FFCP PHASE1:Mm9::chr1:137271532..137271675,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=77552 | |EntrezGene=77552 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=176 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CA71,Q8CEK6 | |UniProt=Q8CA71,Q8CEK6 | ||
|association_with_transcript=0bp_to_ENSMUST00000159181,NM_175259,uc007ctc.1,uc007ctd.1_5end | |association_with_transcript=0bp_to_ENSMUST00000159181,NM_175259,uc007ctc.1,uc007ctd.1_5end | ||
|cluster_id=chr1:137271532..137271675,- | |||
|description=CAGE_peak_1_at_Shisa4_5end | |description=CAGE_peak_1_at_Shisa4_5end | ||
|id=chr1:137271532..137271675,- | |id=chr1:137271532..137271675,- | ||
|ontology_enrichment_celltype=CL:0000055!1.64e-18!50;CL:0000221!5.15e-17!44;CL:0000133!5.15e-17!44;CL:0002319!1.02e-16!43;CL:0000393!8.73e-14!39;CL:0000211!8.73e-14!39;CL:0000540!2.96e-11!33;CL:0000047!2.96e-11!33;CL:0000031!2.96e-11!33;CL:0000404!2.96e-11!33;CL:0002321!2.37e-10!70;CL:0000220!2.37e-10!70;CL:0000117!4.88e-08!23;CL:0000337!4.88e-08!23;CL:0000333!9.72e-07!10;CL:0000095!9.72e-07!10;CL:0000243!9.72e-07!10;CL:0000123!9.72e-07!10;CL:0000125!9.72e-07!10;CL:0000030!9.72e-07!10;CL:0000339!9.72e-07!10 | |ontology_enrichment_celltype=CL:0000055!1.64e-18!50;CL:0000221!5.15e-17!44;CL:0000133!5.15e-17!44;CL:0002319!1.02e-16!43;CL:0000393!8.73e-14!39;CL:0000211!8.73e-14!39;CL:0000540!2.96e-11!33;CL:0000047!2.96e-11!33;CL:0000031!2.96e-11!33;CL:0000404!2.96e-11!33;CL:0002321!2.37e-10!70;CL:0000220!2.37e-10!70;CL:0000117!4.88e-08!23;CL:0000337!4.88e-08!23;CL:0000333!9.72e-07!10;CL:0000095!9.72e-07!10;CL:0000243!9.72e-07!10;CL:0000123!9.72e-07!10;CL:0000125!9.72e-07!10;CL:0000030!9.72e-07!10;CL:0000339!9.72e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.91e-17,44;CL:0000133,4.91e-17,44;CL:0002319,9.75e-17,43;CL:0000393,8.41e-14,39;CL:0000211,8.41e-14,39;CL:0000540,2.87e-11,33;CL:0000047,2.87e-11,33;CL:0000031,2.87e-11,33;CL:0000404,2.87e-11,33;CL:0002321,3.69e-10,70;CL:0000117,4.78e-08,23;CL:0000337,4.78e-08,23;CL:0000333,9.57e-07,10;CL:0000095,9.57e-07,10;CL:0000243,9.57e-07,10;CL:0000123,9.57e-07,10;CL:0000125,9.57e-07,10;CL:0000030,9.57e-07,10;CL:0000339,9.57e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.09e-28!75;UBERON:0001016!1.09e-28!75;UBERON:0001017!2.98e-28!73;UBERON:0005743!2.98e-28!73;UBERON:0004121!4.43e-25!102;UBERON:0000924!4.43e-25!102;UBERON:0006601!4.43e-25!102;UBERON:0000033!8.27e-19!63;UBERON:0001049!4.51e-18!52;UBERON:0005068!4.51e-18!52;UBERON:0006241!4.51e-18!52;UBERON:0007135!4.51e-18!52;UBERON:0002346!5.01e-18!71;UBERON:0003075!5.01e-18!71;UBERON:0007284!5.01e-18!71;UBERON:0000955!4.02e-17!50;UBERON:0006238!4.02e-17!50;UBERON:0002616!9.68e-17!49;UBERON:0002020!1.69e-13!34;UBERON:0003056!2.05e-12!49;UBERON:0003080!6.16e-12!40;UBERON:0002780!1.71e-11!39;UBERON:0001890!1.71e-11!39;UBERON:0006240!1.71e-11!39;UBERON:0002791!3.53e-11!29;UBERON:0003528!3.53e-11!29;UBERON:0001893!3.53e-11!29;UBERON:0007811!6.48e-09!86;UBERON:0000956!1.60e-08!21;UBERON:0001869!1.60e-08!21;UBERON:0000203!1.60e-08!21;UBERON:0000153!3.82e-08!94;UBERON:0002619!5.63e-08!17;UBERON:0003076!2.97e-07!12;UBERON:0003057!2.97e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.00e-28,75;UBERON:0001017,2.75e-28,73;UBERON:0004121,2.26e-26,95;UBERON:0000924,2.26e-26,95;UBERON:0006601,2.26e-26,95;UBERON:0002346,1.41e-19,64;UBERON:0003075,1.41e-19,64;UBERON:0007284,1.41e-19,64;UBERON:0000073,2.99e-19,54;UBERON:0001049,4.29e-18,52;UBERON:0005068,4.29e-18,52;UBERON:0006241,4.29e-18,52;UBERON:0007135,4.29e-18,52;UBERON:0010371,8.50e-17,73;UBERON:0010314,8.64e-16,92;UBERON:0000955,2.11e-15,47;UBERON:0006238,2.11e-15,47;UBERON:0002616,4.99e-15,46;UBERON:0002020,1.63e-13,34;UBERON:0003056,1.98e-12,49;UBERON:0003080,5.97e-12,40;UBERON:0002780,1.66e-11,39;UBERON:0001890,1.66e-11,39;UBERON:0006240,1.66e-11,39;UBERON:0003528,3.43e-11,29;UBERON:0002791,3.43e-11,29;UBERON:0001893,3.43e-11,29;UBERON:0000956,1.57e-08,21;UBERON:0001869,1.57e-08,21;UBERON:0000203,1.57e-08,21;UBERON:0002619,5.52e-08,17;UBERON:0003076,2.92e-07,12;UBERON:0003057,2.92e-07,12 | |||
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| ||
|short_description=p1@Shisa4 | |short_description=p1@Shisa4 | ||
}} | }} |
Latest revision as of 10:42, 26 September 2015
Short description: | p1@Shisa4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Shisa4_5end |
Coexpression cluster: | MCL_coexpression_mm9:176 |
Association with transcript: | 0bp_to_ENSMUST00000159181, NM_175259, uc007ctc.1, uc007ctd.1_5end |
EntrezGene: | Shisa4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.91e-17 | 44 |
neurectodermal cell | 4.91e-17 | 44 |
neural cell | 9.75e-17 | 43 |
electrically responsive cell | 8.41e-14 | 39 |
electrically active cell | 8.41e-14 | 39 |
neuron | 2.87e-11 | 33 |
neuronal stem cell | 2.87e-11 | 33 |
neuroblast | 2.87e-11 | 33 |
electrically signaling cell | 2.87e-11 | 33 |
embryonic cell | 3.69e-10 | 70 |
CNS neuron (sensu Vertebrata) | 4.78e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.78e-08 | 23 |
migratory neural crest cell | 9.57e-07 | 10 |
neuron associated cell | 9.57e-07 | 10 |
glial cell (sensu Vertebrata) | 9.57e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.57e-07 | 10 |
glial cell | 9.57e-07 | 10 |
glioblast | 9.57e-07 | 10 |
glioblast (sensu Vertebrata) | 9.57e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.00e-28 | 75 |
central nervous system | 2.75e-28 | 73 |
ectoderm-derived structure | 2.26e-26 | 95 |
ectoderm | 2.26e-26 | 95 |
presumptive ectoderm | 2.26e-26 | 95 |
neurectoderm | 1.41e-19 | 64 |
neural plate | 1.41e-19 | 64 |
presumptive neural plate | 1.41e-19 | 64 |
regional part of nervous system | 2.99e-19 | 54 |
neural tube | 4.29e-18 | 52 |
neural rod | 4.29e-18 | 52 |
future spinal cord | 4.29e-18 | 52 |
neural keel | 4.29e-18 | 52 |
ecto-epithelium | 8.50e-17 | 73 |
structure with developmental contribution from neural crest | 8.64e-16 | 92 |
brain | 2.11e-15 | 47 |
future brain | 2.11e-15 | 47 |
regional part of brain | 4.99e-15 | 46 |
gray matter | 1.63e-13 | 34 |
pre-chordal neural plate | 1.98e-12 | 49 |
anterior neural tube | 5.97e-12 | 40 |
regional part of forebrain | 1.66e-11 | 39 |
forebrain | 1.66e-11 | 39 |
future forebrain | 1.66e-11 | 39 |
brain grey matter | 3.43e-11 | 29 |
regional part of telencephalon | 3.43e-11 | 29 |
telencephalon | 3.43e-11 | 29 |
cerebral cortex | 1.57e-08 | 21 |
cerebral hemisphere | 1.57e-08 | 21 |
pallium | 1.57e-08 | 21 |
regional part of cerebral cortex | 5.52e-08 | 17 |
posterior neural tube | 2.92e-07 | 12 |
chordal neural plate | 2.92e-07 | 12 |