FFCP PHASE1:Mm9::chr2:180701923..180701994,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=228998 | |EntrezGene=228998 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q9EPJ9,Q3TGS9,Q6PB94,Q05DE0 | |UniProt=Q9EPJ9,Q3TGS9,Q6PB94,Q05DE0 | ||
|association_with_transcript=0bp_to_ENSMUST00000029092,ENSMUST00000098981,ENSMUST00000108860,ENSMUST00000108861,ENSMUST00000108862,ENSMUST00000132627,ENSMUST00000136590,ENSMUST00000145629,NM_001177707,NM_001177708,NM_001177709,NM_001177710,NM_145760,uc008okj.2,uc008okk.2,uc008okl.2,uc008okm.2,uc008okn.2_5end | |association_with_transcript=0bp_to_ENSMUST00000029092,ENSMUST00000098981,ENSMUST00000108860,ENSMUST00000108861,ENSMUST00000108862,ENSMUST00000132627,ENSMUST00000136590,ENSMUST00000145629,NM_001177707,NM_001177708,NM_001177709,NM_001177710,NM_145760,uc008okj.2,uc008okk.2,uc008okl.2,uc008okm.2,uc008okn.2_5end | ||
|cluster_id=chr2:180701923..180701994,+ | |||
|description=CAGE_peak_1_at_Arfgap1_5end | |description=CAGE_peak_1_at_Arfgap1_5end | ||
|id=chr2:180701923..180701994,+ | |id=chr2:180701923..180701994,+ | ||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.38e-11!73;UBERON:0005743!3.38e-11!73;UBERON:0000073!3.90e-10!75;UBERON:0001016!3.90e-10!75;UBERON:0001049!2.56e-09!52;UBERON:0005068!2.56e-09!52;UBERON:0006241!2.56e-09!52;UBERON:0007135!2.56e-09!52;UBERON:0000955!3.17e-09!50;UBERON:0006238!3.17e-09!50;UBERON:0002616!4.48e-09!49;UBERON:0002021!4.92e-08!10;UBERON:0000411!4.92e-08!10;UBERON:0001950!4.92e-08!10;UBERON:0002020!5.74e-08!34;UBERON:0003080!8.36e-08!40;UBERON:0002780!1.23e-07!39;UBERON:0001890!1.23e-07!39;UBERON:0006240!1.23e-07!39;UBERON:0000033!7.65e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.38e-11,73;UBERON:0000073,1.34e-10,54;UBERON:0001016,3.90e-10,75;UBERON:0001049,2.56e-09,52;UBERON:0005068,2.56e-09,52;UBERON:0006241,2.56e-09,52;UBERON:0007135,2.56e-09,52;UBERON:0000955,3.78e-08,47;UBERON:0006238,3.78e-08,47;UBERON:0004121,4.05e-08,95;UBERON:0000924,4.05e-08,95;UBERON:0006601,4.05e-08,95;UBERON:0002021,4.92e-08,10;UBERON:0000411,4.92e-08,10;UBERON:0001950,4.92e-08,10;UBERON:0002616,5.31e-08,46;UBERON:0002020,5.74e-08,34;UBERON:0003080,8.36e-08,40;UBERON:0002780,1.23e-07,39;UBERON:0001890,1.23e-07,39;UBERON:0006240,1.23e-07,39;UBERON:0002346,3.36e-07,64;UBERON:0003075,3.36e-07,64;UBERON:0007284,3.36e-07,64 | |||
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|phase1_expression=27.225304007815,42.2260243243627,56.874904923692,55.9558790917636,46.5833028850103,21.32066753281,24.5293272625302,26.21203465864,19.42884365693,13.3416780003536,22.9432077422177,18.7464573639041,28.2481204386489,27.5374267619842,17.6548173762301,15.3881203216268,25.8837894907414,24.4483178152634,24.9548269162445,28.434106670468,27.5540260089466,13.9007331681239,14.8883879809193,22.2389467682835,25.693839479523,34.4539178469012,27.5687677541808,24.1327780608196,25.2731147876977,17.8941392129551,21.2861290229093,21.5910428976275,23.3724619282137,15.8481681015439,15.8868390863201,12.4675984018869,15.3127017196777,43.9458212273753,26.5654017138092,37.1701858221397,52.9408339227913,51.2284113718834,38.3553178894611,17.877348152532,17.9437168258541,20.0065959856233,28.9484797408774,26.1630187656536,25.2639110144643,16.9154012194627,24.2176509411877,33.0630898039435,32.5498255752009,42.071004236658,43.0200062902354,44.7631418702548,34.097479352712,35.5813743671435,28.5266209812033,30.6814767977779,34.8607271928399,41.6778774445032,30.2360230677787,33.7462393980525,27.6882581518753,31.2611250576284,33.5552123780613,26.5110630671873,28.5146433848314,28.4862529879867,24.1873705554089,37.7059299413021,37.5476519617743,24.3756690437759,31.8206963780545,33.0918763179608,38.540558349786,44.179818977475,37.0191745147547,32.5759130693579,31.6547246864337,26.5665818983948,36.0146068711781,43.895483582471,39.7275444219706,35.6500588423138,37.0166370077668,35.4158947068071,22.4906794199557,17.6837450649878,28.4067198927644,18.9293252935905,25.1589393471868,23.2072372404261,25.9910566979068,21.9533174677694,16.8533304158102,24.2011058060842,26.2383864648897,30.0338638333789,25.0701287202491,39.7812079984385,73.8935195149272,63.9960032837998,20.9996309780878,15.9616715249312,18.1988800205322,15.4148237620731,24.8580368301285,21.3756680253348,27.9311376093479,25.2706346999077,20.0635482612771,23.3620092856565,30.4554751481475,18.3473223341326,35.3488803860155,18.7979163995885,23.8844849026466,48.0447544343805,35.1138014352026,32.9715172131951,24.2309289583559,37.1831612204665,45.2404886717063,28.1002760729451,17.1335628043466,19.196887391789,13.0882333885257,33.1037313084658,42.5475560621323,34.9319098873763,44.8466746096073,53.1888151247088,29.7136903720171,40.2358332408039,51.2252000167091,31.5993705349636,60.9061847825156,23.3590460033986,19.6481868873683,28.2779588453172,20.5270827978098,26.0719334855787,31.7730451036701,27.1601087003882,25.8616759784852,26.9051505568576,16.8143034487617,27.9876998648373,32.9028602186584,37.9208617099704,41.4290401346141,46.6657903139703,40.3332987359569,29.2580372223185,15.4486901208912,17.2423097766859,17.3339734631312,27.9619792922928,21.8109235782419,24.8485644816201,30.7768156260773,26.7599355176469,19.2833891109223,24.8811320882936,24.4128795273653,28.7242742223237,28.4688540350321,25.938459324497,19.6186519100971,20.7603982143972,19.9790604914856,18.9231050452124,38.9036404843635,24.2854885215111,43.2848605708775,22.4782981664013,21.1155368029882,19.9723537799977,26.4178295710291,28.0340099226446,23.7944506914011,30.0556489257843,19.455691523325,31.7868982617341,28.6522138032307,24.8695590051439,30.4143975905827,25.1669434423182,24.8558757355898,28.8754846218832,23.8981555200883,22.1642114462874,28.1769339182701,22.6052973908299,18.6194387680921,28.61541451525,22.9548629761054,16.8275568696746,15.6998727841375,18.0159859325829,19.5658733877518,16.017130148745,16.3143965943958,18.6635553279429,18.8659912891308,24.3588931349941,25.462585178142,23.5910832709665,19.6183624397793,23.8868429473631,37.3797336971122,26.0498663367952,19.6583734062173,18.185679212192,20.8100999685418,14.9557491622644,21.985629629826,30.1291344715071,26.4003261836082,25.292017780503,26.9893785531777,25.1259386162724,26.8989314201196,30.8311163615322,27.270879930371,27.2401568267993,34.9205943359897,23.9240439484977,24.866637388689,26.6154267789981,34.6819953060326,26.6513785071168,22.1293922858566,33.9402197954821,25.8486449880345,29.5373450212352,16.8852993737976,22.7223834483936,25.2406575533005,26.9402733564681,38.560788194171,36.3232572887879,40.3265600089133,42.7445561491137,23.074209995469,29.8100975069538,32.0183100136684,32.7747742750243,30.8009984901943,45.0505977278156,47.8887660499514,34.9736660701775,43.8058956521877,25.4919667962731,27.5114436837923,26.9705264050934,34.2550195741696,39.6591340847666,39.7979571479061,35.989839218273,36.3627325952416,41.4008152895919,39.0048851727495,36.0974401368654,59.2364914011591,20.5269647195694,26.2598128078992,28.2924886241702,31.743901821967,36.3872387908224,38.3399218002942,71.5492630419308,30.2726503402186,45.1202310939937,27.3455213588153,32.647478082413,34.8763161663156,26.296435268676,23.9938411446304,24.9494167612493,36.1436237421015,27.2575193955449,15.3783792718067,28.6877746468879,20.1862034832986,17.706634958441,18.0436380591753,16.7008066440762,23.9669586291336,25.3312128705821,25.8433951014272,21.9574242143476,22.7761915378417,3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| ||
|short_description=p1@Arfgap1 | |short_description=p1@Arfgap1 | ||
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Latest revision as of 07:50, 26 September 2015
Short description: | p1@Arfgap1 |
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Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arfgap1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000029092, ENSMUST00000098981, ENSMUST00000108860, ENSMUST00000108861, ENSMUST00000108862, ENSMUST00000132627, ENSMUST00000136590, ENSMUST00000145629, NM_001177707, NM_001177708, NM_001177709, NM_001177710, NM_145760, uc008okj.2, uc008okk.2, uc008okl.2, uc008okm.2, uc008okn.2_5end |
EntrezGene: | Arfgap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.38e-11 | 73 |
regional part of nervous system | 1.34e-10 | 54 |
nervous system | 3.90e-10 | 75 |
neural tube | 2.56e-09 | 52 |
neural rod | 2.56e-09 | 52 |
future spinal cord | 2.56e-09 | 52 |
neural keel | 2.56e-09 | 52 |
brain | 3.78e-08 | 47 |
future brain | 3.78e-08 | 47 |
ectoderm-derived structure | 4.05e-08 | 95 |
ectoderm | 4.05e-08 | 95 |
presumptive ectoderm | 4.05e-08 | 95 |
occipital lobe | 4.92e-08 | 10 |
visual cortex | 4.92e-08 | 10 |
neocortex | 4.92e-08 | 10 |
regional part of brain | 5.31e-08 | 46 |
gray matter | 5.74e-08 | 34 |
anterior neural tube | 8.36e-08 | 40 |
regional part of forebrain | 1.23e-07 | 39 |
forebrain | 1.23e-07 | 39 |
future forebrain | 1.23e-07 | 39 |
neurectoderm | 3.36e-07 | 64 |
neural plate | 3.36e-07 | 64 |
presumptive neural plate | 3.36e-07 | 64 |