FFCP PHASE1:Mm9::chr5:67009875..67009950,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11787 | |EntrezGene=11787 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=780 | |||
|TSSclassifier=NA | |||
|UniProt=E9QPX0,E0CYY8,Q9DBR4,Q3TIZ5,E0CYJ4,P70415 | |UniProt=E9QPX0,E0CYY8,Q9DBR4,Q3TIZ5,E0CYJ4,P70415 | ||
|association_with_transcript=0bp_to_ENSMUST00000087256,ENSMUST00000159847,ENSMUST00000160103,ENSMUST00000160185,ENSMUST00000160870,ENSMUST00000161936,ENSMUST00000162349,ENSMUST00000162382,ENSMUST00000162401,NM_009686_5end | |association_with_transcript=0bp_to_ENSMUST00000087256,ENSMUST00000159847,ENSMUST00000160103,ENSMUST00000160185,ENSMUST00000160870,ENSMUST00000161936,ENSMUST00000162349,ENSMUST00000162382,ENSMUST00000162401,NM_009686_5end | ||
|cluster_id=chr5:67009875..67009950,- | |||
|description=CAGE_peak_1_at_Apbb2_5end | |description=CAGE_peak_1_at_Apbb2_5end | ||
|id=chr5:67009875..67009950,- | |id=chr5:67009875..67009950,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!3.41e-13!333;UBERON:0004121!1.12e-10!102;UBERON:0000924!1.12e-10!102;UBERON:0006601!1.12e-10!102;UBERON:0002346!2.94e-10!71;UBERON:0003075!2.94e-10!71;UBERON:0007284!2.94e-10!71;UBERON:0000922!1.00e-09!328;UBERON:0000073!1.31e-09!75;UBERON:0001016!1.31e-09!75;UBERON:0001017!1.32e-09!73;UBERON:0005743!1.32e-09!73;UBERON:0001049!2.05e-09!52;UBERON:0005068!2.05e-09!52;UBERON:0006241!2.05e-09!52;UBERON:0007135!2.05e-09!52;UBERON:0000025!2.20e-09!114;UBERON:0000955!9.52e-09!50;UBERON:0006238!9.52e-09!50;UBERON:0002020!1.03e-08!34;UBERON:0002616!1.04e-08!49;UBERON:0004111!2.20e-08!122;UBERON:0000033!8.22e-08!63;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10;UBERON:0002791!2.86e-07!29;UBERON:0003528!2.86e-07!29;UBERON:0001893!2.86e-07!29;UBERON:0003056!5.43e-07!49 | |ontology_enrichment_uberon=UBERON:0000468!3.41e-13!333;UBERON:0004121!1.12e-10!102;UBERON:0000924!1.12e-10!102;UBERON:0006601!1.12e-10!102;UBERON:0002346!2.94e-10!71;UBERON:0003075!2.94e-10!71;UBERON:0007284!2.94e-10!71;UBERON:0000922!1.00e-09!328;UBERON:0000073!1.31e-09!75;UBERON:0001016!1.31e-09!75;UBERON:0001017!1.32e-09!73;UBERON:0005743!1.32e-09!73;UBERON:0001049!2.05e-09!52;UBERON:0005068!2.05e-09!52;UBERON:0006241!2.05e-09!52;UBERON:0007135!2.05e-09!52;UBERON:0000025!2.20e-09!114;UBERON:0000955!9.52e-09!50;UBERON:0006238!9.52e-09!50;UBERON:0002020!1.03e-08!34;UBERON:0002616!1.04e-08!49;UBERON:0004111!2.20e-08!122;UBERON:0000033!8.22e-08!63;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10;UBERON:0002791!2.86e-07!29;UBERON:0003528!2.86e-07!29;UBERON:0001893!2.86e-07!29;UBERON:0003056!5.43e-07!49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.63e-11,92;UBERON:0004121,2.92e-10,95;UBERON:0000924,2.92e-10,95;UBERON:0006601,2.92e-10,95;UBERON:0000073,3.60e-10,54;UBERON:0002346,5.13e-10,64;UBERON:0003075,5.13e-10,64;UBERON:0007284,5.13e-10,64;UBERON:0010371,7.55e-10,73;UBERON:0001016,1.30e-09,75;UBERON:0001017,1.31e-09,73;UBERON:0001049,2.03e-09,52;UBERON:0005068,2.03e-09,52;UBERON:0006241,2.03e-09,52;UBERON:0007135,2.03e-09,52;UBERON:0000025,2.18e-09,114;UBERON:0002020,1.02e-08,34;UBERON:0004111,2.18e-08,122;UBERON:0000955,1.49e-07,47;UBERON:0006238,1.49e-07,47;UBERON:0002616,1.63e-07,46;UBERON:0002021,1.78e-07,10;UBERON:0000411,1.78e-07,10;UBERON:0001950,1.78e-07,10;UBERON:0003528,2.85e-07,29;UBERON:0002791,2.85e-07,29;UBERON:0001893,2.85e-07,29;UBERON:0003056,5.40e-07,49 | |||
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| ||
|short_description=p1@Apbb2 | |short_description=p1@Apbb2 | ||
}} | }} |
Latest revision as of 04:10, 26 September 2015
Short description: | p1@Apbb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Apbb2_5end |
Coexpression cluster: | MCL_coexpression_mm9:780 |
Association with transcript: | 0bp_to_ENSMUST00000087256, ENSMUST00000159847, ENSMUST00000160103, ENSMUST00000160185, ENSMUST00000160870, ENSMUST00000161936, ENSMUST00000162349, ENSMUST00000162382, ENSMUST00000162401, NM_009686_5end |
EntrezGene: | Apbb2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 6.63e-11 | 92 |
ectoderm-derived structure | 2.92e-10 | 95 |
ectoderm | 2.92e-10 | 95 |
presumptive ectoderm | 2.92e-10 | 95 |
regional part of nervous system | 3.60e-10 | 54 |
neurectoderm | 5.13e-10 | 64 |
neural plate | 5.13e-10 | 64 |
presumptive neural plate | 5.13e-10 | 64 |
ecto-epithelium | 7.55e-10 | 73 |
nervous system | 1.30e-09 | 75 |
central nervous system | 1.31e-09 | 73 |
neural tube | 2.03e-09 | 52 |
neural rod | 2.03e-09 | 52 |
future spinal cord | 2.03e-09 | 52 |
neural keel | 2.03e-09 | 52 |
tube | 2.18e-09 | 114 |
gray matter | 1.02e-08 | 34 |
anatomical conduit | 2.18e-08 | 122 |
brain | 1.49e-07 | 47 |
future brain | 1.49e-07 | 47 |
regional part of brain | 1.63e-07 | 46 |
occipital lobe | 1.78e-07 | 10 |
visual cortex | 1.78e-07 | 10 |
neocortex | 1.78e-07 | 10 |
brain grey matter | 2.85e-07 | 29 |
regional part of telencephalon | 2.85e-07 | 29 |
telencephalon | 2.85e-07 | 29 |
pre-chordal neural plate | 5.40e-07 | 49 |