FFCP PHASE1:Mm9::chr5:89012494..89012509,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=52822 | |EntrezGene=52822 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D394 | |UniProt=Q9D394 | ||
|association_with_transcript=-28bp_to_uc008xzy.1_5end | |association_with_transcript=-28bp_to_uc008xzy.1_5end | ||
|cluster_id=chr5:89012494..89012509,+ | |||
|description=CAGE_peak_3_at_Rufy3_5end | |description=CAGE_peak_3_at_Rufy3_5end | ||
|id=chr5:89012494..89012509,+ | |id=chr5:89012494..89012509,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.32e-16!33;CL:0000047!1.32e-16!33;CL:0000031!1.32e-16!33;CL:0000404!1.32e-16!33;CL:0000393!6.24e-15!39;CL:0000211!6.24e-15!39;CL:0000221!8.33e-14!44;CL:0000133!8.33e-14!44;CL:0002319!9.42e-14!43;CL:0000117!4.69e-13!23;CL:0000337!4.69e-13!23;CL:0000055!4.65e-12!50 | |ontology_enrichment_celltype=CL:0000540!1.32e-16!33;CL:0000047!1.32e-16!33;CL:0000031!1.32e-16!33;CL:0000404!1.32e-16!33;CL:0000393!6.24e-15!39;CL:0000211!6.24e-15!39;CL:0000221!8.33e-14!44;CL:0000133!8.33e-14!44;CL:0002319!9.42e-14!43;CL:0000117!4.69e-13!23;CL:0000337!4.69e-13!23;CL:0000055!4.65e-12!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.90e-18,33;CL:0000047,2.90e-18,33;CL:0000031,2.90e-18,33;CL:0000404,2.90e-18,33;CL:0000393,1.31e-16,39;CL:0000211,1.31e-16,39;CL:0000221,1.16e-14,44;CL:0000133,1.16e-14,44;CL:0002319,1.34e-14,43;CL:0000117,2.54e-14,23;CL:0000337,2.54e-14,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.72e-33!75;UBERON:0001016!3.72e-33!75;UBERON:0001017!3.80e-33!73;UBERON:0005743!3.80e-33!73;UBERON:0004121!1.33e-32!102;UBERON:0000924!1.33e-32!102;UBERON:0006601!1.33e-32!102;UBERON:0002346!6.23e-32!71;UBERON:0003075!6.23e-32!71;UBERON:0007284!6.23e-32!71;UBERON:0000033!1.14e-27!63;UBERON:0001049!4.76e-26!52;UBERON:0005068!4.76e-26!52;UBERON:0006241!4.76e-26!52;UBERON:0007135!4.76e-26!52;UBERON:0000955!1.84e-25!50;UBERON:0006238!1.84e-25!50;UBERON:0002616!8.22e-25!49;UBERON:0003056!1.87e-23!49;UBERON:0003080!1.80e-20!40;UBERON:0002780!9.50e-20!39;UBERON:0001890!9.50e-20!39;UBERON:0006240!9.50e-20!39;UBERON:0002020!4.98e-18!34;UBERON:0002791!1.19e-15!29;UBERON:0003528!1.19e-15!29;UBERON:0001893!1.19e-15!29;UBERON:0007811!2.13e-12!86;UBERON:0000956!5.26e-11!21;UBERON:0001869!5.26e-11!21;UBERON:0000203!5.26e-11!21;UBERON:0000153!5.98e-10!94;UBERON:0002619!4.03e-09!17;UBERON:0000468!4.13e-08!333;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10 | |ontology_enrichment_uberon=UBERON:0000073!3.72e-33!75;UBERON:0001016!3.72e-33!75;UBERON:0001017!3.80e-33!73;UBERON:0005743!3.80e-33!73;UBERON:0004121!1.33e-32!102;UBERON:0000924!1.33e-32!102;UBERON:0006601!1.33e-32!102;UBERON:0002346!6.23e-32!71;UBERON:0003075!6.23e-32!71;UBERON:0007284!6.23e-32!71;UBERON:0000033!1.14e-27!63;UBERON:0001049!4.76e-26!52;UBERON:0005068!4.76e-26!52;UBERON:0006241!4.76e-26!52;UBERON:0007135!4.76e-26!52;UBERON:0000955!1.84e-25!50;UBERON:0006238!1.84e-25!50;UBERON:0002616!8.22e-25!49;UBERON:0003056!1.87e-23!49;UBERON:0003080!1.80e-20!40;UBERON:0002780!9.50e-20!39;UBERON:0001890!9.50e-20!39;UBERON:0006240!9.50e-20!39;UBERON:0002020!4.98e-18!34;UBERON:0002791!1.19e-15!29;UBERON:0003528!1.19e-15!29;UBERON:0001893!1.19e-15!29;UBERON:0007811!2.13e-12!86;UBERON:0000956!5.26e-11!21;UBERON:0001869!5.26e-11!21;UBERON:0000203!5.26e-11!21;UBERON:0000153!5.98e-10!94;UBERON:0002619!4.03e-09!17;UBERON:0000468!4.13e-08!333;UBERON:0002021!1.79e-07!10;UBERON:0000411!1.79e-07!10;UBERON:0001950!1.79e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.08e-36,75;UBERON:0001017,5.28e-36,73;UBERON:0002346,1.46e-33,64;UBERON:0003075,1.46e-33,64;UBERON:0007284,1.46e-33,64;UBERON:0004121,9.32e-32,95;UBERON:0000924,9.32e-32,95;UBERON:0006601,9.32e-32,95;UBERON:0000073,8.09e-30,54;UBERON:0001049,2.94e-28,52;UBERON:0005068,2.94e-28,52;UBERON:0006241,2.94e-28,52;UBERON:0007135,2.94e-28,52;UBERON:0010371,3.53e-27,73;UBERON:0003056,2.17e-25,49;UBERON:0000955,3.41e-25,47;UBERON:0006238,3.41e-25,47;UBERON:0002616,1.73e-24,46;UBERON:0010314,4.36e-22,92;UBERON:0003080,4.55e-22,40;UBERON:0002780,2.87e-21,39;UBERON:0001890,2.87e-21,39;UBERON:0006240,2.87e-21,39;UBERON:0002020,2.36e-19,34;UBERON:0003528,1.03e-16,29;UBERON:0002791,1.03e-16,29;UBERON:0001893,1.03e-16,29;UBERON:0000956,1.40e-11,21;UBERON:0001869,1.40e-11,21;UBERON:0000203,1.40e-11,21;UBERON:0002619,1.71e-09,17;UBERON:0002021,3.97e-08,10;UBERON:0000411,3.97e-08,10;UBERON:0001950,3.97e-08,10 | |||
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| ||
|short_description=p3@Rufy3 | |short_description=p3@Rufy3 | ||
}} | }} |
Latest revision as of 07:30, 26 September 2015
Short description: | p3@Rufy3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rufy3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -28bp_to_uc008xzy.1_5end |
EntrezGene: | Rufy3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.90e-18 | 33 |
neuronal stem cell | 2.90e-18 | 33 |
neuroblast | 2.90e-18 | 33 |
electrically signaling cell | 2.90e-18 | 33 |
electrically responsive cell | 1.31e-16 | 39 |
electrically active cell | 1.31e-16 | 39 |
ectodermal cell | 1.16e-14 | 44 |
neurectodermal cell | 1.16e-14 | 44 |
neural cell | 1.34e-14 | 43 |
CNS neuron (sensu Vertebrata) | 2.54e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.54e-14 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.08e-36 | 75 |
central nervous system | 5.28e-36 | 73 |
neurectoderm | 1.46e-33 | 64 |
neural plate | 1.46e-33 | 64 |
presumptive neural plate | 1.46e-33 | 64 |
ectoderm-derived structure | 9.32e-32 | 95 |
ectoderm | 9.32e-32 | 95 |
presumptive ectoderm | 9.32e-32 | 95 |
regional part of nervous system | 8.09e-30 | 54 |
neural tube | 2.94e-28 | 52 |
neural rod | 2.94e-28 | 52 |
future spinal cord | 2.94e-28 | 52 |
neural keel | 2.94e-28 | 52 |
ecto-epithelium | 3.53e-27 | 73 |
pre-chordal neural plate | 2.17e-25 | 49 |
brain | 3.41e-25 | 47 |
future brain | 3.41e-25 | 47 |
regional part of brain | 1.73e-24 | 46 |
structure with developmental contribution from neural crest | 4.36e-22 | 92 |
anterior neural tube | 4.55e-22 | 40 |
regional part of forebrain | 2.87e-21 | 39 |
forebrain | 2.87e-21 | 39 |
future forebrain | 2.87e-21 | 39 |
gray matter | 2.36e-19 | 34 |
brain grey matter | 1.03e-16 | 29 |
regional part of telencephalon | 1.03e-16 | 29 |
telencephalon | 1.03e-16 | 29 |
cerebral cortex | 1.40e-11 | 21 |
cerebral hemisphere | 1.40e-11 | 21 |
pallium | 1.40e-11 | 21 |
regional part of cerebral cortex | 1.71e-09 | 17 |
occipital lobe | 3.97e-08 | 10 |
visual cortex | 3.97e-08 | 10 |
neocortex | 3.97e-08 | 10 |