FFCP PHASE1:Mm9::chr14:34260328..34260365,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:34260328..34260365,-
|short_description=p1@Mapk8
|description=CAGE_peak_1_at_Mapk8_5end
|association_with_transcript=0bp_to_ENSMUST00000022504,ENSMUST0000...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=26419 | |EntrezGene=26419 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=G3X8U9,Q7TSJ7,Q91Y86,Q544A0,Q3TQZ7,Q80W81,Q78GB8 | |UniProt=G3X8U9,Q7TSJ7,Q91Y86,Q544A0,Q3TQZ7,Q80W81,Q78GB8 | ||
|association_with_transcript=0bp_to_ENSMUST00000022504,ENSMUST00000111944,ENSMUST00000111945,ENSMUST00000130539,ENSMUST00000132379,NM_016700,uc007szq.2,uc007szr.2,uc007szt.2,uc007szu.2,uc007szv.2_5end | |||
|cluster_id=chr14:34260328..34260365,- | |||
|description=CAGE_peak_1_at_Mapk8_5end | |||
|id=chr14:34260328..34260365,- | |||
|ontology_enrichment_celltype=CL:0000540!3.12e-16!33;CL:0000047!3.12e-16!33;CL:0000031!3.12e-16!33;CL:0000404!3.12e-16!33;CL:0000117!2.10e-13!23;CL:0000337!2.10e-13!23;CL:0000393!8.93e-11!39;CL:0000211!8.93e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.12e-16,33;CL:0000047,3.12e-16,33;CL:0000031,3.12e-16,33;CL:0000404,3.12e-16,33;CL:0000117,2.10e-13,23;CL:0000337,2.10e-13,23;CL:0000393,8.93e-11,39;CL:0000211,8.93e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!8.54e-17!34;UBERON:0001017!2.12e-16!73;UBERON:0005743!2.12e-16!73;UBERON:0000073!7.11e-15!75;UBERON:0001016!7.11e-15!75;UBERON:0002791!2.77e-14!29;UBERON:0003528!2.77e-14!29;UBERON:0001893!2.77e-14!29;UBERON:0001049!3.01e-13!52;UBERON:0005068!3.01e-13!52;UBERON:0006241!3.01e-13!52;UBERON:0007135!3.01e-13!52;UBERON:0000033!7.01e-13!63;UBERON:0000955!1.23e-12!50;UBERON:0006238!1.23e-12!50;UBERON:0003056!1.78e-12!49;UBERON:0002346!3.30e-12!71;UBERON:0003075!3.30e-12!71;UBERON:0007284!3.30e-12!71;UBERON:0002616!4.30e-12!49;UBERON:0003080!4.64e-11!40;UBERON:0002780!1.19e-10!39;UBERON:0001890!1.19e-10!39;UBERON:0006240!1.19e-10!39;UBERON:0004121!2.13e-10!102;UBERON:0000924!2.13e-10!102;UBERON:0006601!2.13e-10!102;UBERON:0000956!3.36e-10!21;UBERON:0001869!3.36e-10!21;UBERON:0000203!3.36e-10!21;UBERON:0007811!4.41e-09!86;UBERON:0000153!5.80e-09!94;UBERON:0002021!4.84e-08!10;UBERON:0000411!4.84e-08!10;UBERON:0001950!4.84e-08!10;UBERON:0002619!7.66e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.54e-17,34;UBERON:0001017,2.12e-16,73;UBERON:0002346,3.83e-16,64;UBERON:0003075,3.83e-16,64;UBERON:0007284,3.83e-16,64;UBERON:0001016,7.11e-15,75;UBERON:0000073,1.83e-14,54;UBERON:0003528,2.77e-14,29;UBERON:0002791,2.77e-14,29;UBERON:0001893,2.77e-14,29;UBERON:0010371,2.85e-13,73;UBERON:0001049,3.01e-13,52;UBERON:0005068,3.01e-13,52;UBERON:0006241,3.01e-13,52;UBERON:0007135,3.01e-13,52;UBERON:0004121,3.63e-13,95;UBERON:0000924,3.63e-13,95;UBERON:0006601,3.63e-13,95;UBERON:0003056,1.78e-12,49;UBERON:0000955,3.52e-11,47;UBERON:0006238,3.52e-11,47;UBERON:0003080,4.64e-11,40;UBERON:0002616,1.18e-10,46;UBERON:0002780,1.19e-10,39;UBERON:0001890,1.19e-10,39;UBERON:0006240,1.19e-10,39;UBERON:0010314,2.54e-10,92;UBERON:0000956,3.36e-10,21;UBERON:0001869,3.36e-10,21;UBERON:0000203,3.36e-10,21;UBERON:0002021,4.84e-08,10;UBERON:0000411,4.84e-08,10;UBERON:0001950,4.84e-08,10;UBERON:0002619,7.66e-08,17 | |||
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|phase1_expression=36.3537882927882,78.5194667188562,58.2399026418606,69.8692328118777,68.1218192727032,34.7510092857612,24.5293272625302,24.4043081304579,49.2760527530834,44.4722600011788,31.3328881852674,28.2393442843491,27.7345182488553,26.8380635426322,20.3196954707554,17.0079224607454,12.5921138063066,21.293696161681,24.8177124826387,22.4926515452956,34.6126190914854,20.2553540449806,27.1647780704493,30.0785754851605,30.7408436630008,37.8993096315913,38.7685796543167,40.9395342103189,22.8028103347649,27.9753444033523,27.4945833212578,32.3865643464412,28.9080450164748,0,14.731432607315,16.9559338265662,18.3752420636132,8.37063261473815,14.0640362014284,17.2762835511353,9.41170380849623,8.87959130445979,16.0218416500281,16.6183799727762,18.5519784131712,24.228171285342,12.5182615095686,8.50298109883741,6.37089929929968,9.13820525649132,8.25919887589639,2.87505128729943,32.5498255752009,40.6202799526353,43.0200062902354,22.8960898071993,17.4785398362642,23.7209162447623,71.417710683438,79.3486468908049,74.7921056137291,6.77689064138264,8.89294796111139,6.29929802096979,1.97773272513395,5.6838409195688,5.39280198933128,6.14749288514487,115.199159274719,82.3536223823313,93.1739578786622,48.2750163642428,45.0571823541292,96.1552773837389,76.9639132276438,89.164222301172,58.361416929676,77.2508395415386,72.8094967634594,83.0883612700221,79.2282993596868,97.9317136646709,50.2529398202486,52.8996853429779,56.9937464207502,80.7282324197849,77.0230793123147,115.754055857512,18.4014649799637,16.8524579038132,49.5668275679869,18.9293252935905,40.798280022465,26.9851595818909,26.6408331153544,38.5303122903709,28.2293284464821,17.0430322578058,11.6903702071291,15.9002808529653,24.225068201589,39.7812079984385,56.0571527354621,21.3320010945999,41.1332977921307,40.2842186105407,47.5192978313896,31.2863830430224,37.2870552451927,20.6334573300106,22.2061218260654,17.0500667854799,21.4472412448134,20.4982791151567,30.5730638552832,21.7403203000339,24.7194967734374,24.2926919625452,17.6922110389975,32.8386705393241,21.863310327579,23.2740121504907,18.6391761218122,53.8716666501247,43.9838084308256,33.2094171771169,47.8062346778622,26.9956228947033,35.325523126312,52.5765144310928,48.4950638987744,107.811434112838,90.562470820176,75.1803444551172,54.6482557191643,59.0558197566638,41.2449423593781,22.3932547098167,29.8212854951736,32.408045806517,34.3517969421538,37.933847231523,44.2952839321159,33.9085840130359,46.1287464246003,44.8398020996974,43.5713019202739,48.1188269574569,28.2394070742023,42.1706558774237,35.5421270811177,30.2490110750053,28.9169139194622,34.4769644856945,26.9574598694406,35.8261680273288,20.3641824320838,25.4774428043568,24.1538974486254,27.9619792922928,25.7978665979206,30.6105504483725,35.2749656021963,28.9243420668684,31.4704910290252,33.7174219888091,30.0466209567573,39.7002164048376,41.4690821781971,42.0268708042484,41.1018864397489,35.0879969820798,35.3475685618592,31.6727148274477,69.8162629232902,132.129522295001,67.075012945711,36.4941781995691,29.4337785738623,39.712470888135,34.4076121729989,28.0340099226446,23.7944506914011,25.4902338990829,28.4717436926707,25.3636390274977,21.6148279568232,24.4716460610616,26.5151158482003,31.4586793028978,34.1498118802017,34.6505815462599,36.2265690820386,33.5890627072603,37.1935527721165,32.9915151109409,28.8989205879762,35.9095397838431,36.613954994945,23.0271830848179,25.11979645462,21.8412980141587,19.862326014839,21.6898637430922,19.2627815210939,20.2375901146368,20.4888722602388,19.0529956204409,14.5136735515409,18.9879450717535,20.2669033468794,15.9245619649087,25.8782771749238,25.6777253891267,26.8352398878522,30.5620442316005,21.7070870361514,22.1924019827149,24.3874211019918,29.9396430597366,34.5485750057095,29.0264096675572,29.8056615326398,32.3287076862704,32.6119788013839,31.8067846008212,41.1427726117158,37.8704619299405,43.3716970748365,22.9408640602033,25.5573773161525,25.0242871346015,18.0949540727127,22.3001330365671,20.1623351937805,30.0771053472158,52.0183911560446,46.0641928307358,12.622990794004,30.5489821917291,53.0053808619311,52.7092304800462,53.4250026377341,36.5622260867405,41.6633520534077,48.972239826468,46.9580413942877,48.8067282711891,53.7591378007272,84.5075062189352,32.3623394274852,19.5872164033981,42.6763833506369,36.9533075458479,31.8588332015911,19.6652315285535,19.3487076457441,21.1237689326606,13.2885851796348,26.1319875752338,24.0338312646446,28.7191646287229,25.6678112436999,24.3348303610578,17.9211634577498,25.7838858120467,23.8307724027652,32.0508747375732,17.5927809944546,31.9362182197073,32.8079432238206,26.7553226403106,27.8087844817584,18.267896946876,27.9259332595815,25.2080164327946,31.9766177179695,25.8871417118124,36.8138892866665,33.0514828606294,21.845138952574,21.502457866603,29.1480836629851,43.7603712744803,15.8909919142003,27.4494534391086,25.9272338317596,18.0833718724503,18.7271091977804,13.9554685655979,41.6447153484946,41.2856784354791,38.8341926390431,6.68269432610579,32.1081033484852,34.157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| ||
|short_description=p1@Mapk8 | |||
}} | }} |
Latest revision as of 22:05, 25 September 2015
Short description: | p1@Mapk8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Mapk8_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000022504, ENSMUST00000111944, ENSMUST00000111945, ENSMUST00000130539, ENSMUST00000132379, NM_016700, uc007szq.2, uc007szr.2, uc007szt.2, uc007szu.2, uc007szv.2_5end |
EntrezGene: | Mapk8 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.12e-16 | 33 |
neuronal stem cell | 3.12e-16 | 33 |
neuroblast | 3.12e-16 | 33 |
electrically signaling cell | 3.12e-16 | 33 |
CNS neuron (sensu Vertebrata) | 2.10e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.10e-13 | 23 |
electrically responsive cell | 8.93e-11 | 39 |
electrically active cell | 8.93e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
gray matter | 8.54e-17 | 34 |
central nervous system | 2.12e-16 | 73 |
neurectoderm | 3.83e-16 | 64 |
neural plate | 3.83e-16 | 64 |
presumptive neural plate | 3.83e-16 | 64 |
nervous system | 7.11e-15 | 75 |
regional part of nervous system | 1.83e-14 | 54 |
brain grey matter | 2.77e-14 | 29 |
regional part of telencephalon | 2.77e-14 | 29 |
telencephalon | 2.77e-14 | 29 |
ecto-epithelium | 2.85e-13 | 73 |
neural tube | 3.01e-13 | 52 |
neural rod | 3.01e-13 | 52 |
future spinal cord | 3.01e-13 | 52 |
neural keel | 3.01e-13 | 52 |
ectoderm-derived structure | 3.63e-13 | 95 |
ectoderm | 3.63e-13 | 95 |
presumptive ectoderm | 3.63e-13 | 95 |
pre-chordal neural plate | 1.78e-12 | 49 |
brain | 3.52e-11 | 47 |
future brain | 3.52e-11 | 47 |
anterior neural tube | 4.64e-11 | 40 |
regional part of brain | 1.18e-10 | 46 |
regional part of forebrain | 1.19e-10 | 39 |
forebrain | 1.19e-10 | 39 |
future forebrain | 1.19e-10 | 39 |
structure with developmental contribution from neural crest | 2.54e-10 | 92 |
cerebral cortex | 3.36e-10 | 21 |
cerebral hemisphere | 3.36e-10 | 21 |
pallium | 3.36e-10 | 21 |
occipital lobe | 4.84e-08 | 10 |
visual cortex | 4.84e-08 | 10 |
neocortex | 4.84e-08 | 10 |
regional part of cerebral cortex | 7.66e-08 | 17 |