FFCP PHASE1:Mm9::chr5:92471656..92471727,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=53886 | |EntrezGene=53886 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=733 | |||
|TSSclassifier=NA | |||
|UniProt=Q9QUK0 | |UniProt=Q9QUK0 | ||
|association_with_transcript=0bp_to_ENSMUST00000113140,ENSMUST00000113143,uc008ycd.1_5end | |association_with_transcript=0bp_to_ENSMUST00000113140,ENSMUST00000113143,uc008ycd.1_5end | ||
|cluster_id=chr5:92471656..92471727,- | |||
|description=CAGE_peak_1_at_Cdkl2_5end | |description=CAGE_peak_1_at_Cdkl2_5end | ||
|id=chr5:92471656..92471727,- | |id=chr5:92471656..92471727,- | ||
|ontology_enrichment_celltype=CL:0000540!5.25e-07!33;CL:0000047!5.25e-07!33;CL:0000031!5.25e-07!33;CL:0000404!5.25e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.16e-07,33;CL:0000047,3.16e-07,33;CL:0000031,3.16e-07,33;CL:0000404,3.16e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.33e-18!102;UBERON:0000924!6.33e-18!102;UBERON:0006601!6.33e-18!102;UBERON:0001017!1.19e-17!73;UBERON:0005743!1.19e-17!73;UBERON:0000073!1.83e-17!75;UBERON:0001016!1.83e-17!75;UBERON:0001049!2.30e-15!52;UBERON:0005068!2.30e-15!52;UBERON:0006241!2.30e-15!52;UBERON:0007135!2.30e-15!52;UBERON:0000955!4.21e-14!50;UBERON:0006238!4.21e-14!50;UBERON:0002346!9.62e-14!71;UBERON:0003075!9.62e-14!71;UBERON:0007284!9.62e-14!71;UBERON:0002616!1.15e-13!49;UBERON:0000033!2.83e-13!63;UBERON:0003080!3.35e-11!40;UBERON:0002020!1.04e-10!34;UBERON:0002780!1.05e-10!39;UBERON:0001890!1.05e-10!39;UBERON:0006240!1.05e-10!39;UBERON:0003056!1.69e-09!49;UBERON:0002791!3.98e-08!29;UBERON:0003528!3.98e-08!29;UBERON:0001893!3.98e-08!29;UBERON:0002021!7.81e-08!10;UBERON:0000411!7.81e-08!10;UBERON:0001950!7.81e-08!10;UBERON:0007023!8.46e-08!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.60e-19,95;UBERON:0000924,8.60e-19,95;UBERON:0006601,8.60e-19,95;UBERON:0001017,4.40e-18,73;UBERON:0001016,6.85e-18,75;UBERON:0010371,3.30e-17,73;UBERON:0000073,6.79e-17,54;UBERON:0001049,9.20e-16,52;UBERON:0005068,9.20e-16,52;UBERON:0006241,9.20e-16,52;UBERON:0007135,9.20e-16,52;UBERON:0002346,9.38e-15,64;UBERON:0003075,9.38e-15,64;UBERON:0007284,9.38e-15,64;UBERON:0000955,8.19e-13,47;UBERON:0006238,8.19e-13,47;UBERON:0002616,2.26e-12,46;UBERON:0003080,1.68e-11,40;UBERON:0002020,5.52e-11,34;UBERON:0002780,5.53e-11,39;UBERON:0001890,5.53e-11,39;UBERON:0006240,5.53e-11,39;UBERON:0003056,8.19e-10,49;UBERON:0003528,2.63e-08,29;UBERON:0002791,2.63e-08,29;UBERON:0001893,2.63e-08,29;UBERON:0002021,4.35e-08,10;UBERON:0000411,4.35e-08,10;UBERON:0001950,4.35e-08,10;UBERON:0007023,8.59e-08,51;UBERON:0010314,4.69e-07,92 | |||
|phase1_expression=16.0148847104794,2.79180326111489,0.454999239389536,2.11724947914781,1.50268718983904,1.84667199103079,1.16806320297763,1.29123323441576,0.422366166455,0.234064526321993,0,0,0.513602189793617,0.874204024189974,0,0,0,0.157731082679119,0.411343300817216,0.42438965179803,12.7564935226605,0,0.261199789138935,1.43993180514066,1.37645568640302,1.72269589234506,0.430761996159075,1.07735616342945,2.09025761402011,1.00812051903972,1.33038306393183,0,0,0,2.02196133825892,0.498703936075477,0.816677425049476,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0,1.38486499773135,1.31790010585369,0.734187008646726,1.56478268869608,0.436050312760893,0.439372365468944,0.388859798148567,2.37976916763116,1.43752564364972,0.503347818173209,0,0,0.514518872071894,0.573066879877513,1.03134418455488,3.84401275633236,2.11596391708813,4.43681982454325,2.03306719241479,1.77858959222228,0.449949858640699,0,1.4209602298922,0.898800331555214,0,1.76272340924412,1.89008313664367,2.3135745748652,13.4255962669788,12.8103753751936,1.22490799214954,1.15014565221884,3.67687514644008,15.4162233399144,12.3856717942632,15.2070467923681,2.50583946687368,3.65950574409639,2.08365348222704,11.1673199600552,10.1297269805702,9.93188610549266,24.7488011797881,19.5049202694771,9.13357284543973,1.28734528666413,2.87171928405785,5.50742528533188,0.860423876981386,1.3599426674155,0,3.89865850468601,3.13618820968135,3.37066608316204,1.87473354835864,1.03914401841148,1.06001872353102,16.9012103732017,2.56652954828636,0,0,3.68034769719064,5.82727690592727,3.0331466700887,3.19714863213368,1.03575153458869,3.41416919849097,1.21439728736295,2.13125834818499,1.38369298353635,2.71300752994721,1.88141931417128,1.88499886994513,3.95511948374998,4.916378135277,0,0.161766849947409,0.441683036920787,0.484875253135222,1.86391761218122,8.78342391034641,7.95897485891129,1.27728527604296,0,0,0,12.5824137100051,16.9275223042892,10.0523481690292,20.5112697826886,20.4572365864264,11.0127663616567,16.2241263067758,0.203678727700633,0.995255764880744,3.53811861807145,5.47148825304832,0.520481771850815,0,1.0803727788321,1.05493372485001,1.63287597963187,2.17793324484245,2.15513966487376,8.79591460512653,0,0.378212160335639,0.527853372491847,0.219195732427575,0,1.0447564995665,0.823128545631774,1.19420560091096,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0,0.393528463494808,0.308534225774757,0,0,0.583826711835847,0.16455984991348,1.14917224855367,0.648550476366846,0.584799949701329,0.878200461164203,0.671032093801859,19.1363853193356,12.0398396483763,2.64335026387038,0.793351699990633,1.06644125267617,0,0.902072229254653,2.21851877085677,0.889512175379481,2.47293313946327,0.474529061544512,2.14108641141214,3.01602250560323,1.59165177632921,2.14460495831032,2.69645822596266,1.29682829924817,1.59313018603494,0.189667900953082,1.25673363870702,0,1.01825663922657,0.969762435838129,1.82353131714828,2.52946148497029,5.75679577120448,4.55296310739987,3.57851775373222,0.889357881261447,0,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,1.72617682470486,0.324270453550071,0.274561413188081,1.43768206527355,0.372140947668503,0.624075346229121,0.252578877947112,1.79397413521912,0,9.79191907883005,0,0.651859905768103,1.18821560042632,0.938760993154008,3.68513766371995,3.09456733151818,4.29294025287157,3.31033802623001,2.6575762757853,2.71073106717728,6.55453258862952,6.38934432903814,5.06271705035291,1.50791283939272,0,1.47529281905711,2.48343071674259,11.559642479121,11.3695335994437,0.327869890753351,0.757412781613119,3.15508219416257,7.41833614163613,3.87762115919038,2.86762557543062,3.11918143715352,1.13230612315533,1.21443210502468,4.09158201075837,4.34816555741176,7.71171159412337,3.69044221541498,0.712262414669021,1.30309567482861,5.93892442701128,5.30980553359851,2.42780636154981,0.604647113929502,2.45186603682668,1.18120757152309,2.15204603560749,3.10113951801865,3.99887102425256,3.56497378384721,3.79244109522979,2.10837217149998,2.06271086496374,23.8307724027652,1.62054984628179,1.4229455216103,5.35842587578981,10.6404140185364,8.20496560969525,12.176627524557,2.13125464380219,6.10146440965647,6.77862626764225,3.74898276693435,5.60613260001032,2.74489525383039,4.04096597018644,5.01363844813173,5.41664969158702,0.874442509889552,15.7611506708933,0.170870880797853,0.206386867963223,0.370389054739423,0,0,0.228778173206523,0,0,0,4.77335309007557,0.474503990371703,1.21991680276109,2.26811215725783,1.67270636811575,3.71216358368502,2.83215127408124,2.14898984885873,5.23511883968059,1.94422459937689,1.86401793926078,49.6049786042087,0.149516546043979,0.330916980914195,2.13896307178452,1.42075805825504,2.36538575687089,0.821500670520278,2.47388331203505,5.55754525456268,45.9009829569411,42.0523809136484,0.632022241256357,0.405450430580328,1.1298205288131,1.68897069871134,1.25318686967237,0.993406773906324,0.600977247599844,0.738447635872886,0.504832249740738,0.990688486514998,0.705783295957884,0.877120926657772,1.25075394132428,0.818138315270983,2.49403421976732,2.88581739386284,5.83140067961592,6.2117308054709,6.76163579112667,6.00583921443782,2.56412273974171,1.71494703263253,9.5298699766719,35.0146142422581,37.7466693935885,34.9466263198032,32.6521046453006,20.5524755931193,16.6186657425734,22.9507650078814,18.463169332193,24.0165476761628,18.6393712230655,0.31136204275253,0,0.853668028770671,2.18796045361465,1.04806581313991,3.49302666055027,4.66718128383392,3.09052585858341,5.45562656306086,2.27427490587418,4.81610669791456,4.33840585187975,3.7456602987953,2.56100609619477,2.69946704091382,4.28664322154766,3.36064545240081,3.27945674788299,1.23625770240992,3.67997300335993,2.05721551431249,2.66213709239006,3.81497903915713,3.34296758254356,3.76437521661322,3.38458431566706,5.85369513192872,3.94604567156764,2.71608227691724,3.92799590160417,2.84724043498018,3.74317033027141,3.27384834535751,3.25367366490529,2.3148793317737,5.74564329257276,4.21076895201735,2.79332370262788,1.53030665655075,1.54413993383661,3.94175320554716 | |phase1_expression=16.0148847104794,2.79180326111489,0.454999239389536,2.11724947914781,1.50268718983904,1.84667199103079,1.16806320297763,1.29123323441576,0.422366166455,0.234064526321993,0,0,0.513602189793617,0.874204024189974,0,0,0,0.157731082679119,0.411343300817216,0.42438965179803,12.7564935226605,0,0.261199789138935,1.43993180514066,1.37645568640302,1.72269589234506,0.430761996159075,1.07735616342945,2.09025761402011,1.00812051903972,1.33038306393183,0,0,0,2.02196133825892,0.498703936075477,0.816677425049476,0.418531630736908,0,0.523523743973798,0.588231488031014,0,0,1.38486499773135,1.31790010585369,0.734187008646726,1.56478268869608,0.436050312760893,0.439372365468944,0.388859798148567,2.37976916763116,1.43752564364972,0.503347818173209,0,0,0.514518872071894,0.573066879877513,1.03134418455488,3.84401275633236,2.11596391708813,4.43681982454325,2.03306719241479,1.77858959222228,0.449949858640699,0,1.4209602298922,0.898800331555214,0,1.76272340924412,1.89008313664367,2.3135745748652,13.4255962669788,12.8103753751936,1.22490799214954,1.15014565221884,3.67687514644008,15.4162233399144,12.3856717942632,15.2070467923681,2.50583946687368,3.65950574409639,2.08365348222704,11.1673199600552,10.1297269805702,9.93188610549266,24.7488011797881,19.5049202694771,9.13357284543973,1.28734528666413,2.87171928405785,5.50742528533188,0.860423876981386,1.3599426674155,0,3.89865850468601,3.13618820968135,3.37066608316204,1.87473354835864,1.03914401841148,1.06001872353102,16.9012103732017,2.56652954828636,0,0,3.68034769719064,5.82727690592727,3.0331466700887,3.19714863213368,1.03575153458869,3.41416919849097,1.21439728736295,2.13125834818499,1.38369298353635,2.71300752994721,1.88141931417128,1.88499886994513,3.95511948374998,4.916378135277,0,0.161766849947409,0.441683036920787,0.484875253135222,1.86391761218122,8.78342391034641,7.95897485891129,1.27728527604296,0,0,0,12.5824137100051,16.9275223042892,10.0523481690292,20.5112697826886,20.4572365864264,11.0127663616567,16.2241263067758,0.203678727700633,0.995255764880744,3.53811861807145,5.47148825304832,0.520481771850815,0,1.0803727788321,1.05493372485001,1.63287597963187,2.17793324484245,2.15513966487376,8.79591460512653,0,0.378212160335639,0.527853372491847,0.219195732427575,0,1.0447564995665,0.823128545631774,1.19420560091096,0,0,0,0.207125772535502,0.234526059981096,0.540186184383045,0,0.393528463494808,0.308534225774757,0,0,0.583826711835847,0.16455984991348,1.14917224855367,0.648550476366846,0.584799949701329,0.878200461164203,0.671032093801859,19.1363853193356,12.0398396483763,2.64335026387038,0.793351699990633,1.06644125267617,0,0.902072229254653,2.21851877085677,0.889512175379481,2.47293313946327,0.474529061544512,2.14108641141214,3.01602250560323,1.59165177632921,2.14460495831032,2.69645822596266,1.29682829924817,1.59313018603494,0.189667900953082,1.25673363870702,0,1.01825663922657,0.969762435838129,1.82353131714828,2.52946148497029,5.75679577120448,4.55296310739987,3.57851775373222,0.889357881261447,0,0.196558995113203,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,1.72617682470486,0.324270453550071,0.274561413188081,1.43768206527355,0.372140947668503,0.624075346229121,0.252578877947112,1.79397413521912,0,9.79191907883005,0,0.651859905768103,1.18821560042632,0.938760993154008,3.68513766371995,3.09456733151818,4.29294025287157,3.31033802623001,2.6575762757853,2.71073106717728,6.55453258862952,6.38934432903814,5.06271705035291,1.50791283939272,0,1.47529281905711,2.48343071674259,11.559642479121,11.3695335994437,0.327869890753351,0.757412781613119,3.15508219416257,7.41833614163613,3.87762115919038,2.86762557543062,3.11918143715352,1.13230612315533,1.21443210502468,4.09158201075837,4.34816555741176,7.71171159412337,3.69044221541498,0.712262414669021,1.30309567482861,5.93892442701128,5.30980553359851,2.42780636154981,0.604647113929502,2.45186603682668,1.18120757152309,2.15204603560749,3.10113951801865,3.99887102425256,3.56497378384721,3.79244109522979,2.10837217149998,2.06271086496374,23.8307724027652,1.62054984628179,1.4229455216103,5.35842587578981,10.6404140185364,8.20496560969525,12.176627524557,2.13125464380219,6.10146440965647,6.77862626764225,3.74898276693435,5.60613260001032,2.74489525383039,4.04096597018644,5.01363844813173,5.41664969158702,0.874442509889552,15.7611506708933,0.170870880797853,0.206386867963223,0.370389054739423,0,0,0.228778173206523,0,0,0,4.77335309007557,0.474503990371703,1.21991680276109,2.26811215725783,1.67270636811575,3.71216358368502,2.83215127408124,2.14898984885873,5.23511883968059,1.94422459937689,1.86401793926078,49.6049786042087,0.149516546043979,0.330916980914195,2.13896307178452,1.42075805825504,2.36538575687089,0.821500670520278,2.47388331203505,5.55754525456268,45.9009829569411,42.0523809136484,0.632022241256357,0.405450430580328,1.1298205288131,1.68897069871134,1.25318686967237,0.993406773906324,0.600977247599844,0.738447635872886,0.504832249740738,0.990688486514998,0.705783295957884,0.877120926657772,1.25075394132428,0.818138315270983,2.49403421976732,2.88581739386284,5.83140067961592,6.2117308054709,6.76163579112667,6.00583921443782,2.56412273974171,1.71494703263253,9.5298699766719,35.0146142422581,37.7466693935885,34.9466263198032,32.6521046453006,20.5524755931193,16.6186657425734,22.9507650078814,18.463169332193,24.0165476761628,18.6393712230655,0.31136204275253,0,0.853668028770671,2.18796045361465,1.04806581313991,3.49302666055027,4.66718128383392,3.09052585858341,5.45562656306086,2.27427490587418,4.81610669791456,4.33840585187975,3.7456602987953,2.56100609619477,2.69946704091382,4.28664322154766,3.36064545240081,3.27945674788299,1.23625770240992,3.67997300335993,2.05721551431249,2.66213709239006,3.81497903915713,3.34296758254356,3.76437521661322,3.38458431566706,5.85369513192872,3.94604567156764,2.71608227691724,3.92799590160417,2.84724043498018,3.74317033027141,3.27384834535751,3.25367366490529,2.3148793317737,5.74564329257276,4.21076895201735,2.79332370262788,1.53030665655075,1.54413993383661,3.94175320554716 | ||
|short_description=p1@Cdkl2 | |short_description=p1@Cdkl2 | ||
}} | }} |
Latest revision as of 08:56, 26 September 2015
Short description: | p1@Cdkl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cdkl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:733 |
Association with transcript: | 0bp_to_ENSMUST00000113140, ENSMUST00000113143, uc008ycd.1_5end |
EntrezGene: | Cdkl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.16e-07 | 33 |
neuronal stem cell | 3.16e-07 | 33 |
neuroblast | 3.16e-07 | 33 |
electrically signaling cell | 3.16e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.60e-19 | 95 |
ectoderm | 8.60e-19 | 95 |
presumptive ectoderm | 8.60e-19 | 95 |
central nervous system | 4.40e-18 | 73 |
nervous system | 6.85e-18 | 75 |
ecto-epithelium | 3.30e-17 | 73 |
regional part of nervous system | 6.79e-17 | 54 |
neural tube | 9.20e-16 | 52 |
neural rod | 9.20e-16 | 52 |
future spinal cord | 9.20e-16 | 52 |
neural keel | 9.20e-16 | 52 |
neurectoderm | 9.38e-15 | 64 |
neural plate | 9.38e-15 | 64 |
presumptive neural plate | 9.38e-15 | 64 |
brain | 8.19e-13 | 47 |
future brain | 8.19e-13 | 47 |
regional part of brain | 2.26e-12 | 46 |
anterior neural tube | 1.68e-11 | 40 |
gray matter | 5.52e-11 | 34 |
regional part of forebrain | 5.53e-11 | 39 |
forebrain | 5.53e-11 | 39 |
future forebrain | 5.53e-11 | 39 |
pre-chordal neural plate | 8.19e-10 | 49 |
brain grey matter | 2.63e-08 | 29 |
regional part of telencephalon | 2.63e-08 | 29 |
telencephalon | 2.63e-08 | 29 |
occipital lobe | 4.35e-08 | 10 |
visual cortex | 4.35e-08 | 10 |
neocortex | 4.35e-08 | 10 |
adult organism | 8.59e-08 | 51 |
structure with developmental contribution from neural crest | 4.69e-07 | 92 |