FFCP PHASE1:Mm9::chr14:68742893..68742913,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=18040|HGNC=|MCL_coexpression_id=353|UniProt=P08553,D3YZ35|association_with_transcript=0bp_to_ENSMUST00000022638,ENSMUST00000111089_5end|description=CAGE_peak_1_at_Nefm_5end|id=chr14:68742893..68742913,-|ontology_enrichment_celltype=CL:0000540!1.04e-11!33;CL:0000047!1.04e-11!33;CL:0000031!1.04e-11!33;CL:0000404!1.04e-11!33;CL:0000117!3.50e-11!23;CL:0000337!3.50e-11!23;CL:0000221!1.48e-08!44;CL:0000133!1.48e-08!44;CL:0002319!3.39e-08!43;CL:0000393!1.07e-07!39;CL:0000211!1.07e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.37e-12,33;CL:0000047,2.37e-12,33;CL:0000031,2.37e-12,33;CL:0000404,2.37e-12,33;CL:0000117,8.67e-12,23;CL:0000337,8.67e-12,23;CL:0000221,7.63e-09,44;CL:0000133,7.63e-09,44;CL:0002319,1.83e-08,43;CL:0000393,3.66e-08,39;CL:0000211,3.66e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.80e-24!71;UBERON:0003075!1.80e-24!71;UBERON:0007284!1.80e-24!71;UBERON:0000073!6.27e-23!75;UBERON:0001016!6.27e-23!75;UBERON:0001017!1.36e-22!73;UBERON:0005743!1.36e-22!73;UBERON:0004121!1.89e-22!102;UBERON:0000924!1.89e-22!102;UBERON:0006601!1.89e-22!102;UBERON:0000033!8.68e-20!63;UBERON:0001049!1.12e-18!52;UBERON:0005068!1.12e-18!52;UBERON:0006241!1.12e-18!52;UBERON:0007135!1.12e-18!52;UBERON:0003056!1.01e-17!49;UBERON:0000955!6.32e-17!50;UBERON:0006238!6.32e-17!50;UBERON:0002616!1.67e-16!49;UBERON:0007811!3.28e-14!86;UBERON:0003080!4.60e-14!40;UBERON:0002020!9.58e-14!34;UBERON:0000153!1.44e-13!94;UBERON:0002780!1.99e-13!39;UBERON:0001890!1.99e-13!39;UBERON:0006240!1.99e-13!39;UBERON:0002791!1.82e-10!29;UBERON:0003528!1.82e-10!29;UBERON:0001893!1.82e-10!29;UBERON:0000468!5.45e-08!333;UBERON:0002021!4.08e-07!10;UBERON:0000411!4.08e-07!10;UBERON:0001950!4.08e-07!10;UBERON:0000956!7.06e-07!21;UBERON:0001869!7.06e-07!21;UBERON:0000203!7.06e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.96e-24,64;UBERON:0003075,1.96e-24,64;UBERON:0007284,1.96e-24,64;UBERON:0001016,4.56e-24,75;UBERON:0001017,1.04e-23,73;UBERON:0004121,9.26e-22,95;UBERON:0000924,9.26e-22,95;UBERON:0006601,9.26e-22,95;UBERON:0000073,3.18e-21,54;UBERON:0001049,7.72e-20,52;UBERON:0005068,7.72e-20,52;UBERON:0006241,7.72e-20,52;UBERON:0007135,7.72e-20,52;UBERON:0010371,8.24e-20,73;UBERON:0003056,1.62e-18,49;UBERON:0010314,2.44e-16,92;UBERON:0000955,6.46e-16,47;UBERON:0006238,6.46e-16,47;UBERON:0002616,1.77e-15,46;UBERON:0003080,1.24e-14,40;UBERON:0002020,2.79e-14,34;UBERON:0002780,5.85e-14,39;UBERON:0001890,5.85e-14,39;UBERON:0006240,5.85e-14,39;UBERON:0003528,8.19e-11,29;UBERON:0002791,8.19e-11,29;UBERON:0001893,8.19e-11,29;UBERON:0002021,1.81e-07,10;UBERON:0000411,1.81e-07,10;UBERON:0001950,1.81e-07,10;UBERON:0000956,5.08e-07,21;UBERON:0001869,5.08e-07,21;UBERON:0000203,5.08e-07,21|phase1_expression=56.8528407222019,0,0,0,0,1.51091344720701,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,36.1433983142047,0,0,0,0,1.14846392823004,0,0,0,0,0.221730510655305,0,0,0,0,0.498703936075477,0.408338712524738,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0.659058548203415,0,1.1198913730029,1.43752564364972,0,0,0,0.514518872071894,0,0,97.9211670560453,91.5154394140617,85.5672394733342,6.43804610931351,0,0,0.988866362566974,0.7104801149461,2.09720077362883,0.384218305321555,12.9612015385597,13.6355997715008,11.3575479129746,715.555715931528,455.210062901275,27.9279022210095,26.8367318851062,18.3843757322004,331.44880180816,353.4385518198,374.185515012209,78.8680000626559,75.2943306847831,78.137005583514,475.16946430035,115.929097666526,163.494125121187,630.505172913649,551.405519734926,443.817080510041,14.6151553133045,25.0897579554528,0,0,0,2.15881276655127,0,0,22.049773960685,0,0,0,54.9289337129054,0,0,0,0.216491041011214,0,0,4.33898742932428,0,1.33597925158342,86.9161487098341,62.1109575756768,36.8984795609694,37.8313827787083,28.9268219553834,1.50799909595611,0,0.86759614151947,0,1.29413479957927,0,0,0,103.351621345076,89.0148503957184,1.27728527604296,0,0,0,359.497534571574,200.842764637377,14.9528679014309,174.519617473046,176.699381015258,296.929115675611,236.872244078926,19.8586759508117,0,0,15.1518136238261,43.8505892784312,106.904478561565,98.3139228737207,57.7199452310789,40.3456439967374,47.786417666249,52.0981588552092,100.635611217477,2.37124792226126,3.59301552318857,3.87092473160687,6.1374805079721,5.28289773528636,4.179025998266,3.49829631893504,5.7719937377363,0,0,0,0.621377317606506,4.92504725960302,1.08037236876609,2.13070262026689,1.18058539048442,1.3884040159864,0.697601834251224,0.268273401399619,0.233530684734339,0.658239399653922,0.492502392237286,0.243206428637567,0,0.219550115291051,0.268412837520744,110.191933047603,20.5809224758569,1.32167513193519,1.05780226665418,35.4058495888488,28.5651106388339,12.1135413642768,5.24377164020691,6.89371935919098,5.32631753115166,0.949058123089023,4.94096864172033,4.52403375840485,3.18330355265841,2.14460495831032,2.69645822596266,1.08069024937347,1.39398891278057,3.60369011810855,14.2810640762161,0,3.46207257337034,2.71533482034676,2.17421041659988,0.442655759869801,0,0.31399745568275,0.123397163921801,0,0.333690211432188,0.786235980452812,0.224862112384854,0.405720242777006,0.241177159752417,0.25462585178142,0,0,0,0,0,0,0,0,0,0,22.9284608242287,4.07412441105065,2.37643120085263,0.938760993154008,1.34005005953453,0.714130922658041,0.585400943573396,0.472905432318573,0.44292937929755,0.159454768657487,0.163863314715738,0,0,0,0,0,0,993.808152024432,918.23635276332,0,0,17.9839685067266,16.7888660047555,22.8348801596767,10.2756583119597,12.6995244226965,12.4553673547086,9.71545684019746,12.5670018901864,11.0680577825027,53.33933852602,0,62.5010268872066,64.5032359040161,0.164970122972535,2.65490276679926,21.1219153454834,10.5813244937663,5.84675747243284,5.31543407185391,4.61152721915891,2.32585463851399,1.81766864738753,3.92147116223193,0.948110273807448,2.10837217149998,0,7.14923172082955,23.0478200360077,21.60290019172,19.7190072229065,12.945837055886,70.9907894056241,135.917491017352,57.5438753826593,0.938686832254841,0.21183207086382,15.2164594657924,0,0.645857706783622,0.663442174209714,0.238744688006273,0,1.1659233465194,1794.54607285771,0,2.47664241555867,0.925972636848558,0,0,0,0,0,0,0,24.1997035089569,7.5228202836934,2.80813886136683,3.76358932826044,3.27543845619266,3.50647300600534,2.97552440611209,0.785267825952089,1.42576470620972,0,0.56369293868419,0.299033092087958,0.165458490457098,0.194451188344048,0.904118764344118,0.168956125490778,1.29092962510329,7.42164993610516,1.67774951081137,0.241584120826006,0,8.21628913633263,49.0595021002197,32.1485295925909,16.49994451818,11.0996551313838,7.3512101269068,8.05309511783791,5.46451250545936,7.16861794631848,5.79171730577999,4.13387359061046,6.1398464866044,3.75226182397285,5.02570679380746,0,0.221985953374065,0,0.503653849092235,6.56844619709447,0.187682475451182,0.183151624267265,2.14368379079066,0,192.58037833242,189.653997440957,181.607877760289,179.071016002122,137.701586473899,146.546416093602,117.453915040334,124.738973293109,164.490694461266,161.541217266568,168.758227171871,102.549392464065,70.3422455707033,31.3607665018099,58.4820723732071,45.4093465871535,32.4480222590358,33.5837143299398,37.8684667318342,32.3452431057661,35.2336226847433,33.7641151081076,26.313263599037,34.2534565366051,29.8664438569189,29.0539151682675,40.907167058534,30.6725660537291,29.6701848578381,34.7389451517178,33.2583174813853,31.7681693025214,32.9041942127303,34.5924471584942,33.314720667027,33.3381555093205,32.5611791713535,30.7791562382276,30.6917297291648,37.5965322010685,32.8619000203962,34.1810553843205,35.1938697125933,32.2268629666809,31.2508709789449,34.7236703333745,29.241451055676,31.3711738910516,53.9433096434138,47.2065636915763,49.3878489871498|short_description=p1@Nefm}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18040 | |||
|HGNC= | |||
|MCL_coexpression_id=353 | |||
|TSSclassifier=NA | |||
|UniProt=P08553,D3YZ35 | |||
|association_with_transcript=0bp_to_ENSMUST00000022638,ENSMUST00000111089_5end | |||
|cluster_id=chr14:68742893..68742913,- | |||
|description=CAGE_peak_1_at_Nefm_5end | |||
|id=chr14:68742893..68742913,- | |||
|ontology_enrichment_celltype=CL:0000540!1.04e-11!33;CL:0000047!1.04e-11!33;CL:0000031!1.04e-11!33;CL:0000404!1.04e-11!33;CL:0000117!3.50e-11!23;CL:0000337!3.50e-11!23;CL:0000221!1.48e-08!44;CL:0000133!1.48e-08!44;CL:0002319!3.39e-08!43;CL:0000393!1.07e-07!39;CL:0000211!1.07e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.37e-12,33;CL:0000047,2.37e-12,33;CL:0000031,2.37e-12,33;CL:0000404,2.37e-12,33;CL:0000117,8.67e-12,23;CL:0000337,8.67e-12,23;CL:0000221,7.63e-09,44;CL:0000133,7.63e-09,44;CL:0002319,1.83e-08,43;CL:0000393,3.66e-08,39;CL:0000211,3.66e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.80e-24!71;UBERON:0003075!1.80e-24!71;UBERON:0007284!1.80e-24!71;UBERON:0000073!6.27e-23!75;UBERON:0001016!6.27e-23!75;UBERON:0001017!1.36e-22!73;UBERON:0005743!1.36e-22!73;UBERON:0004121!1.89e-22!102;UBERON:0000924!1.89e-22!102;UBERON:0006601!1.89e-22!102;UBERON:0000033!8.68e-20!63;UBERON:0001049!1.12e-18!52;UBERON:0005068!1.12e-18!52;UBERON:0006241!1.12e-18!52;UBERON:0007135!1.12e-18!52;UBERON:0003056!1.01e-17!49;UBERON:0000955!6.32e-17!50;UBERON:0006238!6.32e-17!50;UBERON:0002616!1.67e-16!49;UBERON:0007811!3.28e-14!86;UBERON:0003080!4.60e-14!40;UBERON:0002020!9.58e-14!34;UBERON:0000153!1.44e-13!94;UBERON:0002780!1.99e-13!39;UBERON:0001890!1.99e-13!39;UBERON:0006240!1.99e-13!39;UBERON:0002791!1.82e-10!29;UBERON:0003528!1.82e-10!29;UBERON:0001893!1.82e-10!29;UBERON:0000468!5.45e-08!333;UBERON:0002021!4.08e-07!10;UBERON:0000411!4.08e-07!10;UBERON:0001950!4.08e-07!10;UBERON:0000956!7.06e-07!21;UBERON:0001869!7.06e-07!21;UBERON:0000203!7.06e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.96e-24,64;UBERON:0003075,1.96e-24,64;UBERON:0007284,1.96e-24,64;UBERON:0001016,4.56e-24,75;UBERON:0001017,1.04e-23,73;UBERON:0004121,9.26e-22,95;UBERON:0000924,9.26e-22,95;UBERON:0006601,9.26e-22,95;UBERON:0000073,3.18e-21,54;UBERON:0001049,7.72e-20,52;UBERON:0005068,7.72e-20,52;UBERON:0006241,7.72e-20,52;UBERON:0007135,7.72e-20,52;UBERON:0010371,8.24e-20,73;UBERON:0003056,1.62e-18,49;UBERON:0010314,2.44e-16,92;UBERON:0000955,6.46e-16,47;UBERON:0006238,6.46e-16,47;UBERON:0002616,1.77e-15,46;UBERON:0003080,1.24e-14,40;UBERON:0002020,2.79e-14,34;UBERON:0002780,5.85e-14,39;UBERON:0001890,5.85e-14,39;UBERON:0006240,5.85e-14,39;UBERON:0003528,8.19e-11,29;UBERON:0002791,8.19e-11,29;UBERON:0001893,8.19e-11,29;UBERON:0002021,1.81e-07,10;UBERON:0000411,1.81e-07,10;UBERON:0001950,1.81e-07,10;UBERON:0000956,5.08e-07,21;UBERON:0001869,5.08e-07,21;UBERON:0000203,5.08e-07,21 | |||
|phase1_expression=56.8528407222019,0,0,0,0,1.51091344720701,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,36.1433983142047,0,0,0,0,1.14846392823004,0,0,0,0,0.221730510655305,0,0,0,0,0.498703936075477,0.408338712524738,0,0,0,0,0,0,0,0.101376931219515,0,0,0,0.659058548203415,0,1.1198913730029,1.43752564364972,0,0,0,0.514518872071894,0,0,97.9211670560453,91.5154394140617,85.5672394733342,6.43804610931351,0,0,0.988866362566974,0.7104801149461,2.09720077362883,0.384218305321555,12.9612015385597,13.6355997715008,11.3575479129746,715.555715931528,455.210062901275,27.9279022210095,26.8367318851062,18.3843757322004,331.44880180816,353.4385518198,374.185515012209,78.8680000626559,75.2943306847831,78.137005583514,475.16946430035,115.929097666526,163.494125121187,630.505172913649,551.405519734926,443.817080510041,14.6151553133045,25.0897579554528,0,0,0,2.15881276655127,0,0,22.049773960685,0,0,0,54.9289337129054,0,0,0,0.216491041011214,0,0,4.33898742932428,0,1.33597925158342,86.9161487098341,62.1109575756768,36.8984795609694,37.8313827787083,28.9268219553834,1.50799909595611,0,0.86759614151947,0,1.29413479957927,0,0,0,103.351621345076,89.0148503957184,1.27728527604296,0,0,0,359.497534571574,200.842764637377,14.9528679014309,174.519617473046,176.699381015258,296.929115675611,236.872244078926,19.8586759508117,0,0,15.1518136238261,43.8505892784312,106.904478561565,98.3139228737207,57.7199452310789,40.3456439967374,47.786417666249,52.0981588552092,100.635611217477,2.37124792226126,3.59301552318857,3.87092473160687,6.1374805079721,5.28289773528636,4.179025998266,3.49829631893504,5.7719937377363,0,0,0,0.621377317606506,4.92504725960302,1.08037236876609,2.13070262026689,1.18058539048442,1.3884040159864,0.697601834251224,0.268273401399619,0.233530684734339,0.658239399653922,0.492502392237286,0.243206428637567,0,0.219550115291051,0.268412837520744,110.191933047603,20.5809224758569,1.32167513193519,1.05780226665418,35.4058495888488,28.5651106388339,12.1135413642768,5.24377164020691,6.89371935919098,5.32631753115166,0.949058123089023,4.94096864172033,4.52403375840485,3.18330355265841,2.14460495831032,2.69645822596266,1.08069024937347,1.39398891278057,3.60369011810855,14.2810640762161,0,3.46207257337034,2.71533482034676,2.17421041659988,0.442655759869801,0,0.31399745568275,0.123397163921801,0,0.333690211432188,0.786235980452812,0.224862112384854,0.405720242777006,0.241177159752417,0.25462585178142,0,0,0,0,0,0,0,0,0,0,22.9284608242287,4.07412441105065,2.37643120085263,0.938760993154008,1.34005005953453,0.714130922658041,0.585400943573396,0.472905432318573,0.44292937929755,0.159454768657487,0.163863314715738,0,0,0,0,0,0,993.808152024432,918.23635276332,0,0,17.9839685067266,16.7888660047555,22.8348801596767,10.2756583119597,12.6995244226965,12.4553673547086,9.71545684019746,12.5670018901864,11.0680577825027,53.33933852602,0,62.5010268872066,64.5032359040161,0.164970122972535,2.65490276679926,21.1219153454834,10.5813244937663,5.84675747243284,5.31543407185391,4.61152721915891,2.32585463851399,1.81766864738753,3.92147116223193,0.948110273807448,2.10837217149998,0,7.14923172082955,23.0478200360077,21.60290019172,19.7190072229065,12.945837055886,70.9907894056241,135.917491017352,57.5438753826593,0.938686832254841,0.21183207086382,15.2164594657924,0,0.645857706783622,0.663442174209714,0.238744688006273,0,1.1659233465194,1794.54607285771,0,2.47664241555867,0.925972636848558,0,0,0,0,0,0,0,24.1997035089569,7.5228202836934,2.80813886136683,3.76358932826044,3.27543845619266,3.50647300600534,2.97552440611209,0.785267825952089,1.42576470620972,0,0.56369293868419,0.299033092087958,0.165458490457098,0.194451188344048,0.904118764344118,0.168956125490778,1.29092962510329,7.42164993610516,1.67774951081137,0.241584120826006,0,8.21628913633263,49.0595021002197,32.1485295925909,16.49994451818,11.0996551313838,7.3512101269068,8.05309511783791,5.46451250545936,7.16861794631848,5.79171730577999,4.13387359061046,6.1398464866044,3.75226182397285,5.02570679380746,0,0.221985953374065,0,0.503653849092235,6.56844619709447,0.187682475451182,0.183151624267265,2.14368379079066,0,192.58037833242,189.653997440957,181.607877760289,179.071016002122,137.701586473899,146.546416093602,117.453915040334,124.738973293109,164.490694461266,161.541217266568,168.758227171871,102.549392464065,70.3422455707033,31.3607665018099,58.4820723732071,45.4093465871535,32.4480222590358,33.5837143299398,37.8684667318342,32.3452431057661,35.2336226847433,33.7641151081076,26.313263599037,34.2534565366051,29.8664438569189,29.0539151682675,40.907167058534,30.6725660537291,29.6701848578381,34.7389451517178,33.2583174813853,31.7681693025214,32.9041942127303,34.5924471584942,33.314720667027,33.3381555093205,32.5611791713535,30.7791562382276,30.6917297291648,37.5965322010685,32.8619000203962,34.1810553843205,35.1938697125933,32.2268629666809,31.2508709789449,34.7236703333745,29.241451055676,31.3711738910516,53.9433096434138,47.2065636915763,49.3878489871498 | |||
|short_description=p1@Nefm | |||
}} |
Latest revision as of 07:34, 26 September 2015
Short description: | p1@Nefm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nefm_5end |
Coexpression cluster: | MCL_coexpression_mm9:353 |
Association with transcript: | 0bp_to_ENSMUST00000022638, ENSMUST00000111089_5end |
EntrezGene: | Nefm |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.37e-12 | 33 |
neuronal stem cell | 2.37e-12 | 33 |
neuroblast | 2.37e-12 | 33 |
electrically signaling cell | 2.37e-12 | 33 |
CNS neuron (sensu Vertebrata) | 8.67e-12 | 23 |
neuroblast (sensu Vertebrata) | 8.67e-12 | 23 |
ectodermal cell | 7.63e-09 | 44 |
neurectodermal cell | 7.63e-09 | 44 |
neural cell | 1.83e-08 | 43 |
electrically responsive cell | 3.66e-08 | 39 |
electrically active cell | 3.66e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.96e-24 | 64 |
neural plate | 1.96e-24 | 64 |
presumptive neural plate | 1.96e-24 | 64 |
nervous system | 4.56e-24 | 75 |
central nervous system | 1.04e-23 | 73 |
ectoderm-derived structure | 9.26e-22 | 95 |
ectoderm | 9.26e-22 | 95 |
presumptive ectoderm | 9.26e-22 | 95 |
regional part of nervous system | 3.18e-21 | 54 |
neural tube | 7.72e-20 | 52 |
neural rod | 7.72e-20 | 52 |
future spinal cord | 7.72e-20 | 52 |
neural keel | 7.72e-20 | 52 |
ecto-epithelium | 8.24e-20 | 73 |
pre-chordal neural plate | 1.62e-18 | 49 |
structure with developmental contribution from neural crest | 2.44e-16 | 92 |
brain | 6.46e-16 | 47 |
future brain | 6.46e-16 | 47 |
regional part of brain | 1.77e-15 | 46 |
anterior neural tube | 1.24e-14 | 40 |
gray matter | 2.79e-14 | 34 |
regional part of forebrain | 5.85e-14 | 39 |
forebrain | 5.85e-14 | 39 |
future forebrain | 5.85e-14 | 39 |
brain grey matter | 8.19e-11 | 29 |
regional part of telencephalon | 8.19e-11 | 29 |
telencephalon | 8.19e-11 | 29 |
occipital lobe | 1.81e-07 | 10 |
visual cortex | 1.81e-07 | 10 |
neocortex | 1.81e-07 | 10 |
cerebral cortex | 5.08e-07 | 21 |
cerebral hemisphere | 5.08e-07 | 21 |
pallium | 5.08e-07 | 21 |