FFCP PHASE1:Mm9::chr17:29375034..29375111,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=240058|HGNC=|MCL_coexpression_id=2201|UniProt=Q8JZW4,E9Q7V9|association_with_transcript=-292bp_to_ENSMUST00000024805,ENSMUST00000057091_5end|description=CAGE_peak_1_at_Cpne5_5end|id=chr17:29375034..29375111,-|ontology_enrichment_celltype=CL:0000117!3.38e-12!23;CL:0000337!3.38e-12!23;CL:0000540!4.33e-07!33;CL:0000047!4.33e-07!33;CL:0000031!4.33e-07!33;CL:0000404!4.33e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,9.00e-14,23;CL:0000337,9.00e-14,23;CL:0000540,3.48e-07,33;CL:0000047,3.48e-07,33;CL:0000031,3.48e-07,33;CL:0000404,3.48e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.98e-17!52;UBERON:0005068!1.98e-17!52;UBERON:0006241!1.98e-17!52;UBERON:0007135!1.98e-17!52;UBERON:0002346!4.69e-17!71;UBERON:0003075!4.69e-17!71;UBERON:0007284!4.69e-17!71;UBERON:0003056!1.12e-16!49;UBERON:0002020!3.71e-16!34;UBERON:0003080!4.06e-16!40;UBERON:0000033!5.39e-16!63;UBERON:0000955!7.51e-16!50;UBERON:0006238!7.51e-16!50;UBERON:0002780!1.82e-15!39;UBERON:0001890!1.82e-15!39;UBERON:0006240!1.82e-15!39;UBERON:0002616!3.28e-15!49;UBERON:0001017!2.43e-14!73;UBERON:0005743!2.43e-14!73;UBERON:0000073!8.28e-14!75;UBERON:0001016!8.28e-14!75;UBERON:0004121!1.71e-13!102;UBERON:0000924!1.71e-13!102;UBERON:0006601!1.71e-13!102;UBERON:0002791!1.39e-12!29;UBERON:0003528!1.39e-12!29;UBERON:0001893!1.39e-12!29;UBERON:0000956!4.11e-08!21;UBERON:0001869!4.11e-08!21;UBERON:0000203!4.11e-08!21;UBERON:0002021!9.28e-08!10;UBERON:0000411!9.28e-08!10;UBERON:0001950!9.28e-08!10;UBERON:0002619!1.05e-07!17;UBERON:0000025!1.83e-07!114;UBERON:0000153!2.84e-07!94;UBERON:0000468!3.66e-07!333;UBERON:0004111!5.98e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.24e-21,54;UBERON:0001049,3.86e-20,52;UBERON:0005068,3.86e-20,52;UBERON:0006241,3.86e-20,52;UBERON:0007135,3.86e-20,52;UBERON:0002020,9.07e-19,34;UBERON:0003080,1.08e-18,40;UBERON:0003056,4.17e-18,49;UBERON:0002346,5.77e-18,64;UBERON:0003075,5.77e-18,64;UBERON:0007284,5.77e-18,64;UBERON:0002780,6.14e-18,39;UBERON:0001890,6.14e-18,39;UBERON:0006240,6.14e-18,39;UBERON:0010314,9.94e-18,92;UBERON:0000955,1.69e-16,47;UBERON:0006238,1.69e-16,47;UBERON:0001017,2.60e-16,73;UBERON:0002616,8.89e-16,46;UBERON:0001016,2.80e-15,75;UBERON:0010371,8.38e-15,73;UBERON:0003528,1.24e-14,29;UBERON:0002791,1.24e-14,29;UBERON:0001893,1.24e-14,29;UBERON:0004121,3.01e-12,95;UBERON:0000924,3.01e-12,95;UBERON:0006601,3.01e-12,95;UBERON:0000956,1.82e-09,21;UBERON:0001869,1.82e-09,21;UBERON:0000203,1.82e-09,21;UBERON:0002619,5.00e-09,17;UBERON:0002021,1.11e-08,10;UBERON:0000411,1.11e-08,10;UBERON:0001950,1.11e-08,10;UBERON:0000025,1.81e-07,114|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57181818634493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,2.57836046138721,8.9019242778223,8.99284664762456,12.0427966666174,0,0,0,0,0,0,0,1.03689612308478,1.35005938331691,1.68259969081106,21.7094748146891,18.3320888989839,3.79721477566358,4.12135525378416,9.19218786610021,4.40463523997555,6.00130489000382,8.1411462625809,10.8146755938759,6.31264740856627,7.8137005583514,3.62937898701795,7.31591393041184,6.72312290217964,29.1682299618931,25.7692742246376,16.9623495701024,0.075726193333184,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.79928715803342,0,0,2.94925055502431,2.43572382649713,1.15307748628029,0.60289056221049,1.29347577849275,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0,0.484875253135222,0,0,0,0,0,0,0,12.1330417917906,43.4625572677695,21.2355855070741,19.9897968221118,16.1100738118108,8.10373373782284,17.8465389374533,3.86989582631202,0.497627882440372,7.07623723614289,0.841767423545896,1.95180664444056,2.29902104433473,3.24111833649629,3.0140963567143,2.38127747029647,1.0249097622788,1.87403449119458,0.776110112217047,0.646703978798527,1.32374256117473,2.99116911078713,1.7535658594206,2.78047249225598,2.78601733217733,2.05782136407943,4.37875387000685,0,0,0,9.52778553663309,3.51789089971644,5.94204802821349,7.10234206755631,4.9191057936851,3.08534225774756,3.25547522650571,1.60964040839772,1.63471479314037,2.63295759861569,1.14917224855367,0.648550476366846,0.877199924551994,1.3173006917463,0.671032093801859,4.20579897128254,4.32199371992995,0,0.264450566663544,3.19932375802851,2.78684006232526,3.47942145569652,1.81515172161008,1.77902435075896,1.52180500890047,0,0.988193728344065,0.251335208800269,0.994782360205754,0.779856348476481,0,0,0,2.84501851429623,1.37098215131675,0,1.4255592949172,1.16371492300575,1.1221731182451,0.252946148497029,0,0,0,0,0.333690211432188,0.393117990226406,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.369506380333209,3.60033682363921,2.44447464663039,1.01847051465113,0.938760993154008,0.670025029767263,0,0.195133647857799,0,0,0.159454768657487,0.491589944147214,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,2.56880943980467,1.87538698547525,0,0,0.315508219416257,0.780877488593277,0.646270193198397,0,0,0.283076530788832,0,0,0,13.4954952897159,0.567760340833074,5.34196811001766,5.04949573996086,1.64970122972535,0,2.42780636154981,1.51161778482376,0.188605079755898,0.590603785761546,0,0.258428293168221,0.363533729477506,0,0,0,0,1.02131881726136,4.14140516272013,4.39819524861365,3.64372959553707,1.59606210278046,2.85390108163313,2.96188237083818,1.522324745573,0.469343416127421,0.21183207086382,0.220528398054962,0.16488625294148,2.09903754704677,1.08563264870681,0.358117032009409,0.656563598980245,0,3.15223013417866,0,3.09580301944834,0,0,0,0,0.169978429993855,0,0,0,3.63786392618306,2.64315307264903,2.59212817972323,2.29997125615916,1.52853794622324,0.674321731924103,0.578574190077352,0,0,0.621339313086926,0.56369293868419,2.24274819065968,2.48187735685646,8.94475466382619,6.71631082084202,5.74450826668646,4.69428954583016,2.3436789271911,3.67007705489988,1.93267296660805,1.72818003754719,0,1.01362607645082,0.616265742988964,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.386379188064381,0,1.46521299413812,0,0.501572104035363,12.4245405375755,5.9842280745933,10.8850147553485,10.4830441229649,11.6464028361009,14.3524840504043,13.5004500046361,16.6618845192962,10.4222754066367,23.8169743405837,0.62272408550506,1.59609949360412,2.90247129782028,2.43106717068294,2.72497111416377,4.22840069435032,2.44471400581777,2.67845574410562,4.81378814387723,2.02157769411038,2.5347929989024,2.45214243801899,3.27745276144588,2.75308155340938,2.5845961030026,2.85776214769844,3.24476112645595,2.70072908649187,1.64834360321323,1.91358596174717,3.42869252385415,3.19456451086807,1.90748951957857,2.61623549938191,1.12931256498397,2.45382362885862,3.10977553883713,3.15683653725411,2.44447404922551,2.24456908663095,3.08451047122853,3.44765688314472,2.45538625901814,3.25367366490529,2.50778594275484,2.74791635731741,3.50897412668113,2.14871054048298,2.10417165275728,0.882365676478062,0|short_description=p1@Cpne5}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=240058 | |||
|HGNC= | |||
|MCL_coexpression_id=2201 | |||
|TSSclassifier=NA | |||
|UniProt=Q8JZW4,E9Q7V9 | |||
|association_with_transcript=-292bp_to_ENSMUST00000024805,ENSMUST00000057091_5end | |||
|cluster_id=chr17:29375034..29375111,- | |||
|description=CAGE_peak_1_at_Cpne5_5end | |||
|id=chr17:29375034..29375111,- | |||
|ontology_enrichment_celltype=CL:0000117!3.38e-12!23;CL:0000337!3.38e-12!23;CL:0000540!4.33e-07!33;CL:0000047!4.33e-07!33;CL:0000031!4.33e-07!33;CL:0000404!4.33e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.00e-14,23;CL:0000337,9.00e-14,23;CL:0000540,3.48e-07,33;CL:0000047,3.48e-07,33;CL:0000031,3.48e-07,33;CL:0000404,3.48e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.98e-17!52;UBERON:0005068!1.98e-17!52;UBERON:0006241!1.98e-17!52;UBERON:0007135!1.98e-17!52;UBERON:0002346!4.69e-17!71;UBERON:0003075!4.69e-17!71;UBERON:0007284!4.69e-17!71;UBERON:0003056!1.12e-16!49;UBERON:0002020!3.71e-16!34;UBERON:0003080!4.06e-16!40;UBERON:0000033!5.39e-16!63;UBERON:0000955!7.51e-16!50;UBERON:0006238!7.51e-16!50;UBERON:0002780!1.82e-15!39;UBERON:0001890!1.82e-15!39;UBERON:0006240!1.82e-15!39;UBERON:0002616!3.28e-15!49;UBERON:0001017!2.43e-14!73;UBERON:0005743!2.43e-14!73;UBERON:0000073!8.28e-14!75;UBERON:0001016!8.28e-14!75;UBERON:0004121!1.71e-13!102;UBERON:0000924!1.71e-13!102;UBERON:0006601!1.71e-13!102;UBERON:0002791!1.39e-12!29;UBERON:0003528!1.39e-12!29;UBERON:0001893!1.39e-12!29;UBERON:0000956!4.11e-08!21;UBERON:0001869!4.11e-08!21;UBERON:0000203!4.11e-08!21;UBERON:0002021!9.28e-08!10;UBERON:0000411!9.28e-08!10;UBERON:0001950!9.28e-08!10;UBERON:0002619!1.05e-07!17;UBERON:0000025!1.83e-07!114;UBERON:0000153!2.84e-07!94;UBERON:0000468!3.66e-07!333;UBERON:0004111!5.98e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.24e-21,54;UBERON:0001049,3.86e-20,52;UBERON:0005068,3.86e-20,52;UBERON:0006241,3.86e-20,52;UBERON:0007135,3.86e-20,52;UBERON:0002020,9.07e-19,34;UBERON:0003080,1.08e-18,40;UBERON:0003056,4.17e-18,49;UBERON:0002346,5.77e-18,64;UBERON:0003075,5.77e-18,64;UBERON:0007284,5.77e-18,64;UBERON:0002780,6.14e-18,39;UBERON:0001890,6.14e-18,39;UBERON:0006240,6.14e-18,39;UBERON:0010314,9.94e-18,92;UBERON:0000955,1.69e-16,47;UBERON:0006238,1.69e-16,47;UBERON:0001017,2.60e-16,73;UBERON:0002616,8.89e-16,46;UBERON:0001016,2.80e-15,75;UBERON:0010371,8.38e-15,73;UBERON:0003528,1.24e-14,29;UBERON:0002791,1.24e-14,29;UBERON:0001893,1.24e-14,29;UBERON:0004121,3.01e-12,95;UBERON:0000924,3.01e-12,95;UBERON:0006601,3.01e-12,95;UBERON:0000956,1.82e-09,21;UBERON:0001869,1.82e-09,21;UBERON:0000203,1.82e-09,21;UBERON:0002619,5.00e-09,17;UBERON:0002021,1.11e-08,10;UBERON:0000411,1.11e-08,10;UBERON:0001950,1.11e-08,10;UBERON:0000025,1.81e-07,114 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57181818634493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,0,0,0,0,0,0,2.57836046138721,8.9019242778223,8.99284664762456,12.0427966666174,0,0,0,0,0,0,0,1.03689612308478,1.35005938331691,1.68259969081106,21.7094748146891,18.3320888989839,3.79721477566358,4.12135525378416,9.19218786610021,4.40463523997555,6.00130489000382,8.1411462625809,10.8146755938759,6.31264740856627,7.8137005583514,3.62937898701795,7.31591393041184,6.72312290217964,29.1682299618931,25.7692742246376,16.9623495701024,0.075726193333184,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0,0,0,0.79928715803342,0,0,2.94925055502431,2.43572382649713,1.15307748628029,0.60289056221049,1.29347577849275,0.125666591329675,0.247194967734374,0,0,0.161766849947409,0,0.484875253135222,0,0,0,0,0,0,0,12.1330417917906,43.4625572677695,21.2355855070741,19.9897968221118,16.1100738118108,8.10373373782284,17.8465389374533,3.86989582631202,0.497627882440372,7.07623723614289,0.841767423545896,1.95180664444056,2.29902104433473,3.24111833649629,3.0140963567143,2.38127747029647,1.0249097622788,1.87403449119458,0.776110112217047,0.646703978798527,1.32374256117473,2.99116911078713,1.7535658594206,2.78047249225598,2.78601733217733,2.05782136407943,4.37875387000685,0,0,0,9.52778553663309,3.51789089971644,5.94204802821349,7.10234206755631,4.9191057936851,3.08534225774756,3.25547522650571,1.60964040839772,1.63471479314037,2.63295759861569,1.14917224855367,0.648550476366846,0.877199924551994,1.3173006917463,0.671032093801859,4.20579897128254,4.32199371992995,0,0.264450566663544,3.19932375802851,2.78684006232526,3.47942145569652,1.81515172161008,1.77902435075896,1.52180500890047,0,0.988193728344065,0.251335208800269,0.994782360205754,0.779856348476481,0,0,0,2.84501851429623,1.37098215131675,0,1.4255592949172,1.16371492300575,1.1221731182451,0.252946148497029,0,0,0,0,0.333690211432188,0.393117990226406,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0,0,0,0,0,0.369506380333209,3.60033682363921,2.44447464663039,1.01847051465113,0.938760993154008,0.670025029767263,0,0.195133647857799,0,0,0.159454768657487,0.491589944147214,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,2.56880943980467,1.87538698547525,0,0,0.315508219416257,0.780877488593277,0.646270193198397,0,0,0.283076530788832,0,0,0,13.4954952897159,0.567760340833074,5.34196811001766,5.04949573996086,1.64970122972535,0,2.42780636154981,1.51161778482376,0.188605079755898,0.590603785761546,0,0.258428293168221,0.363533729477506,0,0,0,0,1.02131881726136,4.14140516272013,4.39819524861365,3.64372959553707,1.59606210278046,2.85390108163313,2.96188237083818,1.522324745573,0.469343416127421,0.21183207086382,0.220528398054962,0.16488625294148,2.09903754704677,1.08563264870681,0.358117032009409,0.656563598980245,0,3.15223013417866,0,3.09580301944834,0,0,0,0,0.169978429993855,0,0,0,3.63786392618306,2.64315307264903,2.59212817972323,2.29997125615916,1.52853794622324,0.674321731924103,0.578574190077352,0,0,0.621339313086926,0.56369293868419,2.24274819065968,2.48187735685646,8.94475466382619,6.71631082084202,5.74450826668646,4.69428954583016,2.3436789271911,3.67007705489988,1.93267296660805,1.72818003754719,0,1.01362607645082,0.616265742988964,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,0.226730383615211,0,0,0,0.386379188064381,0,1.46521299413812,0,0.501572104035363,12.4245405375755,5.9842280745933,10.8850147553485,10.4830441229649,11.6464028361009,14.3524840504043,13.5004500046361,16.6618845192962,10.4222754066367,23.8169743405837,0.62272408550506,1.59609949360412,2.90247129782028,2.43106717068294,2.72497111416377,4.22840069435032,2.44471400581777,2.67845574410562,4.81378814387723,2.02157769411038,2.5347929989024,2.45214243801899,3.27745276144588,2.75308155340938,2.5845961030026,2.85776214769844,3.24476112645595,2.70072908649187,1.64834360321323,1.91358596174717,3.42869252385415,3.19456451086807,1.90748951957857,2.61623549938191,1.12931256498397,2.45382362885862,3.10977553883713,3.15683653725411,2.44447404922551,2.24456908663095,3.08451047122853,3.44765688314472,2.45538625901814,3.25367366490529,2.50778594275484,2.74791635731741,3.50897412668113,2.14871054048298,2.10417165275728,0.882365676478062,0 | |||
|short_description=p1@Cpne5 | |||
}} |
Latest revision as of 04:55, 26 September 2015
Short description: | p1@Cpne5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cpne5_5end |
Coexpression cluster: | MCL_coexpression_mm9:2201 |
Association with transcript: | -292bp_to_ENSMUST00000024805, ENSMUST00000057091_5end |
EntrezGene: | Cpne5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.00e-14 | 23 |
neuroblast (sensu Vertebrata) | 9.00e-14 | 23 |
neuron | 3.48e-07 | 33 |
neuronal stem cell | 3.48e-07 | 33 |
neuroblast | 3.48e-07 | 33 |
electrically signaling cell | 3.48e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.24e-21 | 54 |
neural tube | 3.86e-20 | 52 |
neural rod | 3.86e-20 | 52 |
future spinal cord | 3.86e-20 | 52 |
neural keel | 3.86e-20 | 52 |
gray matter | 9.07e-19 | 34 |
anterior neural tube | 1.08e-18 | 40 |
pre-chordal neural plate | 4.17e-18 | 49 |
neurectoderm | 5.77e-18 | 64 |
neural plate | 5.77e-18 | 64 |
presumptive neural plate | 5.77e-18 | 64 |
regional part of forebrain | 6.14e-18 | 39 |
forebrain | 6.14e-18 | 39 |
future forebrain | 6.14e-18 | 39 |
structure with developmental contribution from neural crest | 9.94e-18 | 92 |
brain | 1.69e-16 | 47 |
future brain | 1.69e-16 | 47 |
central nervous system | 2.60e-16 | 73 |
regional part of brain | 8.89e-16 | 46 |
nervous system | 2.80e-15 | 75 |
ecto-epithelium | 8.38e-15 | 73 |
brain grey matter | 1.24e-14 | 29 |
regional part of telencephalon | 1.24e-14 | 29 |
telencephalon | 1.24e-14 | 29 |
ectoderm-derived structure | 3.01e-12 | 95 |
ectoderm | 3.01e-12 | 95 |
presumptive ectoderm | 3.01e-12 | 95 |
cerebral cortex | 1.82e-09 | 21 |
cerebral hemisphere | 1.82e-09 | 21 |
pallium | 1.82e-09 | 21 |
regional part of cerebral cortex | 5.00e-09 | 17 |
occipital lobe | 1.11e-08 | 10 |
visual cortex | 1.11e-08 | 10 |
neocortex | 1.11e-08 | 10 |
tube | 1.81e-07 | 114 |