FFCP PHASE1:Mm9::chr3:80717464..80717588,-: Difference between revisions
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{{FFCP|EntrezGene=14658|HGNC=|MCL_coexpression_id=1|UniProt=P48168,E9PV81,E9Q9K1|association_with_transcript=0bp_to_ENSMUST00000029654,ENSMUST00000132330,ENSMUST00000135043,NM_010298,uc008pog.1,uc008poh.1_5end|description=CAGE_peak_1_at_Glrb_5end|id=chr3:80717464..80717588,-|ontology_enrichment_celltype=CL:0000540!3.27e-13!33;CL:0000047!3.27e-13!33;CL:0000031!3.27e-13!33;CL:0000404!3.27e-13!33;CL:0000117!1.90e-12!23;CL:0000337!1.90e-12!23;CL:0000221!3.77e-12!44;CL:0000133!3.77e-12!44;CL:0002319!5.66e-12!43;CL:0000393!2.26e-09!39;CL:0000211!2.26e-09!39;CL:0000055!2.61e-08!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.55e-14,33;CL:0000047,5.55e-14,33;CL:0000031,5.55e-14,33;CL:0000404,5.55e-14,33;CL:0000117,3.62e-13,23;CL:0000337,3.62e-13,23;CL:0000221,2.85e-12,44;CL:0000133,2.85e-12,44;CL:0002319,4.41e-12,43;CL:0000393,2.43e-09,39;CL:0000211,2.43e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.15e-35!102;UBERON:0000924!5.15e-35!102;UBERON:0006601!5.15e-35!102;UBERON:0002346!1.61e-30!71;UBERON:0003075!1.61e-30!71;UBERON:0007284!1.61e-30!71;UBERON:0001017!3.68e-30!73;UBERON:0005743!3.68e-30!73;UBERON:0000073!6.84e-30!75;UBERON:0001016!6.84e-30!75;UBERON:0000033!4.92e-26!63;UBERON:0001049!3.91e-24!52;UBERON:0005068!3.91e-24!52;UBERON:0006241!3.91e-24!52;UBERON:0007135!3.91e-24!52;UBERON:0000955!3.16e-23!50;UBERON:0006238!3.16e-23!50;UBERON:0002616!1.29e-22!49;UBERON:0003056!3.27e-21!49;UBERON:0003080!2.37e-18!40;UBERON:0002780!1.20e-17!39;UBERON:0001890!1.20e-17!39;UBERON:0006240!1.20e-17!39;UBERON:0002020!3.34e-17!34;UBERON:0000153!3.52e-15!94;UBERON:0002791!1.86e-14!29;UBERON:0003528!1.86e-14!29;UBERON:0001893!1.86e-14!29;UBERON:0007811!9.23e-14!86;UBERON:0000956!2.89e-10!21;UBERON:0001869!2.89e-10!21;UBERON:0000203!2.89e-10!21;UBERON:0002619!2.29e-08!17;UBERON:0002021!1.52e-07!10;UBERON:0000411!1.52e-07!10;UBERON:0001950!1.52e-07!10;UBERON:0000468!5.38e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.33e-33,95;UBERON:0000924,5.33e-33,95;UBERON:0006601,5.33e-33,95;UBERON:0001017,2.75e-31,73;UBERON:0001016,5.19e-31,75;UBERON:0010371,3.48e-29,73;UBERON:0002346,9.81e-29,64;UBERON:0003075,9.81e-29,64;UBERON:0007284,9.81e-29,64;UBERON:0000073,2.08e-26,54;UBERON:0001049,7.63e-25,52;UBERON:0005068,7.63e-25,52;UBERON:0006241,7.63e-25,52;UBERON:0007135,7.63e-25,52;UBERON:0003056,3.37e-22,49;UBERON:0000955,1.51e-21,47;UBERON:0006238,1.51e-21,47;UBERON:0002616,6.49e-21,46;UBERON:0010314,1.34e-20,92;UBERON:0003080,3.81e-19,40;UBERON:0002780,2.14e-18,39;UBERON:0001890,2.14e-18,39;UBERON:0006240,2.14e-18,39;UBERON:0002020,6.60e-18,34;UBERON:0003528,5.49e-15,29;UBERON:0002791,5.49e-15,29;UBERON:0001893,5.49e-15,29;UBERON:0000956,1.56e-10,21;UBERON:0001869,1.56e-10,21;UBERON:0000203,1.56e-10,21;UBERON:0002619,1.62e-08,17;UBERON:0002021,6.09e-08,10;UBERON:0000411,6.09e-08,10;UBERON:0001950,6.09e-08,10|phase1_expression=15.6945870162698,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0,0,0,0,0.157731082679119,0,0,29.0848052316659,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.709638518536602,0.183546752161682,0.782391344348039,3.48840250208714,2.19686182734472,0.388859798148567,3.63964696225943,2.87505128729943,0,0,0,0.257259436035947,0,0,12.9482534950143,8.99284664762456,13.3104594736298,1.69422266034566,2.66788438833342,0,0,0,4.79360176829448,4.2264013585371,12.5464430893258,10.9354810048669,9.25429829946081,101.977401432158,92.5439186587261,9.55428233876641,7.3801012684042,7.35375029288017,166.274980309077,193.446317199059,180.948496175855,8.83638127792299,10.4295913706747,9.89735404057844,214.412543233061,135.625789017635,150.506274060158,86.6208041292583,87.7009553722474,28.519115211271,1.59025005999687,3.32514864469856,0,0,0,0.539703191637817,0,0,6.03911006566533,0,0,0,5.21120653173718,0,0,0,0,0,0,5.36664234679582,0,14.398887489288,7.80683970447611,7.00270600117925,4.84292544237723,6.93324146542064,7.2904998424137,9.29932775839599,0,0.144599356919912,0,1.61766849947409,0.662524555381181,0.484875253135222,0,107.743333300249,125.039683967633,0.510914110417183,0,0,0,172.409025954951,116.205153115931,25.7591421831372,167.045171704778,138.597777873039,162.698038890136,128.332839086596,6.51771928642024,1.61729061793121,10.108910337347,10.1012090825508,6.11566081924707,4.36813998423599,5.58192602396583,5.72678307775717,8.300452896462,7.94305065766069,8.90166383317424,20.6962696591213,8.83828771024653,8.13156144721623,9.32540958068929,8.32943783224784,6.39508673218875,2.78601733217733,4.93877127379064,2.9855140022774,0,0,0,2.89976081549703,1.64168241986767,1.62055855314913,2.60419209143731,0.983821158737019,0.925602677324269,1.16266972375204,0,0.350296027101508,0.658239399653922,0.32833492815819,0.0810688095458557,0.146199987425332,0.219550115291051,0.536825675041487,113.556572224629,23.7709654596147,0,0.793351699990633,3.41261200856374,3.25131340604614,1.54640953586512,1.00841762311671,1.77902435075896,1.33157938278791,0,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14658 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P48168,E9PV81,E9Q9K1 | |||
|association_with_transcript=0bp_to_ENSMUST00000029654,ENSMUST00000132330,ENSMUST00000135043,NM_010298,uc008pog.1,uc008poh.1_5end | |||
|cluster_id=chr3:80717464..80717588,- | |||
|description=CAGE_peak_1_at_Glrb_5end | |||
|id=chr3:80717464..80717588,- | |||
|ontology_enrichment_celltype=CL:0000540!3.27e-13!33;CL:0000047!3.27e-13!33;CL:0000031!3.27e-13!33;CL:0000404!3.27e-13!33;CL:0000117!1.90e-12!23;CL:0000337!1.90e-12!23;CL:0000221!3.77e-12!44;CL:0000133!3.77e-12!44;CL:0002319!5.66e-12!43;CL:0000393!2.26e-09!39;CL:0000211!2.26e-09!39;CL:0000055!2.61e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.55e-14,33;CL:0000047,5.55e-14,33;CL:0000031,5.55e-14,33;CL:0000404,5.55e-14,33;CL:0000117,3.62e-13,23;CL:0000337,3.62e-13,23;CL:0000221,2.85e-12,44;CL:0000133,2.85e-12,44;CL:0002319,4.41e-12,43;CL:0000393,2.43e-09,39;CL:0000211,2.43e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.15e-35!102;UBERON:0000924!5.15e-35!102;UBERON:0006601!5.15e-35!102;UBERON:0002346!1.61e-30!71;UBERON:0003075!1.61e-30!71;UBERON:0007284!1.61e-30!71;UBERON:0001017!3.68e-30!73;UBERON:0005743!3.68e-30!73;UBERON:0000073!6.84e-30!75;UBERON:0001016!6.84e-30!75;UBERON:0000033!4.92e-26!63;UBERON:0001049!3.91e-24!52;UBERON:0005068!3.91e-24!52;UBERON:0006241!3.91e-24!52;UBERON:0007135!3.91e-24!52;UBERON:0000955!3.16e-23!50;UBERON:0006238!3.16e-23!50;UBERON:0002616!1.29e-22!49;UBERON:0003056!3.27e-21!49;UBERON:0003080!2.37e-18!40;UBERON:0002780!1.20e-17!39;UBERON:0001890!1.20e-17!39;UBERON:0006240!1.20e-17!39;UBERON:0002020!3.34e-17!34;UBERON:0000153!3.52e-15!94;UBERON:0002791!1.86e-14!29;UBERON:0003528!1.86e-14!29;UBERON:0001893!1.86e-14!29;UBERON:0007811!9.23e-14!86;UBERON:0000956!2.89e-10!21;UBERON:0001869!2.89e-10!21;UBERON:0000203!2.89e-10!21;UBERON:0002619!2.29e-08!17;UBERON:0002021!1.52e-07!10;UBERON:0000411!1.52e-07!10;UBERON:0001950!1.52e-07!10;UBERON:0000468!5.38e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,5.33e-33,95;UBERON:0000924,5.33e-33,95;UBERON:0006601,5.33e-33,95;UBERON:0001017,2.75e-31,73;UBERON:0001016,5.19e-31,75;UBERON:0010371,3.48e-29,73;UBERON:0002346,9.81e-29,64;UBERON:0003075,9.81e-29,64;UBERON:0007284,9.81e-29,64;UBERON:0000073,2.08e-26,54;UBERON:0001049,7.63e-25,52;UBERON:0005068,7.63e-25,52;UBERON:0006241,7.63e-25,52;UBERON:0007135,7.63e-25,52;UBERON:0003056,3.37e-22,49;UBERON:0000955,1.51e-21,47;UBERON:0006238,1.51e-21,47;UBERON:0002616,6.49e-21,46;UBERON:0010314,1.34e-20,92;UBERON:0003080,3.81e-19,40;UBERON:0002780,2.14e-18,39;UBERON:0001890,2.14e-18,39;UBERON:0006240,2.14e-18,39;UBERON:0002020,6.60e-18,34;UBERON:0003528,5.49e-15,29;UBERON:0002791,5.49e-15,29;UBERON:0001893,5.49e-15,29;UBERON:0000956,1.56e-10,21;UBERON:0001869,1.56e-10,21;UBERON:0000203,1.56e-10,21;UBERON:0002619,1.62e-08,17;UBERON:0002021,6.09e-08,10;UBERON:0000411,6.09e-08,10;UBERON:0001950,6.09e-08,10 | |||
|phase1_expression=15.6945870162698,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0,0,0,0,0.157731082679119,0,0,29.0848052316659,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377690453926732,0.709638518536602,0.183546752161682,0.782391344348039,3.48840250208714,2.19686182734472,0.388859798148567,3.63964696225943,2.87505128729943,0,0,0,0.257259436035947,0,0,12.9482534950143,8.99284664762456,13.3104594736298,1.69422266034566,2.66788438833342,0,0,0,4.79360176829448,4.2264013585371,12.5464430893258,10.9354810048669,9.25429829946081,101.977401432158,92.5439186587261,9.55428233876641,7.3801012684042,7.35375029288017,166.274980309077,193.446317199059,180.948496175855,8.83638127792299,10.4295913706747,9.89735404057844,214.412543233061,135.625789017635,150.506274060158,86.6208041292583,87.7009553722474,28.519115211271,1.59025005999687,3.32514864469856,0,0,0,0.539703191637817,0,0,6.03911006566533,0,0,0,5.21120653173718,0,0,0,0,0,0,5.36664234679582,0,14.398887489288,7.80683970447611,7.00270600117925,4.84292544237723,6.93324146542064,7.2904998424137,9.29932775839599,0,0.144599356919912,0,1.61766849947409,0.662524555381181,0.484875253135222,0,107.743333300249,125.039683967633,0.510914110417183,0,0,0,172.409025954951,116.205153115931,25.7591421831372,167.045171704778,138.597777873039,162.698038890136,128.332839086596,6.51771928642024,1.61729061793121,10.108910337347,10.1012090825508,6.11566081924707,4.36813998423599,5.58192602396583,5.72678307775717,8.300452896462,7.94305065766069,8.90166383317424,20.6962696591213,8.83828771024653,8.13156144721623,9.32540958068929,8.32943783224784,6.39508673218875,2.78601733217733,4.93877127379064,2.9855140022774,0,0,0,2.89976081549703,1.64168241986767,1.62055855314913,2.60419209143731,0.983821158737019,0.925602677324269,1.16266972375204,0,0.350296027101508,0.658239399653922,0.32833492815819,0.0810688095458557,0.146199987425332,0.219550115291051,0.536825675041487,113.556572224629,23.7709654596147,0,0.793351699990633,3.41261200856374,3.25131340604614,1.54640953586512,1.00841762311671,1.77902435075896,1.33157938278791,0,0.658795818896044,1.25667604400135,0.994782360205754,1.16978452271472,1.79763881730844,0.216138049874694,0.995706366271836,3.79335801906163,3.65595240351132,3.38123207019241,2.8511185898344,2.13347735884388,1.8936671370386,1.20149420536089,0.295220295959204,0.627994911365499,0.123397163921801,0,0.333690211432188,0,0,0,0.241177159752417,0,0,0,0,0,0,0,0,0.179397413521912,0,0.184753190166605,3.03186258832776,1.30371981153621,1.69745085775188,1.87752198630802,1.50755631697634,0.476087281772027,0,1.10344600874334,1.10732344824387,0.956728611944923,0,0.518054945597687,0,0,0,2.45882136509518,3.86311444826625,218.669903563373,213.676904657586,4.59017847054691,1.00988370881749,5.67914794949262,4.68526493155966,5.17016154558717,3.82350076724083,2.89638276307112,2.83076530788832,5.66734982344852,3.79932615284705,5.53402889125133,103.465463887822,3.26462195979018,4.98583690268315,10.2618784392753,11.0529982391599,1.32745138339963,1.69946445308487,1.209294227859,0,0.590603785761546,1.22974059177571,1.03371317267288,0,0.356497378384721,0.632073515871632,0,0,12.5962654128902,5.76195500900193,1.81102157295856,6.00143698088458,10.1083933176096,10.3453914209201,12.6702745863633,3.34911444026059,0.704015124191131,1.0591603543191,2.64634077665954,1.31909002353184,3.71368181400583,3.37752379597673,3.22305328808468,3.77524069413641,1.1659233465194,233.821305835253,0,1.23832120777933,0.185194527369712,0.188368457004691,0.136694227721025,0,0.339956859987711,0,0.138199973804424,0,2.53068794864908,1.42323626988794,1.51207477150522,0,0.655087691238533,0.944050424693745,1.07449492442937,1.30877970992015,1.42576470620972,1.24267862617385,0,0.897099276263873,0.66183396182839,1.55560950675238,0.645799117388655,1.01373675294467,1.87771581833206,1.5624526181274,0.943734099831398,0.241584120826006,0.288030006257865,0,1.82452693761148,2.15693010046137,2.07873316764472,1.61124026100733,1.19208812868759,1.56254084375959,0.886137163047463,0.403865799792591,0.304827226619999,0.100826185136841,0.0974578807397524,0.192423683280659,0.233753804363138,0.453460767230423,1.10992976687032,0.0897138566094757,0,1.9318959403219,1.12609485270709,7.69236821922513,5.14484109789758,0.501572104035363,138.364201441181,153.28830375689,122.599639876031,147.793736815571,154.828649468165,148.057203888381,132.304410045434,137.347966983387,153.615276645645,162.05897757832,2.69847103718859,4.38927360741134,5.80494259564056,4.37592090722929,2.93458427679175,4.59608771125035,5.11167473943715,5.15087643097235,5.45562656306086,5.30664144703975,5.0695859978048,6.41329560712659,6.74218853783153,6.4665403928918,6.71994986780675,10.4784612082276,5.44656331940821,5.59436739344745,5.76920261124629,4.85756436443511,2.74295401908332,4.43689515398344,7.15308569841963,3.48831399917588,4.98779716201252,4.73841804193388,3.84148743032822,6.31367307450823,4.34573164306758,3.36685362994643,5.69448086996036,5.71325997778268,4.50154147486658,7.43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| |||
|short_description=p1@Glrb | |||
}} |
Latest revision as of 17:45, 25 September 2015
Short description: | p1@Glrb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Glrb_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000029654, ENSMUST00000132330, ENSMUST00000135043, NM_010298, uc008pog.1, uc008poh.1_5end |
EntrezGene: | Glrb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.55e-14 | 33 |
neuronal stem cell | 5.55e-14 | 33 |
neuroblast | 5.55e-14 | 33 |
electrically signaling cell | 5.55e-14 | 33 |
CNS neuron (sensu Vertebrata) | 3.62e-13 | 23 |
neuroblast (sensu Vertebrata) | 3.62e-13 | 23 |
ectodermal cell | 2.85e-12 | 44 |
neurectodermal cell | 2.85e-12 | 44 |
neural cell | 4.41e-12 | 43 |
electrically responsive cell | 2.43e-09 | 39 |
electrically active cell | 2.43e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 5.33e-33 | 95 |
ectoderm | 5.33e-33 | 95 |
presumptive ectoderm | 5.33e-33 | 95 |
central nervous system | 2.75e-31 | 73 |
nervous system | 5.19e-31 | 75 |
ecto-epithelium | 3.48e-29 | 73 |
neurectoderm | 9.81e-29 | 64 |
neural plate | 9.81e-29 | 64 |
presumptive neural plate | 9.81e-29 | 64 |
regional part of nervous system | 2.08e-26 | 54 |
neural tube | 7.63e-25 | 52 |
neural rod | 7.63e-25 | 52 |
future spinal cord | 7.63e-25 | 52 |
neural keel | 7.63e-25 | 52 |
pre-chordal neural plate | 3.37e-22 | 49 |
brain | 1.51e-21 | 47 |
future brain | 1.51e-21 | 47 |
regional part of brain | 6.49e-21 | 46 |
structure with developmental contribution from neural crest | 1.34e-20 | 92 |
anterior neural tube | 3.81e-19 | 40 |
regional part of forebrain | 2.14e-18 | 39 |
forebrain | 2.14e-18 | 39 |
future forebrain | 2.14e-18 | 39 |
gray matter | 6.60e-18 | 34 |
brain grey matter | 5.49e-15 | 29 |
regional part of telencephalon | 5.49e-15 | 29 |
telencephalon | 5.49e-15 | 29 |
cerebral cortex | 1.56e-10 | 21 |
cerebral hemisphere | 1.56e-10 | 21 |
pallium | 1.56e-10 | 21 |
regional part of cerebral cortex | 1.62e-08 | 17 |
occipital lobe | 6.09e-08 | 10 |
visual cortex | 6.09e-08 | 10 |
neocortex | 6.09e-08 | 10 |