FFCP PHASE1:Mm9::chr11:78136622..78136647,+: Difference between revisions
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{{FFCP|EntrezGene=11676|HGNC=|MCL_coexpression_id=607|UniProt=|association_with_transcript=-22bp_to_ENSMUST00000148689_5end|description=CAGE_peak_2_at_Aldoc_5end|id=chr11:78136622..78136647,+|ontology_enrichment_celltype=CL:0000221!8.31e-14!44;CL:0000133!8.31e-14!44;CL:0002319!2.21e-13!43;CL:0000117!4.41e-12!23;CL:0000337!4.41e-12!23;CL:0000540!1.36e-10!33;CL:0000047!1.36e-10!33;CL:0000031!1.36e-10!33;CL:0000404!1.36e-10!33;CL:0000055!3.06e-09!50;CL:0002321!5.10e-07!70;CL:0000220!5.10e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,9.81e-14,44;CL:0000133,9.81e-14,44;CL:0002319,2.63e-13,43;CL:0000117,2.97e-12,23;CL:0000337,2.97e-12,23;CL:0000540,9.65e-11,33;CL:0000047,9.65e-11,33;CL:0000031,9.65e-11,33;CL:0000404,9.65e-11,33;CL:0002321,2.67e-07,70;CL:0000393,8.41e-07,39;CL:0000211,8.41e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.74e-30!73;UBERON:0005743!2.74e-30!73;UBERON:0000073!2.01e-28!75;UBERON:0001016!2.01e-28!75;UBERON:0004121!3.67e-26!102;UBERON:0000924!3.67e-26!102;UBERON:0006601!3.67e-26!102;UBERON:0001049!5.88e-25!52;UBERON:0005068!5.88e-25!52;UBERON:0006241!5.88e-25!52;UBERON:0007135!5.88e-25!52;UBERON:0000955!9.91e-24!50;UBERON:0006238!9.91e-24!50;UBERON:0000033!2.51e-23!63;UBERON:0002616!3.73e-23!49;UBERON:0002346!6.83e-22!71;UBERON:0003075!6.83e-22!71;UBERON:0007284!6.83e-22!71;UBERON:0002020!3.15e-18!34;UBERON:0003080!3.92e-17!40;UBERON:0003056!4.39e-17!49;UBERON:0002780!1.67e-16!39;UBERON:0001890!1.67e-16!39;UBERON:0006240!1.67e-16!39;UBERON:0002791!3.16e-15!29;UBERON:0003528!3.16e-15!29;UBERON:0001893!3.16e-15!29;UBERON:0000956!1.25e-11!21;UBERON:0001869!1.25e-11!21;UBERON:0000203!1.25e-11!21;UBERON:0002619!8.13e-10!17;UBERON:0003076!1.56e-08!12;UBERON:0003057!1.56e-08!12;UBERON:0007811!4.41e-08!86;UBERON:0000025!4.10e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.25e-30,73;UBERON:0001016,2.05e-28,75;UBERON:0004121,7.74e-28,95;UBERON:0000924,7.74e-28,95;UBERON:0006601,7.74e-28,95;UBERON:0000073,1.13e-26,54;UBERON:0001049,3.32e-25,52;UBERON:0005068,3.32e-25,52;UBERON:0006241,3.32e-25,52;UBERON:0007135,3.32e-25,52;UBERON:0010371,1.50e-24,73;UBERON:0002346,2.27e-24,64;UBERON:0003075,2.27e-24,64;UBERON:0007284,2.27e-24,64;UBERON:0000955,8.44e-22,47;UBERON:0006238,8.44e-22,47;UBERON:0002616,3.15e-21,46;UBERON:0002020,1.68e-18,34;UBERON:0003080,2.91e-17,40;UBERON:0003056,3.18e-17,49;UBERON:0002780,1.26e-16,39;UBERON:0001890,1.26e-16,39;UBERON:0006240,1.26e-16,39;UBERON:0003528,1.89e-15,29;UBERON:0002791,1.89e-15,29;UBERON:0001893,1.89e-15,29;UBERON:0010314,3.11e-14,92;UBERON:0000956,8.55e-12,21;UBERON:0001869,8.55e-12,21;UBERON:0000203,8.55e-12,21;UBERON:0002619,5.96e-10,17;UBERON:0003076,1.20e-08,12;UBERON:0003057,1.20e-08,12;UBERON:0000025,6.89e-07,114|phase1_expression=12.4916100741739,2.79180326111489,1.81999695755814,6.0492842261366,4.50806156951712,1.17515490338323,3.73780224952841,0.645616617207881,0.281577444303333,0.936258105287974,0,0,0.513602189793617,0.174840804837995,0,0.202475267389826,0,1.41957974411207,0.822686601634433,0,34.18740264073,0,0,7.67963629408352,4.35877634027623,2.8711598205751,5.59990595006797,4.74036711908956,3.6104449696711,1.00812051903972,2.66076612786366,0.635030673459631,3.69038872550742,0,1.1554064790051,1.82858109894342,2.85837098767317,0.418531630736908,0.7813353445238,0,0,0,0.485510353031154,0.251793635951155,0.202753862439029,0.367093504323363,21.9069576417451,263.374388907579,305.803166366385,327.031090242945,88.3314320456037,113.564525848328,0.838913030288682,1.45072428402269,0.336093799142464,0.257259436035947,0,2.57836046138721,16.589949790487,25.3915670050576,22.1840991227163,9.14880236586657,13.3394219416671,4.04954872776629,6.92206453796882,1.4209602298922,86.2848318293006,136.397498389152,37.8467084925943,51.9772862577009,40.172067618114,219.951257990929,212.033799313549,19.1085646775328,20.0317034428114,20.2228133054205,352.370819198044,181.060645404796,242.08389641184,7.38563211289086,14.2720724019759,9.89735404057844,301.796821920493,200.343489171278,210.861581931998,154.090750202728,130.697202973577,52.9374426143854,0.605809546665472,0.604572480854284,5.50742528533188,5.16254326188832,7.47968467078526,11.3337670243942,4.54843492213368,4.03224198387602,9.83110940922263,0,0,0,30.2813352519863,0,0,0,5.62876706629157,3.04031838570118,5.56076889516262,9.02052649780574,1.03575153458869,2.52351636410202,2.08182392119363,3.95805121805784,3.45923245884088,2.71300752994721,2.4693628498498,1.88499886994513,2.71914464507811,0.578397427679647,0,0.970601099684455,0.441683036920787,0,1.86391761218122,259.989347746254,256.153322432856,1.78819938646014,0.479260498023681,0,0,197.723644014366,106.59764045674,24.2512899577828,102.556348913443,89.5004100656157,190.126060771997,122.167671090021,1.32391173005411,4.47865094196335,14.1524744722858,22.3068367239662,1.04096354370163,1.37941262660084,2.88099407688559,4.37043971723574,8.91278138882395,10.3772113430728,13.3056448874815,4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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11676 | |||
|HGNC= | |||
|MCL_coexpression_id=607 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-22bp_to_ENSMUST00000148689_5end | |||
|cluster_id=chr11:78136622..78136647,+ | |||
|description=CAGE_peak_2_at_Aldoc_5end | |||
|id=chr11:78136622..78136647,+ | |||
|ontology_enrichment_celltype=CL:0000221!8.31e-14!44;CL:0000133!8.31e-14!44;CL:0002319!2.21e-13!43;CL:0000117!4.41e-12!23;CL:0000337!4.41e-12!23;CL:0000540!1.36e-10!33;CL:0000047!1.36e-10!33;CL:0000031!1.36e-10!33;CL:0000404!1.36e-10!33;CL:0000055!3.06e-09!50;CL:0002321!5.10e-07!70;CL:0000220!5.10e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.81e-14,44;CL:0000133,9.81e-14,44;CL:0002319,2.63e-13,43;CL:0000117,2.97e-12,23;CL:0000337,2.97e-12,23;CL:0000540,9.65e-11,33;CL:0000047,9.65e-11,33;CL:0000031,9.65e-11,33;CL:0000404,9.65e-11,33;CL:0002321,2.67e-07,70;CL:0000393,8.41e-07,39;CL:0000211,8.41e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.74e-30!73;UBERON:0005743!2.74e-30!73;UBERON:0000073!2.01e-28!75;UBERON:0001016!2.01e-28!75;UBERON:0004121!3.67e-26!102;UBERON:0000924!3.67e-26!102;UBERON:0006601!3.67e-26!102;UBERON:0001049!5.88e-25!52;UBERON:0005068!5.88e-25!52;UBERON:0006241!5.88e-25!52;UBERON:0007135!5.88e-25!52;UBERON:0000955!9.91e-24!50;UBERON:0006238!9.91e-24!50;UBERON:0000033!2.51e-23!63;UBERON:0002616!3.73e-23!49;UBERON:0002346!6.83e-22!71;UBERON:0003075!6.83e-22!71;UBERON:0007284!6.83e-22!71;UBERON:0002020!3.15e-18!34;UBERON:0003080!3.92e-17!40;UBERON:0003056!4.39e-17!49;UBERON:0002780!1.67e-16!39;UBERON:0001890!1.67e-16!39;UBERON:0006240!1.67e-16!39;UBERON:0002791!3.16e-15!29;UBERON:0003528!3.16e-15!29;UBERON:0001893!3.16e-15!29;UBERON:0000956!1.25e-11!21;UBERON:0001869!1.25e-11!21;UBERON:0000203!1.25e-11!21;UBERON:0002619!8.13e-10!17;UBERON:0003076!1.56e-08!12;UBERON:0003057!1.56e-08!12;UBERON:0007811!4.41e-08!86;UBERON:0000025!4.10e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.25e-30,73;UBERON:0001016,2.05e-28,75;UBERON:0004121,7.74e-28,95;UBERON:0000924,7.74e-28,95;UBERON:0006601,7.74e-28,95;UBERON:0000073,1.13e-26,54;UBERON:0001049,3.32e-25,52;UBERON:0005068,3.32e-25,52;UBERON:0006241,3.32e-25,52;UBERON:0007135,3.32e-25,52;UBERON:0010371,1.50e-24,73;UBERON:0002346,2.27e-24,64;UBERON:0003075,2.27e-24,64;UBERON:0007284,2.27e-24,64;UBERON:0000955,8.44e-22,47;UBERON:0006238,8.44e-22,47;UBERON:0002616,3.15e-21,46;UBERON:0002020,1.68e-18,34;UBERON:0003080,2.91e-17,40;UBERON:0003056,3.18e-17,49;UBERON:0002780,1.26e-16,39;UBERON:0001890,1.26e-16,39;UBERON:0006240,1.26e-16,39;UBERON:0003528,1.89e-15,29;UBERON:0002791,1.89e-15,29;UBERON:0001893,1.89e-15,29;UBERON:0010314,3.11e-14,92;UBERON:0000956,8.55e-12,21;UBERON:0001869,8.55e-12,21;UBERON:0000203,8.55e-12,21;UBERON:0002619,5.96e-10,17;UBERON:0003076,1.20e-08,12;UBERON:0003057,1.20e-08,12;UBERON:0000025,6.89e-07,114 | |||
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| |||
|short_description=p2@Aldoc | |||
}} |
Latest revision as of 17:53, 25 September 2015
Short description: | p2@Aldoc |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Aldoc_5end |
Coexpression cluster: | MCL_coexpression_mm9:607 |
Association with transcript: | -22bp_to_ENSMUST00000148689_5end |
EntrezGene: | Aldoc |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.81e-14 | 44 |
neurectodermal cell | 9.81e-14 | 44 |
neural cell | 2.63e-13 | 43 |
CNS neuron (sensu Vertebrata) | 2.97e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.97e-12 | 23 |
neuron | 9.65e-11 | 33 |
neuronal stem cell | 9.65e-11 | 33 |
neuroblast | 9.65e-11 | 33 |
electrically signaling cell | 9.65e-11 | 33 |
embryonic cell | 2.67e-07 | 70 |
electrically responsive cell | 8.41e-07 | 39 |
electrically active cell | 8.41e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.25e-30 | 73 |
nervous system | 2.05e-28 | 75 |
ectoderm-derived structure | 7.74e-28 | 95 |
ectoderm | 7.74e-28 | 95 |
presumptive ectoderm | 7.74e-28 | 95 |
regional part of nervous system | 1.13e-26 | 54 |
neural tube | 3.32e-25 | 52 |
neural rod | 3.32e-25 | 52 |
future spinal cord | 3.32e-25 | 52 |
neural keel | 3.32e-25 | 52 |
ecto-epithelium | 1.50e-24 | 73 |
neurectoderm | 2.27e-24 | 64 |
neural plate | 2.27e-24 | 64 |
presumptive neural plate | 2.27e-24 | 64 |
brain | 8.44e-22 | 47 |
future brain | 8.44e-22 | 47 |
regional part of brain | 3.15e-21 | 46 |
gray matter | 1.68e-18 | 34 |
anterior neural tube | 2.91e-17 | 40 |
pre-chordal neural plate | 3.18e-17 | 49 |
regional part of forebrain | 1.26e-16 | 39 |
forebrain | 1.26e-16 | 39 |
future forebrain | 1.26e-16 | 39 |
brain grey matter | 1.89e-15 | 29 |
regional part of telencephalon | 1.89e-15 | 29 |
telencephalon | 1.89e-15 | 29 |
structure with developmental contribution from neural crest | 3.11e-14 | 92 |
cerebral cortex | 8.55e-12 | 21 |
cerebral hemisphere | 8.55e-12 | 21 |
pallium | 8.55e-12 | 21 |
regional part of cerebral cortex | 5.96e-10 | 17 |
posterior neural tube | 1.20e-08 | 12 |
chordal neural plate | 1.20e-08 | 12 |
tube | 6.89e-07 | 114 |