FFCP PHASE1:Mm9::chr9:114597984..114597995,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235661 | |EntrezGene=235661 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2733 | |MCL_coexpression_id=2733 | ||
|TSSclassifier=NA | |||
|UniProt=Q3TWG5,Q8R1Q8 | |UniProt=Q3TWG5,Q8R1Q8 | ||
|association_with_transcript=35bp_to_NM_146229,uc009rxx.1,uc009rxy.1_5end | |association_with_transcript=35bp_to_NM_146229,uc009rxx.1,uc009rxy.1_5end | ||
|cluster_id=chr9:114597984..114597995,+ | |||
|description=CAGE_peak_5_at_Dync1li1_5end | |description=CAGE_peak_5_at_Dync1li1_5end | ||
|id=chr9:114597984..114597995,+ | |id=chr9:114597984..114597995,+ | ||
|ontology_enrichment_celltype=CL:0000117!9.38e-10!23;CL:0000337!9.38e-10!23;CL:0000540!1.17e-09!33;CL:0000047!1.17e-09!33;CL:0000031!1.17e-09!33;CL:0000404!1.17e-09!33;CL:0002321!3.39e-08!70;CL:0000220!3.39e-08!70;CL:0000393!2.19e-07!39;CL:0000211!2.19e-07!39;CL:0000221!4.73e-07!44;CL:0000133!4.73e-07!44;CL:0002319!5.61e-07!43 | |ontology_enrichment_celltype=CL:0000117!9.38e-10!23;CL:0000337!9.38e-10!23;CL:0000540!1.17e-09!33;CL:0000047!1.17e-09!33;CL:0000031!1.17e-09!33;CL:0000404!1.17e-09!33;CL:0002321!3.39e-08!70;CL:0000220!3.39e-08!70;CL:0000393!2.19e-07!39;CL:0000211!2.19e-07!39;CL:0000221!4.73e-07!44;CL:0000133!4.73e-07!44;CL:0002319!5.61e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.74e-10,23;CL:0000337,4.74e-10,23;CL:0000540,5.94e-10,33;CL:0000047,5.94e-10,33;CL:0000031,5.94e-10,33;CL:0000404,5.94e-10,33;CL:0002321,5.70e-09,70;CL:0000393,1.15e-07,39;CL:0000211,1.15e-07,39;CL:0000221,1.37e-07,44;CL:0000133,1.37e-07,44;CL:0002319,1.64e-07,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.92e-17!75;UBERON:0001016!3.92e-17!75;UBERON:0001017!1.01e-16!73;UBERON:0005743!1.01e-16!73;UBERON:0001049!6.76e-16!52;UBERON:0005068!6.76e-16!52;UBERON:0006241!6.76e-16!52;UBERON:0007135!6.76e-16!52;UBERON:0000955!1.10e-14!50;UBERON:0006238!1.10e-14!50;UBERON:0000033!1.80e-14!63;UBERON:0002616!2.62e-14!49;UBERON:0004121!3.72e-14!102;UBERON:0000924!3.72e-14!102;UBERON:0006601!3.72e-14!102;UBERON:0002346!4.24e-14!71;UBERON:0003075!4.24e-14!71;UBERON:0007284!4.24e-14!71;UBERON:0002020!2.27e-12!34;UBERON:0003080!9.36e-11!40;UBERON:0003056!1.57e-10!49;UBERON:0002780!1.80e-10!39;UBERON:0001890!1.80e-10!39;UBERON:0006240!1.80e-10!39;UBERON:0002791!1.76e-09!29;UBERON:0003528!1.76e-09!29;UBERON:0001893!1.76e-09!29;UBERON:0004111!6.79e-07!122 | |ontology_enrichment_uberon=UBERON:0000073!3.92e-17!75;UBERON:0001016!3.92e-17!75;UBERON:0001017!1.01e-16!73;UBERON:0005743!1.01e-16!73;UBERON:0001049!6.76e-16!52;UBERON:0005068!6.76e-16!52;UBERON:0006241!6.76e-16!52;UBERON:0007135!6.76e-16!52;UBERON:0000955!1.10e-14!50;UBERON:0006238!1.10e-14!50;UBERON:0000033!1.80e-14!63;UBERON:0002616!2.62e-14!49;UBERON:0004121!3.72e-14!102;UBERON:0000924!3.72e-14!102;UBERON:0006601!3.72e-14!102;UBERON:0002346!4.24e-14!71;UBERON:0003075!4.24e-14!71;UBERON:0007284!4.24e-14!71;UBERON:0002020!2.27e-12!34;UBERON:0003080!9.36e-11!40;UBERON:0003056!1.57e-10!49;UBERON:0002780!1.80e-10!39;UBERON:0001890!1.80e-10!39;UBERON:0006240!1.80e-10!39;UBERON:0002791!1.76e-09!29;UBERON:0003528!1.76e-09!29;UBERON:0001893!1.76e-09!29;UBERON:0004111!6.79e-07!122 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.32e-18,75;UBERON:0010314,6.78e-18,92;UBERON:0000073,1.17e-17,54;UBERON:0001017,1.69e-17,73;UBERON:0001049,3.54e-16,52;UBERON:0005068,3.54e-16,52;UBERON:0006241,3.54e-16,52;UBERON:0007135,3.54e-16,52;UBERON:0002346,5.10e-16,64;UBERON:0003075,5.10e-16,64;UBERON:0007284,5.10e-16,64;UBERON:0004121,7.33e-16,95;UBERON:0000924,7.33e-16,95;UBERON:0006601,7.33e-16,95;UBERON:0010371,6.02e-14,73;UBERON:0000955,4.90e-13,47;UBERON:0006238,4.90e-13,47;UBERON:0002020,9.23e-13,34;UBERON:0002616,1.17e-12,46;UBERON:0003080,7.13e-11,40;UBERON:0003056,1.38e-10,49;UBERON:0002780,1.40e-10,39;UBERON:0001890,1.40e-10,39;UBERON:0006240,1.40e-10,39;UBERON:0003528,9.11e-10,29;UBERON:0002791,9.11e-10,29;UBERON:0001893,9.11e-10,29;UBERON:0004111,5.38e-07,122;UBERON:0000956,7.08e-07,21;UBERON:0001869,7.08e-07,21;UBERON:0000203,7.08e-07,21;UBERON:0000025,9.06e-07,114;UBERON:0002619,9.97e-07,17 | |||
|phase1_expression=2.5623815536767,9.07336059862339,10.4649825059593,7.25914107136392,12.0214975187123,4.02910252588535,3.03696432774183,0.258246646883153,1.54867594366833,1.40438715793196,0.34243593645101,0.159544317990673,0.342401459862411,0.262261207256992,0.666219523631325,0.202475267389826,1.39912375625629,0,0.274228867211478,0,2.55129870453209,0.397163804803541,0.522399578277871,2.55987876469451,2.98232065387321,5.7423196411502,3.4460959692726,3.878482188346,5.51067916423484,5.79669298447841,1.99557459589774,0.635030673459631,1.23012957516914,0,1.1554064790051,2.32728503501889,2.45003227514843,0.418531630736908,1.5626706890476,0.523523743973798,0,0.683045484958446,0,0.503587271902309,1.01376931219515,0,1.56478268869608,3.05235218932625,1.5378032791413,1.94429899074283,0.55994568650145,0,0,1.45072428402269,0.672187598284928,1.80081605225163,0.85960031981627,3.09403255366465,5.26022798234954,5.81890077199236,3.1691570175309,0.677689064138264,0,0.899899717281399,0.988866362566974,0,0.299600110518405,0.384218305321555,1.45165457231869,1.75507719831198,2.73422449756797,7.42692559449889,5.30084498283872,1.95985278743926,2.58782771749238,3.67687514644008,6.60695285996332,6.51205424234457,7.37311359629969,4.08847491963601,5.76372154695181,6.25096044668112,4.18774498502071,1.68828783009504,5.04234217663473,5.89257170947335,5.26775218956681,8.01517617048792,2.42323818666189,2.41828992341714,3.76823835312181,3.44169550792555,1.3599426674155,1.07940638327563,1.29955283489534,1.79210754838934,1.68533304158102,0.340860645156116,0.779358013808606,0.35333957451034,2.11265129665021,0,5.09610479413291,14.2213340630666,1.94841936910093,2.02687892380079,2.02209778005913,1.7127581957859,0.258937883647172,2.22663208597237,1.38788261412909,0.608930956624282,0.922461989024234,0.452167921657868,2.82212897125692,1.88499886994513,1.97755974187499,1.44599356919912,0.884610551949874,2.26473589926373,1.54589062922275,1.93950101254089,0,4.68449275218475,3.14170060220183,1.78819938646014,1.31796636956512,0,0.762421362438388,2.99581278809645,2.74500361691176,3.14135880282161,4.17178368461463,4.85859368927628,4.77912502486988,5.19172041816825,1.93494791315601,0.870848794270651,0.505445516867349,4.41927897361595,0.520481771850815,0.689706313300419,1.0803727788321,2.10986744970001,3.06164246180975,2.3060469651273,2.15513966487376,5.43277078551933,0.862271971731369,0.756424320671277,1.23165786914764,0.657587197282725,1.39023624612799,2.089512999133,0.823128545631774,0.796137067273973,0.702213187313235,0.772043721344145,0.568326998791185,1.65700618028402,1.17263029990548,2.70093092191522,3.07768156260773,2.16440654922144,2.1597395804233,1.86027155800326,2.68273401399619,5.3712057488898,4.27855609775049,1.80584210487005,3.64809642956351,6.14039947186396,5.48875288227627,6.03928884421673,3.57492912559016,3.91037527041281,4.62586296177317,4.23120906661671,1.2797295032114,0.696710015581316,1.28867461322093,2.01683524623343,1.33426826306922,2.09248188723815,2.84717436926707,2.79988223030818,2.76468729680296,0.994782360205754,2.14460495831032,0.898819408654221,3.02593269824572,3.98282546508734,0.948339504765408,0.913988100877831,1.1270773567308,0.610953983535943,1.35766741017338,1.47285221769669,2.02356918797623,2.36176236767363,1.255989822731,2.09775178667061,0.889357881261447,0.166845105716094,0.589676985339609,0.449724224769707,0.405720242777006,0.964708639009667,0,1.15078454980324,0.648540907100142,0.823684239564244,1.43768206527355,1.11642284300551,0.312037673114561,1.26289438973556,2.69096120282868,1.92977408545347,0.739012760666419,0.757965647081939,1.14075483509418,0.339490171550376,0.234690248288502,0.335012514883631,1.19021820443007,2.73187107000918,1.26108115284953,1.32878813789265,1.43509291791738,1.14704320301017,1.20879487306127,1.59113964439663,3.01582567878545,2.17562273527484,0.491764273019036,1.37968373152366,3.05046120976805,5.15731421005694,0.491804836130026,3.28212205365685,2.83957397474631,2.34263246577983,1.50796378412959,2.15071918157297,2.22798674082394,1.13230612315533,1.61924280669958,2.92255857911312,2.37172666767914,3.21321316421807,0.709700426041343,0.35613120733451,0.81443479676788,0.659880491890142,2.65490276679926,0.485561272309963,0.906970670894253,1.13163047853539,2.36241514304618,0.922305443831782,2.06742634534577,1.45413491791002,2.49548164869305,2.52829406348653,5.27093042874994,2.06271086496374,3.06395645178409,1.44048875225048,0.905510786479282,2.7863814554107,2.48276327099183,1.60531935841864,2.30368628842969,3.04464949114599,1.87737366450968,1.27099242518292,3.30792597082443,1.6488625294148,1.13025098687134,1.62844897306021,0.716234064018819,1.64140899745061,2.33184669303881,4.45020724825223,0.170870880797853,0.412773735926445,0.555583582109135,0.188368457004691,0.27338845544205,0.228778173206523,1.18984900995699,1.25956307091292,0.829199842826543,0.954670618015114,1.42351197111511,0.813277868507395,0.86404272657441,0.836353184057875,1.09181281873089,1.61837215661785,1.81837602595739,1.57053565190418,2.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| |phase1_expression=2.5623815536767,9.07336059862339,10.4649825059593,7.25914107136392,12.0214975187123,4.02910252588535,3.03696432774183,0.258246646883153,1.54867594366833,1.40438715793196,0.34243593645101,0.159544317990673,0.342401459862411,0.262261207256992,0.666219523631325,0.202475267389826,1.39912375625629,0,0.274228867211478,0,2.55129870453209,0.397163804803541,0.522399578277871,2.55987876469451,2.98232065387321,5.7423196411502,3.4460959692726,3.878482188346,5.51067916423484,5.79669298447841,1.99557459589774,0.635030673459631,1.23012957516914,0,1.1554064790051,2.32728503501889,2.45003227514843,0.418531630736908,1.5626706890476,0.523523743973798,0,0.683045484958446,0,0.503587271902309,1.01376931219515,0,1.56478268869608,3.05235218932625,1.5378032791413,1.94429899074283,0.55994568650145,0,0,1.45072428402269,0.672187598284928,1.80081605225163,0.85960031981627,3.09403255366465,5.26022798234954,5.81890077199236,3.1691570175309,0.677689064138264,0,0.899899717281399,0.988866362566974,0,0.299600110518405,0.384218305321555,1.45165457231869,1.75507719831198,2.73422449756797,7.42692559449889,5.30084498283872,1.95985278743926,2.58782771749238,3.67687514644008,6.60695285996332,6.51205424234457,7.37311359629969,4.08847491963601,5.76372154695181,6.25096044668112,4.18774498502071,1.68828783009504,5.04234217663473,5.89257170947335,5.26775218956681,8.01517617048792,2.42323818666189,2.41828992341714,3.76823835312181,3.44169550792555,1.3599426674155,1.07940638327563,1.29955283489534,1.79210754838934,1.68533304158102,0.340860645156116,0.779358013808606,0.35333957451034,2.11265129665021,0,5.09610479413291,14.2213340630666,1.94841936910093,2.02687892380079,2.02209778005913,1.7127581957859,0.258937883647172,2.22663208597237,1.38788261412909,0.608930956624282,0.922461989024234,0.452167921657868,2.82212897125692,1.88499886994513,1.97755974187499,1.44599356919912,0.884610551949874,2.26473589926373,1.54589062922275,1.93950101254089,0,4.68449275218475,3.14170060220183,1.78819938646014,1.31796636956512,0,0.762421362438388,2.99581278809645,2.74500361691176,3.14135880282161,4.17178368461463,4.85859368927628,4.77912502486988,5.19172041816825,1.93494791315601,0.870848794270651,0.505445516867349,4.41927897361595,0.520481771850815,0.689706313300419,1.0803727788321,2.10986744970001,3.06164246180975,2.3060469651273,2.15513966487376,5.43277078551933,0.862271971731369,0.756424320671277,1.23165786914764,0.657587197282725,1.39023624612799,2.089512999133,0.823128545631774,0.796137067273973,0.702213187313235,0.772043721344145,0.568326998791185,1.65700618028402,1.17263029990548,2.70093092191522,3.07768156260773,2.16440654922144,2.1597395804233,1.86027155800326,2.68273401399619,5.3712057488898,4.27855609775049,1.80584210487005,3.64809642956351,6.14039947186396,5.48875288227627,6.03928884421673,3.57492912559016,3.91037527041281,4.62586296177317,4.23120906661671,1.2797295032114,0.696710015581316,1.28867461322093,2.01683524623343,1.33426826306922,2.09248188723815,2.84717436926707,2.79988223030818,2.76468729680296,0.994782360205754,2.14460495831032,0.898819408654221,3.02593269824572,3.98282546508734,0.948339504765408,0.913988100877831,1.1270773567308,0.610953983535943,1.35766741017338,1.47285221769669,2.02356918797623,2.36176236767363,1.255989822731,2.09775178667061,0.889357881261447,0.166845105716094,0.589676985339609,0.449724224769707,0.405720242777006,0.964708639009667,0,1.15078454980324,0.648540907100142,0.823684239564244,1.43768206527355,1.11642284300551,0.312037673114561,1.26289438973556,2.69096120282868,1.92977408545347,0.739012760666419,0.757965647081939,1.14075483509418,0.339490171550376,0.234690248288502,0.335012514883631,1.19021820443007,2.73187107000918,1.26108115284953,1.32878813789265,1.43509291791738,1.14704320301017,1.20879487306127,1.59113964439663,3.01582567878545,2.17562273527484,0.491764273019036,1.37968373152366,3.05046120976805,5.15731421005694,0.491804836130026,3.28212205365685,2.83957397474631,2.34263246577983,1.50796378412959,2.15071918157297,2.22798674082394,1.13230612315533,1.61924280669958,2.92255857911312,2.37172666767914,3.21321316421807,0.709700426041343,0.35613120733451,0.81443479676788,0.659880491890142,2.65490276679926,0.485561272309963,0.906970670894253,1.13163047853539,2.36241514304618,0.922305443831782,2.06742634534577,1.45413491791002,2.49548164869305,2.52829406348653,5.27093042874994,2.06271086496374,3.06395645178409,1.44048875225048,0.905510786479282,2.7863814554107,2.48276327099183,1.60531935841864,2.30368628842969,3.04464949114599,1.87737366450968,1.27099242518292,3.30792597082443,1.6488625294148,1.13025098687134,1.62844897306021,0.716234064018819,1.64140899745061,2.33184669303881,4.45020724825223,0.170870880797853,0.412773735926445,0.555583582109135,0.188368457004691,0.27338845544205,0.228778173206523,1.18984900995699,1.25956307091292,0.829199842826543,0.954670618015114,1.42351197111511,0.813277868507395,0.86404272657441,0.836353184057875,1.09181281873089,1.61837215661785,1.81837602595739,1.57053565190418,2.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| ||
|short_description=p5@Dync1li1 | |short_description=p5@Dync1li1 | ||
}} | }} |
Latest revision as of 07:05, 26 September 2015
Short description: | p5@Dync1li1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Dync1li1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2733 |
Association with transcript: | 35bp_to_NM_146229, uc009rxx.1, uc009rxy.1_5end |
EntrezGene: | Dync1li1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.74e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.74e-10 | 23 |
neuron | 5.94e-10 | 33 |
neuronal stem cell | 5.94e-10 | 33 |
neuroblast | 5.94e-10 | 33 |
electrically signaling cell | 5.94e-10 | 33 |
embryonic cell | 5.70e-09 | 70 |
electrically responsive cell | 1.15e-07 | 39 |
electrically active cell | 1.15e-07 | 39 |
ectodermal cell | 1.37e-07 | 44 |
neurectodermal cell | 1.37e-07 | 44 |
neural cell | 1.64e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.32e-18 | 75 |
structure with developmental contribution from neural crest | 6.78e-18 | 92 |
regional part of nervous system | 1.17e-17 | 54 |
central nervous system | 1.69e-17 | 73 |
neural tube | 3.54e-16 | 52 |
neural rod | 3.54e-16 | 52 |
future spinal cord | 3.54e-16 | 52 |
neural keel | 3.54e-16 | 52 |
neurectoderm | 5.10e-16 | 64 |
neural plate | 5.10e-16 | 64 |
presumptive neural plate | 5.10e-16 | 64 |
ectoderm-derived structure | 7.33e-16 | 95 |
ectoderm | 7.33e-16 | 95 |
presumptive ectoderm | 7.33e-16 | 95 |
ecto-epithelium | 6.02e-14 | 73 |
brain | 4.90e-13 | 47 |
future brain | 4.90e-13 | 47 |
gray matter | 9.23e-13 | 34 |
regional part of brain | 1.17e-12 | 46 |
anterior neural tube | 7.13e-11 | 40 |
pre-chordal neural plate | 1.38e-10 | 49 |
regional part of forebrain | 1.40e-10 | 39 |
forebrain | 1.40e-10 | 39 |
future forebrain | 1.40e-10 | 39 |
brain grey matter | 9.11e-10 | 29 |
regional part of telencephalon | 9.11e-10 | 29 |
telencephalon | 9.11e-10 | 29 |
anatomical conduit | 5.38e-07 | 122 |
cerebral cortex | 7.08e-07 | 21 |
cerebral hemisphere | 7.08e-07 | 21 |
pallium | 7.08e-07 | 21 |
tube | 9.06e-07 | 114 |
regional part of cerebral cortex | 9.97e-07 | 17 |