393!4.03e-07!39;CL:0000211!4.03e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.93e-12,33;CL:0000047,1.93e-12,33;CL:0000031,1.93e-12,33;CL:0000404,1.93e-12,33;CL:0000117,2.42e-12,23;CL:0000337,2.42e-12,23;CL:0000221,2.48e-09,44;CL:0000133,2.48e-09,44;CL:0002319,3.36e-09,43;CL:0000393,3.08e-08,39;CL:0000211,3.08e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.95e-28!71;UBERON:0003075!1.95e-28!71;UBERON:0007284!1.95e-28!71;UBERON:0004121!4.62e-28!102;UBERON:0000924!4.62e-28!102;UBERON:0006601!4.62e-28!102;UBERON:0001017!7.16e-27!73;UBERON:0005743!7.16e-27!73;UBERON:0000073!3.87e-26!75;UBERON:0001016!3.87e-26!75;UBERON:0000033!2.64e-25!63;UBERON:0001049!1.23e-23!52;UBERON:0005068!1.23e-23!52;UBERON:0006241!1.23e-23!52;UBERON:0007135!1.23e-23!52;UBERON:0000955!8.75e-23!50;UBERON:0006238!8.75e-23!50;UBERON:0002616!3.96e-22!49;UBERON:0003056!1.83e-21!49;UBERON:0003080!1.01e-18!40;UBERON:0002780!4.46e-18!39;UBERON:0001890!4.46e-18!39;UBERON:0006240!4.46e-18!39;UBERON:0002020!2.96e-17!34;UBERON:0002791!1.18e-14!29;UBERON:0003528!1.18e-14!29;UBERON:0001893!1.18e-14!29;UBERON:0007811!1.06e-12!86;UBERON:0000153!1.16e-10!94;UBERON:0000956!1.69e-10!21;UBERON:0001869!1.69e-10!21;UBERON:0000203!1.69e-10!21;UBERON:0000468!7.66e-10!333;UBERON:0002619!7.22e-09!17;UBERON:0002021!5.48e-08!10;UBERON:0000411!5.48e-08!10;UBERON:0001950!5.48e-08!10;UBERON:0000922!2.04e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.51e-29,64;UBERON:0003075,1.51e-29,64;UBERON:0007284,1.51e-29,64;UBERON:0001017,6.92e-29,73;UBERON:0001016,9.05e-28,75;UBERON:0000073,3.56e-27,54;UBERON:0004121,4.27e-26,95;UBERON:0000924,4.27e-26,95;UBERON:0006601,4.27e-26,95;UBERON:0001049,9.87e-26,52;UBERON:0005068,9.87e-26,52;UBERON:0006241,9.87e-26,52;UBERON:0007135,9.87e-26,52;UBERON:0010371,1.04e-24,73;UBERON:0003056,4.28e-23,49;UBERON:0000955,9.57e-23,47;UBERON:0006238,9.57e-23,47;UBERON:0002616,4.77e-22,46;UBERON:0003080,3.97e-20,40;UBERON:0002780,1.99e-19,39;UBERON:0001890,1.99e-19,39;UBERON:0006240,1.99e-19,39;UBERON:0002020,1.54e-18,34;UBERON:0010314,1.77e-17,92;UBERON:0003528,1.01e-15,29;UBERON:0002791,1.01e-15,29;UBERON:0001893,1.01e-15,29;UBERON:0000956,3.15e-11,21;UBERON:0001869,3.15e-11,21;UBERON:0000203,3.15e-11,21;UBERON:0002619,1.82e-09,17;UBERON:0002021,1.63e-08,10;UBERON:0000411,1.63e-08,10;UBERON:0001950,1.63e-08,10|phase1_expression=5.12476310735341,0.348975407639361,0,0,0,1.6787927191189,3.27057696833736,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1787446105161,0,0,0.159992422793407,0.45881856213434,0,0,0.430942465371778,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0,0,0,6.32272953503295,1.09843091367236,2.3331587888914,1.1198913730029,1.43752564364972,0,0,0,0,0,0.515672092277442,21.8501777728366,26.4495489636016,20.2826049121977,0,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,13.9980976616445,10.6654691282036,11.567872874326,21.7094748146891,16.565140571371,14.5764051065795,8.24271050756833,8.27296907949019,53.9567816897005,52.7348706291825,45.1603207773356,21.3655786122914,21.0421580285542,26.045668527838,28.4766658981409,30.3891809417107,50.2706235185705,47.7298308467342,45.1318228133156,33.3655008027288,0.605809546665472,1.73814588245607,1.15945795480671,3.44169550792555,0.679971333707751,0.539703191637817,0.649776417447669,0,2.66844398250329,0,0,0,5.35204995151386,0,0,0,0,0.253359865475099,0,2.62622923353838,0,18.2583831049734,5.03107447621794,3.34912026143355,4.84292544237723,5.87818298155228,11.5236932992991,4.27266410520897,0.494389935468748,0.433798070759735,0,0.323533699894818,0,0,1.86391761218122,156.344945604166,144.727674408097,1.02182822083437,0,0,0,63.2116498288352,72.7425958481616,24.5025986620086,94.0389572240216,89.2446946082854,59.0118046549151,55.8109944953086,0.305518091550949,0.124406970610093,1.51633655060205,15.5726973355991,3.12289063110489,4.13823787980251,7.38254732201932,10.2479276128286,15.9205408014107,16.3985561964608,19.9584673312222,30.7857011179429,0.862271971731369,1.13463648100692,0.351902248327898,0.43839146485515,2.22437799380478,0.348252166522167,0.823128545631774,0.796137067273973,0,0,0,0.414251545071004,0.234526059981096,0.540186184383045,0.473489471170421,0.590292695242212,0.771335564436891,0.232533944750408,0,0.350296027101508,0.987359099480883,0.492502392237286,0.891756905004413,0.584799949701329,0.439100230582101,0.134206418760372,69.8162629232902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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=26875 | |||
|HGNC= | |||
|MCL_coexpression_id=39 | |||
|TSSclassifier=NA | |||
|UniProt=E9QK94,E9QKM6,D3Z7K1,Q8CHE8,Q9QYX7 | |||
|association_with_transcript=34bp_to_ENSMUST00000030691,ENSMUST00000071768,ENSMUST00000115309,NM_001110796,NM_011995,uc008wmh.2,uc008wmi.2_5end | |||
|cluster_id=chr5:14514952..14514991,+ | |||
|description=CAGE_peak_1_at_Pclo_5end | |||
|id=chr5:14514952..14514991,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.28e-11!33;CL:0000047!1.28e-11!33;CL:0000031!1.28e-11!33;CL:0000404!1.28e-11!33;CL:0000117!1.58e-11!23;CL:0000337!1.58e-11!23;CL:0000221!5.47e-09!44;CL:0000133!5.47e-09!44;CL:0002319!7.23e-09!43;CL:0000393!4.03e-07!39;CL:0000211!4.03e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.93e-12,33;CL:0000047,1.93e-12,33;CL:0000031,1.93e-12,33;CL:0000404,1.93e-12,33;CL:0000117,2.42e-12,23;CL:0000337,2.42e-12,23;CL:0000221,2.48e-09,44;CL:0000133,2.48e-09,44;CL:0002319,3.36e-09,43;CL:0000393,3.08e-08,39;CL:0000211,3.08e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.95e-28!71;UBERON:0003075!1.95e-28!71;UBERON:0007284!1.95e-28!71;UBERON:0004121!4.62e-28!102;UBERON:0000924!4.62e-28!102;UBERON:0006601!4.62e-28!102;UBERON:0001017!7.16e-27!73;UBERON:0005743!7.16e-27!73;UBERON:0000073!3.87e-26!75;UBERON:0001016!3.87e-26!75;UBERON:0000033!2.64e-25!63;UBERON:0001049!1.23e-23!52;UBERON:0005068!1.23e-23!52;UBERON:0006241!1.23e-23!52;UBERON:0007135!1.23e-23!52;UBERON:0000955!8.75e-23!50;UBERON:0006238!8.75e-23!50;UBERON:0002616!3.96e-22!49;UBERON:0003056!1.83e-21!49;UBERON:0003080!1.01e-18!40;UBERON:0002780!4.46e-18!39;UBERON:0001890!4.46e-18!39;UBERON:0006240!4.46e-18!39;UBERON:0002020!2.96e-17!34;UBERON:0002791!1.18e-14!29;UBERON:0003528!1.18e-14!29;UBERON:0001893!1.18e-14!29;UBERON:0007811!1.06e-12!86;UBERON:0000153!1.16e-10!94;UBERON:0000956!1.69e-10!21;UBERON:0001869!1.69e-10!21;UBERON:0000203!1.69e-10!21;UBERON:0000468!7.66e-10!333;UBERON:0002619!7.22e-09!17;UBERON:0002021!5.48e-08!10;UBERON:0000411!5.48e-08!10;UBERON:0001950!5.48e-08!10;UBERON:0000922!2.04e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.51e-29,64;UBERON:0003075,1.51e-29,64;UBERON:0007284,1.51e-29,64;UBERON:0001017,6.92e-29,73;UBERON:0001016,9.05e-28,75;UBERON:0000073,3.56e-27,54;UBERON:0004121,4.27e-26,95;UBERON:0000924,4.27e-26,95;UBERON:0006601,4.27e-26,95;UBERON:0001049,9.87e-26,52;UBERON:0005068,9.87e-26,52;UBERON:0006241,9.87e-26,52;UBERON:0007135,9.87e-26,52;UBERON:0010371,1.04e-24,73;UBERON:0003056,4.28e-23,49;UBERON:0000955,9.57e-23,47;UBERON:0006238,9.57e-23,47;UBERON:0002616,4.77e-22,46;UBERON:0003080,3.97e-20,40;UBERON:0002780,1.99e-19,39;UBERON:0001890,1.99e-19,39;UBERON:0006240,1.99e-19,39;UBERON:0002020,1.54e-18,34;UBERON:0010314,1.77e-17,92;UBERON:0003528,1.01e-15,29;UBERON:0002791,1.01e-15,29;UBERON:0001893,1.01e-15,29;UBERON:0000956,3.15e-11,21;UBERON:0001869,3.15e-11,21;UBERON:0000203,3.15e-11,21;UBERON:0002619,1.82e-09,17;UBERON:0002021,1.63e-08,10;UBERON:0000411,1.63e-08,10;UBERON:0001950,1.63e-08,10 | |||
|phase1_expression=5.12476310735341,0.348975407639361,0,0,0,1.6787927191189,3.27057696833736,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1787446105161,0,0,0.159992422793407,0.45881856213434,0,0,0.430942465371778,0.190023419456374,0,0,0,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0,0,0,0,0,0,0,6.32272953503295,1.09843091367236,2.3331587888914,1.1198913730029,1.43752564364972,0,0,0,0,0,0.515672092277442,21.8501777728366,26.4495489636016,20.2826049121977,0,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,13.9980976616445,10.6654691282036,11.567872874326,21.7094748146891,16.565140571371,14.5764051065795,8.24271050756833,8.27296907949019,53.9567816897005,52.7348706291825,45.1603207773356,21.3655786122914,21.0421580285542,26.045668527838,28.4766658981409,30.3891809417107,50.2706235185705,47.7298308467342,45.1318228133156,33.3655008027288,0.605809546665472,1.73814588245607,1.15945795480671,3.44169550792555,0.679971333707751,0.539703191637817,0.649776417447669,0,2.66844398250329,0,0,0,5.35204995151386,0,0,0,0,0.253359865475099,0,2.62622923353838,0,18.2583831049734,5.03107447621794,3.34912026143355,4.84292544237723,5.87818298155228,11.5236932992991,4.27266410520897,0.494389935468748,0.433798070759735,0,0.323533699894818,0,0,1.86391761218122,156.344945604166,144.727674408097,1.02182822083437,0,0,0,63.2116498288352,72.7425958481616,24.5025986620086,94.0389572240216,89.2446946082854,59.0118046549151,55.8109944953086,0.305518091550949,0.124406970610093,1.51633655060205,15.5726973355991,3.12289063110489,4.13823787980251,7.38254732201932,10.2479276128286,15.9205408014107,16.3985561964608,19.9584673312222,30.7857011179429,0.862271971731369,1.13463648100692,0.351902248327898,0.43839146485515,2.22437799380478,0.348252166522167,0.823128545631774,0.796137067273973,0,0,0,0.414251545071004,0.234526059981096,0.540186184383045,0.473489471170421,0.590292695242212,0.771335564436891,0.232533944750408,0,0.350296027101508,0.987359099480883,0.492502392237286,0.891756905004413,0.584799949701329,0.439100230582101,0.134206418760372,69.8162629232902,24.594202358649,1.32167513193519,0.528901133327089,1.49301775374664,3.94802342162745,5.02583099156164,3.42861991859682,2.2237804384487,2.47293313946327,1.42358718463353,2.47048432086016,2.76468729680296,1.79060824837036,1.9496408711912,0.898819408654221,0.648414149624083,0.796565093017469,0.758671603812327,5.02693455482807,7.88954149711563,2.44381593414377,2.90928730751439,3.57692681440625,3.60448261608267,6.7900668070617,7.37894020854462,5.55287237648102,1.77871576252289,0.667380422864376,0.393117990226406,0.224862112384854,0.405720242777006,0,0.50925170356284,0.287696137450811,0,0,0,0.372140947668503,0,0,0.179397413521912,0.482443521363367,3.32555742299888,0.947457058852424,2.77040459951444,1.52770577197669,1.64283173801951,1.00503754465089,0.952174563544055,1.17080188714679,1.10344600874334,1.99318220683897,2.55127629851979,1.47476983244164,1.72684981865896,2.02508682014116,0,0,0.983528546038072,0.827810238914197,39.4954451369968,41.3757253670477,0,0.504941854408746,5.04813151066011,5.0757036758563,10.1248996934415,2.15071918157297,2.00518806674155,1.13230612315533,5.66734982344852,7.89090816360542,7.90575555893047,55.2672664245508,1.98716119291576,0.178065603667255,0.162886959353576,0.824850614862677,21.2392221343941,9.22566417388929,17.8370898609203,24.5186603682668,15.0603965369194,23.9799415396263,15.7641258832615,9.45187696641514,13.1904030002347,19.9103157499564,18.9753495434998,14.4389760547462,50.7255012573144,4.50152735078276,2.06973894052407,10.7168517515796,25.1823131772028,20.155676389034,18.5940393280397,6.39376393140658,0,0.21183207086382,2.64634077665954,2.30840754118072,1.13025098687134,0.965006798850494,0.954978752025092,0.164140899745061,0.874442509889552,42.2769688583962,0,2.68302928352189,0.370389054739423,0.188368457004691,0.136694227721025,0,0,0.139951452323658,0.138199973804424,1.90934123603023,2.21435195506795,9.35269548783504,3.45617090629764,2.50905955217362,1.9652630737156,2.56242258131159,1.98368293740806,3.92633912976044,0.129614973291793,1.86401793926078,1.12738587736838,0.149516546043979,0.496375471371293,0.388902376688095,0.904118764344118,1.01373675294467,0.704143431874524,0.2604087696879,2.72634295506848,1.93267296660805,0.864090018773596,0.632022241256357,1.62180172232131,3.18403967210964,1.68897069871134,1.07416017400489,1.19208812868759,0.360586348559907,1.03382669022204,0.302899349844443,0.762068066549998,0.201652370273681,0.194915761479505,0.481059208201647,0.467507608726276,1.13365191807606,0.221985953374065,0,0,1.54551675225752,0.187682475451182,0.73260649706906,1.2862102744744,1.00314420807073,92.6193021891989,66.2868340570335,71.0390436664852,65.8197688376324,89.7458100899541,95.1796310711023,89.1029700305984,87.812634628723,91.0816242058251,91.1258148683203,2.49089634202024,6.78342284781753,4.26834014385335,5.83456120963906,3.98265008993166,8.27295788025063,5.55616819504038,10.0957178047058,8.02298023979538,7.32821914115013,7.85785829659743,8.1109326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| |||
|short_description=p1@Pclo | |||
}} |
Latest revision as of 17:16, 25 September 2015
Short description: | p1@Pclo |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pclo_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | 34bp_to_ENSMUST00000030691, ENSMUST00000071768, ENSMUST00000115309, NM_001110796, NM_011995, uc008wmh.2, uc008wmi.2_5end |
EntrezGene: | Pclo |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.93e-12 | 33 |
neuronal stem cell | 1.93e-12 | 33 |
neuroblast | 1.93e-12 | 33 |
electrically signaling cell | 1.93e-12 | 33 |
CNS neuron (sensu Vertebrata) | 2.42e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.42e-12 | 23 |
ectodermal cell | 2.48e-09 | 44 |
neurectodermal cell | 2.48e-09 | 44 |
neural cell | 3.36e-09 | 43 |
electrically responsive cell | 3.08e-08 | 39 |
electrically active cell | 3.08e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.51e-29 | 64 |
neural plate | 1.51e-29 | 64 |
presumptive neural plate | 1.51e-29 | 64 |
central nervous system | 6.92e-29 | 73 |
nervous system | 9.05e-28 | 75 |
regional part of nervous system | 3.56e-27 | 54 |
ectoderm-derived structure | 4.27e-26 | 95 |
ectoderm | 4.27e-26 | 95 |
presumptive ectoderm | 4.27e-26 | 95 |
neural tube | 9.87e-26 | 52 |
neural rod | 9.87e-26 | 52 |
future spinal cord | 9.87e-26 | 52 |
neural keel | 9.87e-26 | 52 |
ecto-epithelium | 1.04e-24 | 73 |
pre-chordal neural plate | 4.28e-23 | 49 |
brain | 9.57e-23 | 47 |
future brain | 9.57e-23 | 47 |
regional part of brain | 4.77e-22 | 46 |
anterior neural tube | 3.97e-20 | 40 |
regional part of forebrain | 1.99e-19 | 39 |
forebrain | 1.99e-19 | 39 |
future forebrain | 1.99e-19 | 39 |
gray matter | 1.54e-18 | 34 |
structure with developmental contribution from neural crest | 1.77e-17 | 92 |
brain grey matter | 1.01e-15 | 29 |
regional part of telencephalon | 1.01e-15 | 29 |
telencephalon | 1.01e-15 | 29 |
cerebral cortex | 3.15e-11 | 21 |
cerebral hemisphere | 3.15e-11 | 21 |
pallium | 3.15e-11 | 21 |
regional part of cerebral cortex | 1.82e-09 | 17 |
occipital lobe | 1.63e-08 | 10 |
visual cortex | 1.63e-08 | 10 |
neocortex | 1.63e-08 | 10 |