FFCP PHASE1:Mm9::chr9:29220220..29220263,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235106 | |EntrezGene=235106 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=367 | |MCL_coexpression_id=367 | ||
|TSSclassifier=NA | |||
|UniProt=Q99PJ0 | |UniProt=Q99PJ0 | ||
|association_with_transcript=-431bp_to_ENSMUST00000115237_5end | |association_with_transcript=-431bp_to_ENSMUST00000115237_5end | ||
|cluster_id=chr9:29220220..29220263,- | |||
|description=CAGE_peak_2_at_Ntm_5end | |description=CAGE_peak_2_at_Ntm_5end | ||
|id=chr9:29220220..29220263,- | |id=chr9:29220220..29220263,- | ||
|ontology_enrichment_celltype=CL:0000117!4.39e-11!23;CL:0000337!4.39e-11!23;CL:0000540!4.13e-09!33;CL:0000047!4.13e-09!33;CL:0000031!4.13e-09!33;CL:0000404!4.13e-09!33;CL:0000221!9.60e-08!44;CL:0000133!9.60e-08!44;CL:0002319!2.24e-07!43 | |ontology_enrichment_celltype=CL:0000117!4.39e-11!23;CL:0000337!4.39e-11!23;CL:0000540!4.13e-09!33;CL:0000047!4.13e-09!33;CL:0000031!4.13e-09!33;CL:0000404!4.13e-09!33;CL:0000221!9.60e-08!44;CL:0000133!9.60e-08!44;CL:0002319!2.24e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.68e-12,23;CL:0000337,1.68e-12,23;CL:0000540,1.15e-07,33;CL:0000047,1.15e-07,33;CL:0000031,1.15e-07,33;CL:0000404,1.15e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.14e-21!71;UBERON:0003075!1.14e-21!71;UBERON:0007284!1.14e-21!71;UBERON:0000073!1.90e-21!75;UBERON:0001016!1.90e-21!75;UBERON:0000033!5.98e-21!63;UBERON:0001017!9.69e-21!73;UBERON:0005743!9.69e-21!73;UBERON:0004121!1.65e-20!102;UBERON:0000924!1.65e-20!102;UBERON:0006601!1.65e-20!102;UBERON:0001049!7.21e-19!52;UBERON:0005068!7.21e-19!52;UBERON:0006241!7.21e-19!52;UBERON:0007135!7.21e-19!52;UBERON:0003056!3.74e-18!49;UBERON:0000955!3.79e-17!50;UBERON:0006238!3.79e-17!50;UBERON:0002616!1.98e-16!49;UBERON:0003080!9.50e-14!40;UBERON:0002020!9.80e-14!34;UBERON:0002780!3.53e-13!39;UBERON:0001890!3.53e-13!39;UBERON:0006240!3.53e-13!39;UBERON:0000153!1.55e-10!94;UBERON:0002791!2.33e-10!29;UBERON:0003528!2.33e-10!29;UBERON:0001893!2.33e-10!29;UBERON:0007811!7.21e-10!86;UBERON:0002021!1.66e-07!10;UBERON:0000411!1.66e-07!10;UBERON:0001950!1.66e-07!10;UBERON:0000468!4.74e-07!333 | |ontology_enrichment_uberon=UBERON:0002346!1.14e-21!71;UBERON:0003075!1.14e-21!71;UBERON:0007284!1.14e-21!71;UBERON:0000073!1.90e-21!75;UBERON:0001016!1.90e-21!75;UBERON:0000033!5.98e-21!63;UBERON:0001017!9.69e-21!73;UBERON:0005743!9.69e-21!73;UBERON:0004121!1.65e-20!102;UBERON:0000924!1.65e-20!102;UBERON:0006601!1.65e-20!102;UBERON:0001049!7.21e-19!52;UBERON:0005068!7.21e-19!52;UBERON:0006241!7.21e-19!52;UBERON:0007135!7.21e-19!52;UBERON:0003056!3.74e-18!49;UBERON:0000955!3.79e-17!50;UBERON:0006238!3.79e-17!50;UBERON:0002616!1.98e-16!49;UBERON:0003080!9.50e-14!40;UBERON:0002020!9.80e-14!34;UBERON:0002780!3.53e-13!39;UBERON:0001890!3.53e-13!39;UBERON:0006240!3.53e-13!39;UBERON:0000153!1.55e-10!94;UBERON:0002791!2.33e-10!29;UBERON:0003528!2.33e-10!29;UBERON:0001893!2.33e-10!29;UBERON:0007811!7.21e-10!86;UBERON:0002021!1.66e-07!10;UBERON:0000411!1.66e-07!10;UBERON:0001950!1.66e-07!10;UBERON:0000468!4.74e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.62e-26,64;UBERON:0003075,5.62e-26,64;UBERON:0007284,5.62e-26,64;UBERON:0000073,4.14e-23,54;UBERON:0010371,2.74e-22,73;UBERON:0004121,9.51e-22,95;UBERON:0000924,9.51e-22,95;UBERON:0006601,9.51e-22,95;UBERON:0001049,1.01e-21,52;UBERON:0005068,1.01e-21,52;UBERON:0006241,1.01e-21,52;UBERON:0007135,1.01e-21,52;UBERON:0003056,2.63e-21,49;UBERON:0001016,4.57e-21,75;UBERON:0010314,1.47e-20,92;UBERON:0001017,3.08e-20,73;UBERON:0000955,5.93e-18,47;UBERON:0006238,5.93e-18,47;UBERON:0002616,4.21e-17,46;UBERON:0002020,2.47e-16,34;UBERON:0003080,6.56e-16,40;UBERON:0002780,3.26e-15,39;UBERON:0001890,3.26e-15,39;UBERON:0006240,3.26e-15,39;UBERON:0003528,3.47e-12,29;UBERON:0002791,3.47e-12,29;UBERON:0001893,3.47e-12,29;UBERON:0002021,6.57e-09,10;UBERON:0000411,6.57e-09,10;UBERON:0001950,6.57e-09,10;UBERON:0000956,1.52e-07,21;UBERON:0001869,1.52e-07,21;UBERON:0000203,1.52e-07,21 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,1.43752564364972,0,0,0,0,0,0,15.1737345644698,14.8117474196169,8.87363964908651,0,0,0,0,0,0.599200221036809,0.384218305321555,1.14058573539325,1.08004750665353,1.26194976810829,15.996455126613,13.0312439161452,1.46988959057945,1.72521847832825,0.919218786610021,2.20231761998777,4.85211884723713,4.14737639791857,17.4089899803856,15.0039735507952,17.7110545989298,2.79182999001381,2.25105044012672,2.90316670775939,16.7938293719991,16.0879999302986,20.6903384866084,2.27178579999552,2.34271836331035,0,0,0,0,0,0,0.421333260395256,0,0,0,3.09855523508697,0,0,0,0,0,0,0,0,0,1.21439728736295,0.608930956624282,0.230615497256059,0.452167921657868,0.23517741427141,0.125666591329675,0,0.144599356919912,0,0.323533699894818,0,0,0,29.5708604981663,36.2342802787277,0,0,0,0,5.54225365797844,2.74500361691176,4.64921102817598,4.86708096538374,7.41574826257959,6.44142938134636,5.51620294430376,1.62942982160506,0,0,2.52530227063769,1.04096354370163,2.5289231487682,3.42118046630164,6.0281927134286,9.79725587779121,6.40568601424249,7.77724313845749,13.1938719076898,1.07783996466421,3.02569728268511,2.81521798662318,1.09597866213787,0.834141747676794,0.696504333044333,0.411564272815887,1.59227413454795,0,0,0,4.76389276831654,3.28336483973535,4.32148947506436,4.97163944728941,1.77087808572663,1.3884040159864,1.16266972375204,0.804820204198858,0.583826711835847,1.31647879930784,0.985004784474571,0.405344047729279,0.292399974850665,0,0,1.47202963994889,1.9551876352064,0,0,3.41261200856374,2.55460339046482,0.644337306610467,0.605050573870028,0.667134131534611,0.190225626112559,0,0.164698954724011,0,0,0,0,0,0,1.51734320762465,3.19895835307241,1.1270773567308,1.22190796707189,2.13347735884388,1.19230893813542,0.379419222745544,0.147610147979602,0,0,0,0.667380422864376,0.589676985339609,0.449724224769707,0,0,0,0,0,0,0,0,0.624075346229121,0,0,0,0,3.41084541186873,0.651859905768103,0.678980343100753,0.938760993154008,0,0,0.195133647857799,0.315270288212382,0,0.159454768657487,0,0,0,0,0,0,0,1.9266070798535,3.8679856575427,0,0,0.94652465824877,0.390438744296638,1.07711698866399,0.477937595905104,0.668396022247182,0.849229592366497,0,0.584511715822624,0,17.6726724031994,0.141940085208269,1.06839362200353,1.62886959353576,2.47455184458803,0,1.94224508923985,0,0.377210159511796,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,1.36175842301515,2.88097750450096,2.8458910432206,3.00071849044229,1.77340233642274,1.42695054081656,2.30368628842969,0.304464949114599,0,0,0,0,0.322928853391811,0.301564624640779,0.238744688006273,0,0.291480836629851,2.22510362412612,0,4.33412422722767,0.925972636848558,0,0,0,0,0,0,0,0.949007980743406,0.813277868507395,1.29606408986162,1.04544148007234,0.218362563746178,0.674321731924103,0.991841468704031,0,0.129614973291793,0,0,0,0,0.777804753376191,0.516639293910924,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.308132871494482,0.129920822977795,0.358053391334963,0,0,0,0.201932899896295,0,0,0,0,0,0,0,0,0,0.19318959403219,0.187682475451182,0.915758121336325,0.214368379079066,0,11.2950368523413,9.66682996665071,14.3223878359849,12.3734291287455,9.59115527678899,7.55393897389701,8.77529250301348,5.40385443869065,4.53142408984205,4.65984280576638,1.14166082342594,3.19219898720825,3.41467211508268,1.70174701947806,2.30574478890781,2.38996560985018,3.11145418922261,1.85431551515005,3.20919209591815,2.02157769411038,2.02783439912192,3.58390048633545,2.34103768674706,2.56100609619477,2.81433797882505,2.38146845641537,2.66533949673168,1.54327376370964,1.64834360321323,1.91358596174717,3.42869252385415,2.12970967391205,1.66905332963125,2.47088908274958,2.91739079287525,2.45382362885862,2.37806364734604,2.36762740294059,2.03706170768793,2.80571135828869,2.13543032623513,2.75812550651578,1.22769312950907,2.32405261778949,1.54325288784913,1.99848462350357,2.33931608445408,1.71896843238639,1.3390183244819,0.441182838239031,0.231867835620421 | |phase1_expression=2.40223270657191,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,1.43752564364972,0,0,0,0,0,0,15.1737345644698,14.8117474196169,8.87363964908651,0,0,0,0,0,0.599200221036809,0.384218305321555,1.14058573539325,1.08004750665353,1.26194976810829,15.996455126613,13.0312439161452,1.46988959057945,1.72521847832825,0.919218786610021,2.20231761998777,4.85211884723713,4.14737639791857,17.4089899803856,15.0039735507952,17.7110545989298,2.79182999001381,2.25105044012672,2.90316670775939,16.7938293719991,16.0879999302986,20.6903384866084,2.27178579999552,2.34271836331035,0,0,0,0,0,0,0.421333260395256,0,0,0,3.09855523508697,0,0,0,0,0,0,0,0,0,1.21439728736295,0.608930956624282,0.230615497256059,0.452167921657868,0.23517741427141,0.125666591329675,0,0.144599356919912,0,0.323533699894818,0,0,0,29.5708604981663,36.2342802787277,0,0,0,0,5.54225365797844,2.74500361691176,4.64921102817598,4.86708096538374,7.41574826257959,6.44142938134636,5.51620294430376,1.62942982160506,0,0,2.52530227063769,1.04096354370163,2.5289231487682,3.42118046630164,6.0281927134286,9.79725587779121,6.40568601424249,7.77724313845749,13.1938719076898,1.07783996466421,3.02569728268511,2.81521798662318,1.09597866213787,0.834141747676794,0.696504333044333,0.411564272815887,1.59227413454795,0,0,0,4.76389276831654,3.28336483973535,4.32148947506436,4.97163944728941,1.77087808572663,1.3884040159864,1.16266972375204,0.804820204198858,0.583826711835847,1.31647879930784,0.985004784474571,0.405344047729279,0.292399974850665,0,0,1.47202963994889,1.9551876352064,0,0,3.41261200856374,2.55460339046482,0.644337306610467,0.605050573870028,0.667134131534611,0.190225626112559,0,0.164698954724011,0,0,0,0,0,0,1.51734320762465,3.19895835307241,1.1270773567308,1.22190796707189,2.13347735884388,1.19230893813542,0.379419222745544,0.147610147979602,0,0,0,0.667380422864376,0.589676985339609,0.449724224769707,0,0,0,0,0,0,0,0,0.624075346229121,0,0,0,0,3.41084541186873,0.651859905768103,0.678980343100753,0.938760993154008,0,0,0.195133647857799,0.315270288212382,0,0.159454768657487,0,0,0,0,0,0,0,1.9266070798535,3.8679856575427,0,0,0.94652465824877,0.390438744296638,1.07711698866399,0.477937595905104,0.668396022247182,0.849229592366497,0,0.584511715822624,0,17.6726724031994,0.141940085208269,1.06839362200353,1.62886959353576,2.47455184458803,0,1.94224508923985,0,0.377210159511796,0.295301892880773,0,0,0.363533729477506,0.356497378384721,0,0,0,1.36175842301515,2.88097750450096,2.8458910432206,3.00071849044229,1.77340233642274,1.42695054081656,2.30368628842969,0.304464949114599,0,0,0,0,0.322928853391811,0.301564624640779,0.238744688006273,0,0.291480836629851,2.22510362412612,0,4.33412422722767,0.925972636848558,0,0,0,0,0,0,0,0.949007980743406,0.813277868507395,1.29606408986162,1.04544148007234,0.218362563746178,0.674321731924103,0.991841468704031,0,0.129614973291793,0,0,0,0,0.777804753376191,0.516639293910924,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,0,0.405450430580328,0.308132871494482,0.129920822977795,0.358053391334963,0,0,0,0.201932899896295,0,0,0,0,0,0,0,0,0,0.19318959403219,0.187682475451182,0.915758121336325,0.214368379079066,0,11.2950368523413,9.66682996665071,14.3223878359849,12.3734291287455,9.59115527678899,7.55393897389701,8.77529250301348,5.40385443869065,4.53142408984205,4.65984280576638,1.14166082342594,3.19219898720825,3.41467211508268,1.70174701947806,2.30574478890781,2.38996560985018,3.11145418922261,1.85431551515005,3.20919209591815,2.02157769411038,2.02783439912192,3.58390048633545,2.34103768674706,2.56100609619477,2.81433797882505,2.38146845641537,2.66533949673168,1.54327376370964,1.64834360321323,1.91358596174717,3.42869252385415,2.12970967391205,1.66905332963125,2.47088908274958,2.91739079287525,2.45382362885862,2.37806364734604,2.36762740294059,2.03706170768793,2.80571135828869,2.13543032623513,2.75812550651578,1.22769312950907,2.32405261778949,1.54325288784913,1.99848462350357,2.33931608445408,1.71896843238639,1.3390183244819,0.441182838239031,0.231867835620421 | ||
|short_description=p2@Ntm | |short_description=p2@Ntm | ||
}} | }} |
Latest revision as of 12:44, 26 September 2015
Short description: | p2@Ntm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ntm_5end |
Coexpression cluster: | MCL_coexpression_mm9:367 |
Association with transcript: | -431bp_to_ENSMUST00000115237_5end |
EntrezGene: | Ntm |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.68e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.68e-12 | 23 |
neuron | 1.15e-07 | 33 |
neuronal stem cell | 1.15e-07 | 33 |
neuroblast | 1.15e-07 | 33 |
electrically signaling cell | 1.15e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.62e-26 | 64 |
neural plate | 5.62e-26 | 64 |
presumptive neural plate | 5.62e-26 | 64 |
regional part of nervous system | 4.14e-23 | 54 |
ecto-epithelium | 2.74e-22 | 73 |
ectoderm-derived structure | 9.51e-22 | 95 |
ectoderm | 9.51e-22 | 95 |
presumptive ectoderm | 9.51e-22 | 95 |
neural tube | 1.01e-21 | 52 |
neural rod | 1.01e-21 | 52 |
future spinal cord | 1.01e-21 | 52 |
neural keel | 1.01e-21 | 52 |
pre-chordal neural plate | 2.63e-21 | 49 |
nervous system | 4.57e-21 | 75 |
structure with developmental contribution from neural crest | 1.47e-20 | 92 |
central nervous system | 3.08e-20 | 73 |
brain | 5.93e-18 | 47 |
future brain | 5.93e-18 | 47 |
regional part of brain | 4.21e-17 | 46 |
gray matter | 2.47e-16 | 34 |
anterior neural tube | 6.56e-16 | 40 |
regional part of forebrain | 3.26e-15 | 39 |
forebrain | 3.26e-15 | 39 |
future forebrain | 3.26e-15 | 39 |
brain grey matter | 3.47e-12 | 29 |
regional part of telencephalon | 3.47e-12 | 29 |
telencephalon | 3.47e-12 | 29 |
occipital lobe | 6.57e-09 | 10 |
visual cortex | 6.57e-09 | 10 |
neocortex | 6.57e-09 | 10 |
cerebral cortex | 1.52e-07 | 21 |
cerebral hemisphere | 1.52e-07 | 21 |
pallium | 1.52e-07 | 21 |