FFCP PHASE1:Mm9::chr4:130125596..130125616,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67149 | |EntrezGene=67149 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=20 | |||
|TSSclassifier=NA | |||
|UniProt=Q9D035 | |UniProt=Q9D035 | ||
|association_with_transcript=-88bp_to_ENSMUST00000105993,NM_025998,uc008uzg.2,uc008uzj.2_5end | |association_with_transcript=-88bp_to_ENSMUST00000105993,NM_025998,uc008uzg.2,uc008uzj.2_5end | ||
|cluster_id=chr4:130125596..130125616,+ | |||
|description=CAGE_peak_2_at_Nkain1_5end | |description=CAGE_peak_2_at_Nkain1_5end | ||
|id=chr4:130125596..130125616,+ | |id=chr4:130125596..130125616,+ | ||
|ontology_enrichment_celltype=CL:0002319!1.36e-15!43;CL:0000221!1.86e-15!44;CL:0000133!1.86e-15!44;CL:0000055!1.35e-14!50;CL:0000540!1.99e-14!33;CL:0000047!1.99e-14!33;CL:0000031!1.99e-14!33;CL:0000404!1.99e-14!33;CL:0000393!3.46e-14!39;CL:0000211!3.46e-14!39;CL:0000117!6.17e-14!23;CL:0000337!6.17e-14!23;CL:0002321!7.88e-08!70;CL:0000220!7.88e-08!70 | |ontology_enrichment_celltype=CL:0002319!1.36e-15!43;CL:0000221!1.86e-15!44;CL:0000133!1.86e-15!44;CL:0000055!1.35e-14!50;CL:0000540!1.99e-14!33;CL:0000047!1.99e-14!33;CL:0000031!1.99e-14!33;CL:0000404!1.99e-14!33;CL:0000393!3.46e-14!39;CL:0000211!3.46e-14!39;CL:0000117!6.17e-14!23;CL:0000337!6.17e-14!23;CL:0002321!7.88e-08!70;CL:0000220!7.88e-08!70 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.36e-16,43;CL:0000221,1.90e-16,44;CL:0000133,1.90e-16,44;CL:0000540,2.02e-15,33;CL:0000047,2.02e-15,33;CL:0000031,2.02e-15,33;CL:0000404,2.02e-15,33;CL:0000393,5.97e-15,39;CL:0000211,5.97e-15,39;CL:0000117,6.84e-15,23;CL:0000337,6.84e-15,23;CL:0002321,1.16e-08,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.74e-30!75;UBERON:0001016!6.74e-30!75;UBERON:0001017!1.74e-28!73;UBERON:0005743!1.74e-28!73;UBERON:0004121!2.51e-25!102;UBERON:0000924!2.51e-25!102;UBERON:0006601!2.51e-25!102;UBERON:0000033!2.50e-23!63;UBERON:0002346!5.06e-23!71;UBERON:0003075!5.06e-23!71;UBERON:0007284!5.06e-23!71;UBERON:0001049!5.94e-22!52;UBERON:0005068!5.94e-22!52;UBERON:0006241!5.94e-22!52;UBERON:0007135!5.94e-22!52;UBERON:0000955!5.13e-21!50;UBERON:0006238!5.13e-21!50;UBERON:0002616!1.59e-20!49;UBERON:0003056!9.98e-20!49;UBERON:0002020!2.53e-16!34;UBERON:0003080!3.44e-16!40;UBERON:0002780!1.65e-15!39;UBERON:0001890!1.65e-15!39;UBERON:0006240!1.65e-15!39;UBERON:0002791!8.05e-14!29;UBERON:0003528!8.05e-14!29;UBERON:0001893!8.05e-14!29;UBERON:0000956!3.31e-09!21;UBERON:0001869!3.31e-09!21;UBERON:0000203!3.31e-09!21;UBERON:0007811!4.36e-09!86;UBERON:0000153!7.61e-09!94;UBERON:0000468!2.83e-07!333;UBERON:0002619!2.92e-07!17 | |ontology_enrichment_uberon=UBERON:0000073!6.74e-30!75;UBERON:0001016!6.74e-30!75;UBERON:0001017!1.74e-28!73;UBERON:0005743!1.74e-28!73;UBERON:0004121!2.51e-25!102;UBERON:0000924!2.51e-25!102;UBERON:0006601!2.51e-25!102;UBERON:0000033!2.50e-23!63;UBERON:0002346!5.06e-23!71;UBERON:0003075!5.06e-23!71;UBERON:0007284!5.06e-23!71;UBERON:0001049!5.94e-22!52;UBERON:0005068!5.94e-22!52;UBERON:0006241!5.94e-22!52;UBERON:0007135!5.94e-22!52;UBERON:0000955!5.13e-21!50;UBERON:0006238!5.13e-21!50;UBERON:0002616!1.59e-20!49;UBERON:0003056!9.98e-20!49;UBERON:0002020!2.53e-16!34;UBERON:0003080!3.44e-16!40;UBERON:0002780!1.65e-15!39;UBERON:0001890!1.65e-15!39;UBERON:0006240!1.65e-15!39;UBERON:0002791!8.05e-14!29;UBERON:0003528!8.05e-14!29;UBERON:0001893!8.05e-14!29;UBERON:0000956!3.31e-09!21;UBERON:0001869!3.31e-09!21;UBERON:0000203!3.31e-09!21;UBERON:0007811!4.36e-09!86;UBERON:0000153!7.61e-09!94;UBERON:0000468!2.83e-07!333;UBERON:0002619!2.92e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.32e-32,75;UBERON:0001017,1.76e-30,73;UBERON:0004121,2.03e-29,95;UBERON:0000924,2.03e-29,95;UBERON:0006601,2.03e-29,95;UBERON:0002346,1.11e-27,64;UBERON:0003075,1.11e-27,64;UBERON:0007284,1.11e-27,64;UBERON:0000073,6.46e-25,54;UBERON:0001049,1.57e-23,52;UBERON:0005068,1.57e-23,52;UBERON:0006241,1.57e-23,52;UBERON:0007135,1.57e-23,52;UBERON:0010371,3.96e-22,73;UBERON:0003056,3.93e-21,49;UBERON:0000955,2.23e-20,47;UBERON:0006238,2.23e-20,47;UBERON:0002616,7.36e-20,46;UBERON:0002020,1.83e-17,34;UBERON:0003080,2.55e-17,40;UBERON:0010314,1.02e-16,92;UBERON:0002780,1.38e-16,39;UBERON:0001890,1.38e-16,39;UBERON:0006240,1.38e-16,39;UBERON:0003528,9.11e-15,29;UBERON:0002791,9.11e-15,29;UBERON:0001893,9.11e-15,29;UBERON:0000956,8.49e-10,21;UBERON:0001869,8.49e-10,21;UBERON:0000203,8.49e-10,21;UBERON:0002619,1.05e-07,17;UBERON:0003076,7.52e-07,12;UBERON:0003057,7.52e-07,12 | |||
|phase1_expression=2.24208385946712,1.74487703819681,1.36499771816861,0.60492842261366,0,1.00727563147134,1.16806320297763,0,0.140788722151667,0,0.171217968225505,0.159544317990673,0,0,0,0,0,0,0,0,4.16712121740242,0.0992909512008853,0.261199789138935,1.91990907352088,1.83527424853736,0.57423196411502,0.86152399231815,0.861884930743556,1.71021077510736,1.51218077855958,3.32595765982957,0,0,0,0.577703239502549,0.498703936075477,0.408338712524738,0,0,0,0,0,0,3.65100772129174,4.66333883609767,17.4369414553597,2.34717403304412,1.52617609466313,3.73466510648602,2.52758868796568,0.279972843250725,2.87505128729943,0,0,0,1.28629718017973,2.0057340795713,0.515672092277442,38.0354946416044,26.9785399428737,39.2975470173831,5.42151251310611,0.889294796111139,7.64914759689189,6.92206453796882,3.5524005747305,9.58720353658895,21.1320067926855,14.4128561108784,14.9856591548177,17.4569717921647,16.8534080798244,17.6694832761291,15.4338407010842,12.6516021744072,13.7882817991503,33.0347642998166,30.6449611404451,26.1131106535614,21.6293511877518,18.9379422256988,23.4411016750542,46.0651948352279,20.2594539611405,35.1435969886663,10.9012576625257,9.5389026135399,20.8767379324337,23.7022985132866,24.2584707942782,0.289864488701678,0,0,0,0,0,2.80888840263504,0,0,0.35333957451034,1.97180787687353,2.56652954828636,0,0,2.38140145112336,3.04031838570118,1.51657333504435,1.48439043634778,0,1.1875371125186,2.4287945747259,0.913396434936424,1.15307748628029,1.20578112442098,0.470354828542819,0.753999547978053,0.247194967734374,1.73519228303894,6.19227386364912,2.42650274921114,4.63767188766826,1.45462575940567,5.59175283654366,31.6203260772471,34.7681533310335,0.766371165625774,0.11981512450592,0,0,42.3907509515648,32.0250421973039,13.0680526197379,17.0347833788431,14.0643501531682,49.6613426497349,37.3154905055843,0.611036183101898,1.11966273549084,0,1.47309299120532,12.4915625244196,26.6686441142829,22.147641966058,10.3986324306643,14.6278473175355,11.0177799444971,14.8985742049969,3.3631438196072,5.6047678162539,5.10586416453112,2.99116911078713,2.41115305670332,1.39023624612799,1.39300866608867,0.205782136407943,1.39323986772945,0,0.257347907114715,0,1.03562886267751,1.17263029990548,0,1.65721314909647,0.787056926989615,0.617068451549513,0.232533944750408,0.804820204198858,0.934122738937356,1.48103864922132,0.492502392237286,1.21603214318784,1.60819986167866,1.3173006917463,1.61047702512446,19.3466752678997,21.9186824367876,0.330418782983798,0.528901133327089,2.34617075588757,1.39342003116263,1.9330119198314,0.605050573870028,0.444756087689741,0.951128130562796,0.474529061544512,0.988193728344065,0.754005626400808,0.198956472041151,0.19496408711912,0.898819408654221,0.864552199498777,0.199141273254367,3.60369011810855,3.31320686568214,4.50830942692322,2.24016460629846,1.93952487167626,1.54298803758701,4.67950374719504,4.28069429140846,2.82597710114475,3.45512058981041,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0,0,0,1.11642284300551,0.312037673114561,0,0.358794827043824,0,3.32555742299888,3.03186258832776,2.77040459951444,1.01847051465113,0.234690248288502,0.502518772325447,0.952174563544055,0.195133647857799,2.83743259391144,2.87904096543407,7.97273843287435,4.58817281204066,1.55416483679306,1.3018415272336,1.50791283939272,2.71952841909355,0,0.551873492609465,60.5275724253976,61.4189237743145,0.983609672260053,6.5642441073137,2.83957397474631,2.73307121007647,2.80050417052639,4.30143836314594,3.56477878531831,5.66153061577665,4.04810701674894,2.92255857911312,3.95287777946523,11.8888887076069,1.13552068166615,1.24645922567079,1.62886959353576,1.15479086080775,0,0.728341908464944,0.906970670894253,0.565815239267694,0.295301892880773,0.307435147943927,0.775284879504663,0.363533729477506,0,0,0,0,4.42571487479924,6.30213829109586,5.56242340265844,2.35770738534752,1.24138163549592,1.96205699362278,3.29098041204242,3.34911444026059,6.57080782578389,4.87213762986786,3.52845436887939,1.97863503529776,0,0.422190474497091,0.238744688006273,0.328281799490123,0.874442509889552,67.4948099318255,0,1.23832120777933,0.370389054739423,0,0,0,0.339956859987711,0.139951452323658,0.276399947608848,0.954670618015114,4.9032079005076,2.03319467126849,1.18805874903981,0.418176592028937,0.655087691238533,0.404593039154462,0.661227645802687,0.26175594198403,1.16653475962614,0,0,0.747582730219894,0.330916980914195,0.972255941720238,0.904118764344118,0.844780627453891,0.704143431874524,0.781226309063701,2.83120229949419,0.966336483304024,0.864090018773596,0,1.21635129174099,0.308132871494482,0.129920822977795,0.179026695667481,0,0.120195449519969,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0,0.192423683280659,0.116876902181569,2.49403421976732,1.33191572024439,0.179427713218951,2.18250001273302,0,3.19060208267009,2.38097111547445,0.643105137237198,1.50471631210609,7.90652579663893,6.44455331110048,9.73922372846974,7.04598047609119,5.48066015816514,7.55393897389701,8.77529250301348,5.40385443869065,9.9691329976525,5.69536342927002,14.2188666190322,14.7639203158381,10.0732827394939,7.29320151204882,5.24032906569956,1.83843508450014,2.22246727801615,3.09052585858341,4.49286893428541,3.53776096469316,3.04175159868288,3.39527414494937,2.34103768674706,2.88113185821912,2.81433797882505,4.76293691283074,2.89710814862139,1.54327376370964,3.70877310722976,3.53277408322554,4.11443102862498,1.95223386775271,3.09967046931517,3.19762116591123,3.95259397744389,2.19997980518359,1.46342378298218,0.526139422875686,2.98769050460896,5.05028044491965,3.6776855618494,3.15214343601803,0.818462086339379,2.47898945897546,1.92906610981141,10.2422336954558,3.74290573512653,3.22306581072447,2.67803664896381,2.42650561031467,2.55054619182464 | |phase1_expression=2.24208385946712,1.74487703819681,1.36499771816861,0.60492842261366,0,1.00727563147134,1.16806320297763,0,0.140788722151667,0,0.171217968225505,0.159544317990673,0,0,0,0,0,0,0,0,4.16712121740242,0.0992909512008853,0.261199789138935,1.91990907352088,1.83527424853736,0.57423196411502,0.86152399231815,0.861884930743556,1.71021077510736,1.51218077855958,3.32595765982957,0,0,0,0.577703239502549,0.498703936075477,0.408338712524738,0,0,0,0,0,0,3.65100772129174,4.66333883609767,17.4369414553597,2.34717403304412,1.52617609466313,3.73466510648602,2.52758868796568,0.279972843250725,2.87505128729943,0,0,0,1.28629718017973,2.0057340795713,0.515672092277442,38.0354946416044,26.9785399428737,39.2975470173831,5.42151251310611,0.889294796111139,7.64914759689189,6.92206453796882,3.5524005747305,9.58720353658895,21.1320067926855,14.4128561108784,14.9856591548177,17.4569717921647,16.8534080798244,17.6694832761291,15.4338407010842,12.6516021744072,13.7882817991503,33.0347642998166,30.6449611404451,26.1131106535614,21.6293511877518,18.9379422256988,23.4411016750542,46.0651948352279,20.2594539611405,35.1435969886663,10.9012576625257,9.5389026135399,20.8767379324337,23.7022985132866,24.2584707942782,0.289864488701678,0,0,0,0,0,2.80888840263504,0,0,0.35333957451034,1.97180787687353,2.56652954828636,0,0,2.38140145112336,3.04031838570118,1.51657333504435,1.48439043634778,0,1.1875371125186,2.4287945747259,0.913396434936424,1.15307748628029,1.20578112442098,0.470354828542819,0.753999547978053,0.247194967734374,1.73519228303894,6.19227386364912,2.42650274921114,4.63767188766826,1.45462575940567,5.59175283654366,31.6203260772471,34.7681533310335,0.766371165625774,0.11981512450592,0,0,42.3907509515648,32.0250421973039,13.0680526197379,17.0347833788431,14.0643501531682,49.6613426497349,37.3154905055843,0.611036183101898,1.11966273549084,0,1.47309299120532,12.4915625244196,26.6686441142829,22.147641966058,10.3986324306643,14.6278473175355,11.0177799444971,14.8985742049969,3.3631438196072,5.6047678162539,5.10586416453112,2.99116911078713,2.41115305670332,1.39023624612799,1.39300866608867,0.205782136407943,1.39323986772945,0,0.257347907114715,0,1.03562886267751,1.17263029990548,0,1.65721314909647,0.787056926989615,0.617068451549513,0.232533944750408,0.804820204198858,0.934122738937356,1.48103864922132,0.492502392237286,1.21603214318784,1.60819986167866,1.3173006917463,1.61047702512446,19.3466752678997,21.9186824367876,0.330418782983798,0.528901133327089,2.34617075588757,1.39342003116263,1.9330119198314,0.605050573870028,0.444756087689741,0.951128130562796,0.474529061544512,0.988193728344065,0.754005626400808,0.198956472041151,0.19496408711912,0.898819408654221,0.864552199498777,0.199141273254367,3.60369011810855,3.31320686568214,4.50830942692322,2.24016460629846,1.93952487167626,1.54298803758701,4.67950374719504,4.28069429140846,2.82597710114475,3.45512058981041,0,0.166845105716094,0,0,0,0,0.25462585178142,0,0,0,0,1.11642284300551,0.312037673114561,0,0.358794827043824,0,3.32555742299888,3.03186258832776,2.77040459951444,1.01847051465113,0.234690248288502,0.502518772325447,0.952174563544055,0.195133647857799,2.83743259391144,2.87904096543407,7.97273843287435,4.58817281204066,1.55416483679306,1.3018415272336,1.50791283939272,2.71952841909355,0,0.551873492609465,60.5275724253976,61.4189237743145,0.983609672260053,6.5642441073137,2.83957397474631,2.73307121007647,2.80050417052639,4.30143836314594,3.56477878531831,5.66153061577665,4.04810701674894,2.92255857911312,3.95287777946523,11.8888887076069,1.13552068166615,1.24645922567079,1.62886959353576,1.15479086080775,0,0.728341908464944,0.906970670894253,0.565815239267694,0.295301892880773,0.307435147943927,0.775284879504663,0.363533729477506,0,0,0,0,4.42571487479924,6.30213829109586,5.56242340265844,2.35770738534752,1.24138163549592,1.96205699362278,3.29098041204242,3.34911444026059,6.57080782578389,4.87213762986786,3.52845436887939,1.97863503529776,0,0.422190474497091,0.238744688006273,0.328281799490123,0.874442509889552,67.4948099318255,0,1.23832120777933,0.370389054739423,0,0,0,0.339956859987711,0.139951452323658,0.276399947608848,0.954670618015114,4.9032079005076,2.03319467126849,1.18805874903981,0.418176592028937,0.655087691238533,0.404593039154462,0.661227645802687,0.26175594198403,1.16653475962614,0,0,0.747582730219894,0.330916980914195,0.972255941720238,0.904118764344118,0.844780627453891,0.704143431874524,0.781226309063701,2.83120229949419,0.966336483304024,0.864090018773596,0,1.21635129174099,0.308132871494482,0.129920822977795,0.179026695667481,0,0.120195449519969,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0,0.192423683280659,0.116876902181569,2.49403421976732,1.33191572024439,0.179427713218951,2.18250001273302,0,3.19060208267009,2.38097111547445,0.643105137237198,1.50471631210609,7.90652579663893,6.44455331110048,9.73922372846974,7.04598047609119,5.48066015816514,7.55393897389701,8.77529250301348,5.40385443869065,9.9691329976525,5.69536342927002,14.2188666190322,14.7639203158381,10.0732827394939,7.29320151204882,5.24032906569956,1.83843508450014,2.22246727801615,3.09052585858341,4.49286893428541,3.53776096469316,3.04175159868288,3.39527414494937,2.34103768674706,2.88113185821912,2.81433797882505,4.76293691283074,2.89710814862139,1.54327376370964,3.70877310722976,3.53277408322554,4.11443102862498,1.95223386775271,3.09967046931517,3.19762116591123,3.95259397744389,2.19997980518359,1.46342378298218,0.526139422875686,2.98769050460896,5.05028044491965,3.6776855618494,3.15214343601803,0.818462086339379,2.47898945897546,1.92906610981141,10.2422336954558,3.74290573512653,3.22306581072447,2.67803664896381,2.42650561031467,2.55054619182464 | ||
|short_description=p2@Nkain1 | |short_description=p2@Nkain1 | ||
}} | }} |
Latest revision as of 10:01, 26 September 2015
Short description: | p2@Nkain1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nkain1_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | -88bp_to_ENSMUST00000105993, NM_025998, uc008uzg.2, uc008uzj.2_5end |
EntrezGene: | Nkain1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.36e-16 | 43 |
ectodermal cell | 1.90e-16 | 44 |
neurectodermal cell | 1.90e-16 | 44 |
neuron | 2.02e-15 | 33 |
neuronal stem cell | 2.02e-15 | 33 |
neuroblast | 2.02e-15 | 33 |
electrically signaling cell | 2.02e-15 | 33 |
electrically responsive cell | 5.97e-15 | 39 |
electrically active cell | 5.97e-15 | 39 |
CNS neuron (sensu Vertebrata) | 6.84e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.84e-15 | 23 |
embryonic cell | 1.16e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.32e-32 | 75 |
central nervous system | 1.76e-30 | 73 |
ectoderm-derived structure | 2.03e-29 | 95 |
ectoderm | 2.03e-29 | 95 |
presumptive ectoderm | 2.03e-29 | 95 |
neurectoderm | 1.11e-27 | 64 |
neural plate | 1.11e-27 | 64 |
presumptive neural plate | 1.11e-27 | 64 |
regional part of nervous system | 6.46e-25 | 54 |
neural tube | 1.57e-23 | 52 |
neural rod | 1.57e-23 | 52 |
future spinal cord | 1.57e-23 | 52 |
neural keel | 1.57e-23 | 52 |
ecto-epithelium | 3.96e-22 | 73 |
pre-chordal neural plate | 3.93e-21 | 49 |
brain | 2.23e-20 | 47 |
future brain | 2.23e-20 | 47 |
regional part of brain | 7.36e-20 | 46 |
gray matter | 1.83e-17 | 34 |
anterior neural tube | 2.55e-17 | 40 |
structure with developmental contribution from neural crest | 1.02e-16 | 92 |
regional part of forebrain | 1.38e-16 | 39 |
forebrain | 1.38e-16 | 39 |
future forebrain | 1.38e-16 | 39 |
brain grey matter | 9.11e-15 | 29 |
regional part of telencephalon | 9.11e-15 | 29 |
telencephalon | 9.11e-15 | 29 |
cerebral cortex | 8.49e-10 | 21 |
cerebral hemisphere | 8.49e-10 | 21 |
pallium | 8.49e-10 | 21 |
regional part of cerebral cortex | 1.05e-07 | 17 |
posterior neural tube | 7.52e-07 | 12 |
chordal neural plate | 7.52e-07 | 12 |