FFCP PHASE1:Mm9::chr9:106588199..106588221,-: Difference between revisions
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{{FFCP|EntrezGene=21767|HGNC=|MCL_coexpression_id=3536|UniProt=Q3TXY2|association_with_transcript=43bp_to_ENSMUST00000169068,uc009rkm.1_5end|description=CAGE_peak_3_at_Tex264_5end|id=chr9:106588199..106588221,-|ontology_enrichment_celltype=CL:0000055!8.69e-12!50;CL:0002319!3.36e-09!43;CL:0000221!5.38e-09!44;CL:0000133!5.38e-09!44|ontology_enrichment_celltype_v019_2=CL:0002319,3.34e-09,43;CL:0000221,5.35e-09,44;CL:0000133,5.35e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!3.95e-18!102;UBERON:0000924!3.95e-18!102;UBERON:0006601!3.95e-18!102;UBERON:0000073!6.30e-17!75;UBERON:0001016!6.30e-17!75;UBERON:0001017!3.35e-16!73;UBERON:0005743!3.35e-16!73;UBERON:0001049!7.75e-13!52;UBERON:0005068!7.75e-13!52;UBERON:0006241!7.75e-13!52;UBERON:0007135!7.75e-13!52;UBERON:0000955!1.21e-11!50;UBERON:0006238!1.21e-11!50;UBERON:0000033!1.45e-11!63;UBERON:0002020!2.22e-11!34;UBERON:0002346!3.88e-11!71;UBERON:0003075!3.88e-11!71;UBERON:0007284!3.88e-11!71;UBERON:0002616!3.89e-11!49;UBERON:0003056!4.78e-09!49;UBERON:0002791!6.81e-09!29;UBERON:0003528!6.81e-09!29;UBERON:0001893!6.81e-09!29;UBERON:0003080!8.46e-09!40;UBERON:0002780!1.06e-08!39;UBERON:0001890!1.06e-08!39;UBERON:0006240!1.06e-08!39;UBERON:0004111!1.13e-07!122;UBERON:0002619!1.77e-07!17;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21;UBERON:0000025!6.24e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.54e-18,95;UBERON:0000924,1.54e-18,95;UBERON:0006601,1.54e-18,95;UBERON:0001016,6.22e-17,75;UBERON:0001017,3.31e-16,73;UBERON:0000073,1.32e-13,54;UBERON:0001049,7.68e-13,52;UBERON:0005068,7.68e-13,52;UBERON:0006241,7.68e-13,52;UBERON:0007135,7.68e-13,52;UBERON:0010371,1.10e-11,73;UBERON:0002346,1.33e-11,64;UBERON:0003075,1.33e-11,64;UBERON:0007284,1.33e-11,64;UBERON:0002020,2.21e-11,34;UBERON:0000955,1.10e-10,47;UBERON:0006238,1.10e-10,47;UBERON:0002616,3.45e-10,46;UBERON:0003056,4.75e-09,49;UBERON:0003528,6.77e-09,29;UBERON:0002791,6.77e-09,29;UBERON:0001893,6.77e-09,29;UBERON:0003080,8.42e-09,40;UBERON:0002780,1.05e-08,39;UBERON:0001890,1.05e-08,39;UBERON:0006240,1.05e-08,39;UBERON:0010314,2.93e-08,92;UBERON:0004111,1.12e-07,122;UBERON:0002619,1.76e-07,17;UBERON:0000956,4.50e-07,21;UBERON:0001869,4.50e-07,21;UBERON:0000203,4.50e-07,21;UBERON:0000025,6.21e-07,114|phase1_expression=3.52327463630547,0.348975407639361,0.454999239389536,0.60492842261366,1.00179145989269,1.17515490338323,0.700837921786577,2.1950964985068,3.66050677594334,1.40438715793196,0.856089841127525,0.797721589953364,4.96482116800497,3.75907730401689,1.33243904726265,2.22722794128809,0,1.41957974411207,1.7824876368746,2.97072756258621,5.86798702042381,3.77305614563364,4.17919662622297,0.95995453676044,0.68822784320151,1.14846392823004,0.430761996159075,0.215471232685889,0.950117097281869,0.756090389279792,0.443461021310609,1.90509202037889,1.23012957516914,0,3.46621943701529,1.32987716286794,2.6542016314108,0,0,0.523523743973798,0.588231488031014,0.683045484958446,0,8.18329316841252,8.21153142878068,5.13930906052708,32.0780451182696,9.59310688073965,25.4835971971987,18.2764105129826,6.01941612989059,14.3752564364972,2.01339127269284,2.17608642603403,4.36921938885203,9.26133969729409,7.16333599846892,5.67239301505187,4.65327859977075,6.34789175126439,6.33831403506179,7.79342423759004,6.22506357277798,17.5480444869873,12.8552627133707,24.8668040231135,17.0772062995491,25.7426264565442,4.35496371695606,4.18518408828241,3.36519938162211,8.56952953211411,9.718215801871,4.40966877173835,3.83381884072945,5.51531271966013,5.50579404996943,7.02280359468532,7.52672012955593,8.04506355154182,7.22752384459036,5.73004707612436,6.97957497503452,3.37657566019008,7.94550888439413,7.36571463684169,9.5389026135399,9.13357284543973,6.81535739998656,6.57472572929034,7.24661221754194,9.46466264679525,6.79971333707751,6.47643829965381,3.89865850468601,6.72040330646003,6.03911006566533,5.11290967734173,4.67614808285164,5.65343319216544,3.80277233397037,2.56652954828636,5.09610479413291,0,3.68034769719064,4.05375784760158,2.52762222507392,4.79572294820052,4.14300613835475,4.15637989381509,2.94925055502431,3.95805121805784,4.15107895060905,4.37095657602605,4.9387256996996,5.27799683584637,10.8765785803125,6.50697106139602,1.76922110389975,4.36770494858005,2.87093973998512,2.90925151881133,0,4.39171195517321,5.02672096352292,2.04365644166873,2.15667224110656,1.79970819298022,1.52484272487678,5.09288173976397,6.8625090422794,5.27748278874031,9.03886464999838,9.97290283588289,8.3115217823824,10.2211995732687,4.17541391786297,2.48813941220186,4.54900965180614,9.04899980311838,2.73252930221678,4.82794419310293,4.14142898552303,5.57607825992146,4.35433594568498,3.20284300712124,5.34099829990454,7.50239775143145,3.66465587985832,4.53854592402766,4.92663147659057,5.47989331068937,5.00485048606076,8.70630416305416,6.58502836505419,4.97585667046233,0.702213187313235,1.02939162845886,0.852490498186778,4.55676699578104,2.5797866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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21767 | |||
|HGNC= | |||
|MCL_coexpression_id=3536 | |||
|TSSclassifier=NA | |||
|UniProt=Q3TXY2 | |||
|association_with_transcript=43bp_to_ENSMUST00000169068,uc009rkm.1_5end | |||
|cluster_id=chr9:106588199..106588221,- | |||
|description=CAGE_peak_3_at_Tex264_5end | |||
|id=chr9:106588199..106588221,- | |||
|ontology_enrichment_celltype=CL:0000055!8.69e-12!50;CL:0002319!3.36e-09!43;CL:0000221!5.38e-09!44;CL:0000133!5.38e-09!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.34e-09,43;CL:0000221,5.35e-09,44;CL:0000133,5.35e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.95e-18!102;UBERON:0000924!3.95e-18!102;UBERON:0006601!3.95e-18!102;UBERON:0000073!6.30e-17!75;UBERON:0001016!6.30e-17!75;UBERON:0001017!3.35e-16!73;UBERON:0005743!3.35e-16!73;UBERON:0001049!7.75e-13!52;UBERON:0005068!7.75e-13!52;UBERON:0006241!7.75e-13!52;UBERON:0007135!7.75e-13!52;UBERON:0000955!1.21e-11!50;UBERON:0006238!1.21e-11!50;UBERON:0000033!1.45e-11!63;UBERON:0002020!2.22e-11!34;UBERON:0002346!3.88e-11!71;UBERON:0003075!3.88e-11!71;UBERON:0007284!3.88e-11!71;UBERON:0002616!3.89e-11!49;UBERON:0003056!4.78e-09!49;UBERON:0002791!6.81e-09!29;UBERON:0003528!6.81e-09!29;UBERON:0001893!6.81e-09!29;UBERON:0003080!8.46e-09!40;UBERON:0002780!1.06e-08!39;UBERON:0001890!1.06e-08!39;UBERON:0006240!1.06e-08!39;UBERON:0004111!1.13e-07!122;UBERON:0002619!1.77e-07!17;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21;UBERON:0000025!6.24e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.54e-18,95;UBERON:0000924,1.54e-18,95;UBERON:0006601,1.54e-18,95;UBERON:0001016,6.22e-17,75;UBERON:0001017,3.31e-16,73;UBERON:0000073,1.32e-13,54;UBERON:0001049,7.68e-13,52;UBERON:0005068,7.68e-13,52;UBERON:0006241,7.68e-13,52;UBERON:0007135,7.68e-13,52;UBERON:0010371,1.10e-11,73;UBERON:0002346,1.33e-11,64;UBERON:0003075,1.33e-11,64;UBERON:0007284,1.33e-11,64;UBERON:0002020,2.21e-11,34;UBERON:0000955,1.10e-10,47;UBERON:0006238,1.10e-10,47;UBERON:0002616,3.45e-10,46;UBERON:0003056,4.75e-09,49;UBERON:0003528,6.77e-09,29;UBERON:0002791,6.77e-09,29;UBERON:0001893,6.77e-09,29;UBERON:0003080,8.42e-09,40;UBERON:0002780,1.05e-08,39;UBERON:0001890,1.05e-08,39;UBERON:0006240,1.05e-08,39;UBERON:0010314,2.93e-08,92;UBERON:0004111,1.12e-07,122;UBERON:0002619,1.76e-07,17;UBERON:0000956,4.50e-07,21;UBERON:0001869,4.50e-07,21;UBERON:0000203,4.50e-07,21;UBERON:0000025,6.21e-07,114 | |||
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| |||
|short_description=p3@Tex264 | |||
}} |
Latest revision as of 03:06, 26 September 2015
Short description: | p3@Tex264 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tex264_5end |
Coexpression cluster: | MCL_coexpression_mm9:3536 |
Association with transcript: | 43bp_to_ENSMUST00000169068, uc009rkm.1_5end |
EntrezGene: | Tex264 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.34e-09 | 43 |
ectodermal cell | 5.35e-09 | 44 |
neurectodermal cell | 5.35e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.54e-18 | 95 |
ectoderm | 1.54e-18 | 95 |
presumptive ectoderm | 1.54e-18 | 95 |
nervous system | 6.22e-17 | 75 |
central nervous system | 3.31e-16 | 73 |
regional part of nervous system | 1.32e-13 | 54 |
neural tube | 7.68e-13 | 52 |
neural rod | 7.68e-13 | 52 |
future spinal cord | 7.68e-13 | 52 |
neural keel | 7.68e-13 | 52 |
ecto-epithelium | 1.10e-11 | 73 |
neurectoderm | 1.33e-11 | 64 |
neural plate | 1.33e-11 | 64 |
presumptive neural plate | 1.33e-11 | 64 |
gray matter | 2.21e-11 | 34 |
brain | 1.10e-10 | 47 |
future brain | 1.10e-10 | 47 |
regional part of brain | 3.45e-10 | 46 |
pre-chordal neural plate | 4.75e-09 | 49 |
brain grey matter | 6.77e-09 | 29 |
regional part of telencephalon | 6.77e-09 | 29 |
telencephalon | 6.77e-09 | 29 |
anterior neural tube | 8.42e-09 | 40 |
regional part of forebrain | 1.05e-08 | 39 |
forebrain | 1.05e-08 | 39 |
future forebrain | 1.05e-08 | 39 |
structure with developmental contribution from neural crest | 2.93e-08 | 92 |
anatomical conduit | 1.12e-07 | 122 |
regional part of cerebral cortex | 1.76e-07 | 17 |
cerebral cortex | 4.50e-07 | 21 |
cerebral hemisphere | 4.50e-07 | 21 |
pallium | 4.50e-07 | 21 |
tube | 6.21e-07 | 114 |