FFCP PHASE1:Mm9::chr2:29980049..29980107,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=227693 | |EntrezGene=227693 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=Q80ZJ6 | |UniProt=Q80ZJ6 | ||
|association_with_transcript=0bp_to_ENSMUST00000113677,ENSMUST00000133354,ENSMUST00000154231_5end | |association_with_transcript=0bp_to_ENSMUST00000113677,ENSMUST00000133354,ENSMUST00000154231_5end | ||
|cluster_id=chr2:29980049..29980107,- | |||
|description=CAGE_peak_1_at_Zer1_5end | |description=CAGE_peak_1_at_Zer1_5end | ||
|id=chr2:29980049..29980107,- | |id=chr2:29980049..29980107,- | ||
|ontology_enrichment_celltype=CL:0000117!3.83e-11!23;CL:0000337!3.83e-11!23;CL:0000540!1.08e-10!33;CL:0000047!1.08e-10!33;CL:0000031!1.08e-10!33;CL:0000404!1.08e-10!33;CL:0002319!9.33e-10!43;CL:0000221!3.65e-09!44;CL:0000133!3.65e-09!44;CL:0000393!9.18e-07!39;CL:0000211!9.18e-07!39 | |ontology_enrichment_celltype=CL:0000117!3.83e-11!23;CL:0000337!3.83e-11!23;CL:0000540!1.08e-10!33;CL:0000047!1.08e-10!33;CL:0000031!1.08e-10!33;CL:0000404!1.08e-10!33;CL:0002319!9.33e-10!43;CL:0000221!3.65e-09!44;CL:0000133!3.65e-09!44;CL:0000393!9.18e-07!39;CL:0000211!9.18e-07!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.83e-11,23;CL:0000337,3.83e-11,23;CL:0000540,1.08e-10,33;CL:0000047,1.08e-10,33;CL:0000031,1.08e-10,33;CL:0000404,1.08e-10,33;CL:0002319,9.33e-10,43;CL:0000221,3.65e-09,44;CL:0000133,3.65e-09,44;CL:0000393,9.18e-07,39;CL:0000211,9.18e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.86e-28!73;UBERON:0005743!1.86e-28!73;UBERON:0000073!3.41e-26!75;UBERON:0001016!3.41e-26!75;UBERON:0001049!2.46e-23!52;UBERON:0005068!2.46e-23!52;UBERON:0006241!2.46e-23!52;UBERON:0007135!2.46e-23!52;UBERON:0000955!5.57e-23!50;UBERON:0006238!5.57e-23!50;UBERON:0007811!6.91e-23!86;UBERON:0000153!1.11e-22!94;UBERON:0002616!2.37e-22!49;UBERON:0002346!3.82e-22!71;UBERON:0003075!3.82e-22!71;UBERON:0007284!3.82e-22!71;UBERON:0000033!4.87e-22!63;UBERON:0004121!7.34e-22!102;UBERON:0000924!7.34e-22!102;UBERON:0006601!7.34e-22!102;UBERON:0003056!8.59e-19!49;UBERON:0003080!1.46e-17!40;UBERON:0002780!7.48e-17!39;UBERON:0001890!7.48e-17!39;UBERON:0006240!7.48e-17!39;UBERON:0002020!2.19e-16!34;UBERON:0002791!4.21e-14!29;UBERON:0003528!4.21e-14!29;UBERON:0001893!4.21e-14!29;UBERON:0000956!6.44e-10!21;UBERON:0001869!6.44e-10!21;UBERON:0000203!6.44e-10!21;UBERON:0002619!8.44e-09!17;UBERON:0002021!6.12e-08!10;UBERON:0000411!6.12e-08!10;UBERON:0001950!6.12e-08!10 | |ontology_enrichment_uberon=UBERON:0001017!1.86e-28!73;UBERON:0005743!1.86e-28!73;UBERON:0000073!3.41e-26!75;UBERON:0001016!3.41e-26!75;UBERON:0001049!2.46e-23!52;UBERON:0005068!2.46e-23!52;UBERON:0006241!2.46e-23!52;UBERON:0007135!2.46e-23!52;UBERON:0000955!5.57e-23!50;UBERON:0006238!5.57e-23!50;UBERON:0007811!6.91e-23!86;UBERON:0000153!1.11e-22!94;UBERON:0002616!2.37e-22!49;UBERON:0002346!3.82e-22!71;UBERON:0003075!3.82e-22!71;UBERON:0007284!3.82e-22!71;UBERON:0000033!4.87e-22!63;UBERON:0004121!7.34e-22!102;UBERON:0000924!7.34e-22!102;UBERON:0006601!7.34e-22!102;UBERON:0003056!8.59e-19!49;UBERON:0003080!1.46e-17!40;UBERON:0002780!7.48e-17!39;UBERON:0001890!7.48e-17!39;UBERON:0006240!7.48e-17!39;UBERON:0002020!2.19e-16!34;UBERON:0002791!4.21e-14!29;UBERON:0003528!4.21e-14!29;UBERON:0001893!4.21e-14!29;UBERON:0000956!6.44e-10!21;UBERON:0001869!6.44e-10!21;UBERON:0000203!6.44e-10!21;UBERON:0002619!8.44e-09!17;UBERON:0002021!6.12e-08!10;UBERON:0000411!6.12e-08!10;UBERON:0001950!6.12e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.86e-28,73;UBERON:0001016,3.41e-26,75;UBERON:0000073,7.03e-25,54;UBERON:0002346,2.68e-24,64;UBERON:0003075,2.68e-24,64;UBERON:0007284,2.68e-24,64;UBERON:0001049,2.46e-23,52;UBERON:0005068,2.46e-23,52;UBERON:0006241,2.46e-23,52;UBERON:0007135,2.46e-23,52;UBERON:0004121,3.54e-23,95;UBERON:0000924,3.54e-23,95;UBERON:0006601,3.54e-23,95;UBERON:0000955,7.05e-21,47;UBERON:0006238,7.05e-21,47;UBERON:0002616,2.91e-20,46;UBERON:0010371,3.50e-19,73;UBERON:0003056,8.59e-19,49;UBERON:0003080,1.46e-17,40;UBERON:0002780,7.48e-17,39;UBERON:0001890,7.48e-17,39;UBERON:0006240,7.48e-17,39;UBERON:0002020,2.19e-16,34;UBERON:0003528,4.21e-14,29;UBERON:0002791,4.21e-14,29;UBERON:0001893,4.21e-14,29;UBERON:0010314,6.23e-14,92;UBERON:0000956,6.44e-10,21;UBERON:0001869,6.44e-10,21;UBERON:0000203,6.44e-10,21;UBERON:0002619,8.44e-09,17;UBERON:0002021,6.12e-08,10;UBERON:0000411,6.12e-08,10;UBERON:0001950,6.12e-08,10 | |||
|phase1_expression=12.9720566154883,4.88565570695105,3.63999391511629,3.0246421130683,2.00358291978539,4.36486106970913,5.13947809310157,56.1686456970857,3.51971805379167,3.5109678948299,5.99262888789267,3.58974715479014,36.4657554753468,41.4372707466048,17.3217076144145,14.1732687172878,16.0899231969474,49.6852910439224,48.1271661956143,56.01943403734,26.9587229778891,22.0425911665965,16.194386926614,5.27974995218242,4.5881856213434,2.8711598205751,1.7230479846363,1.50829862880122,3.04037471130198,3.52842181663903,2.66076612786366,15.2407361630311,18.4519436275371,0,4.33277429626912,4.3221007793208,4.49172583777212,22.600708059793,7.813353445238,16.2292360631877,28.2351114254887,29.3709558532132,18.934903768215,7.67970589651021,8.31290836000019,6.24058957349717,32.0780451182696,17.6600376668162,12.7417985985994,18.2764105129826,18.4782076545479,21.5628846547457,24.4962604844295,31.9159342484992,29.2401605253944,7.46052364504246,12.0344044774278,11.3447860301037,45.5212036934095,49.7251520515711,45.0020296489387,9.14880236586657,20.4537803105562,14.8483453351431,12.8552627133707,17.7620028736525,19.4740071836963,24.5899715405795,20.6342328493871,22.5459917013923,24.6080204781117,47.989365379839,48.3702104684034,30.1327366068787,26.1658135879785,37.6879702510109,135.442533629248,93.0840694641018,106.602934079833,50.9081070638548,38.4248103130121,36.4639359389732,92.1303896704557,100.171744585639,106.80597519599,48.6137166031552,40.7183007085434,38.7710847316625,1.96888102666279,8.53958629206676,8.40607017234866,3.44169550792555,3.39985666853875,3.77792234146472,3.24888208723835,4.03224198387602,11.2355536105401,4.26075806445144,3.89679006904303,2.12003744706204,9.71819596459095,8.98285341900225,12.7402619853323,14.2213340630666,2.59789249213457,3.04031838570118,2.02209778005913,10.7332846935916,33.4029869904852,20.336573051881,11.7970022200972,16.1366703505435,14.7593918243877,12.8114244469729,17.9910721917628,10.1789938977037,16.3148678704687,7.66376591675532,12.3845477272982,12.1325137460557,13.0296495891632,12.6067565815158,11.1835056730873,64.9973369365635,67.4418395939325,10.9846533739694,11.8616973260861,10.7982491578813,9.14905634926066,125.224974542432,107.970142265196,47.3716907465499,95.0819031451752,87.9661173216337,97.2448048538741,90.0439010026055,11.915205570487,16.1729061793121,17.4378703319236,26.7261156975822,16.7855371421888,15.8632452059096,13.6847218652065,19.7423311364787,30.6844611172489,26.9038812598185,28.672727715277,54.5864112259323,12.7185115830377,13.0483195315795,18.6508191613786,17.9740500590611,16.6828349535359,16.3678518265418,14.404749548556,13.335295876839,12.6398373716382,13.1247432628505,12.5031939734061,11.8061690345236,13.1334593589414,10.2635375032778,16.5721314909647,12.3961466000864,10.4901636763417,12.0917651270212,12.8771232671817,17.8650973821769,11.6837493438571,13.790066982644,14.3491792896165,14.7661987299586,10.3188554186794,16.1047702512446,99.0465657737039,31.3859067756818,9.91256348951394,5.28901133327089,18.1295012954949,13.7019636397659,16.2373001265838,8.87407508342707,10.4517680607089,14.2669219584419,8.0669940462567,12.5171205590248,13.8234364840148,15.9165177632921,14.2323783596958,7.19055526923377,6.26800344636613,10.7536287557358,13.6560888686219,14.9665551518745,14.6520056375005,13.2373363099454,17.2617713579187,18.3755848112635,15.7458977439401,9.00421902675573,8.63493003127561,8.51440431060424,1.1858105083486,15.1829046201646,12.1866576970186,15.0657615297852,12.9830477688642,12.5412123071257,7.63877555344259,7.48009957372108,10.3766545136023,3.84385978463314,8.62609239164127,7.81495990103857,7.80094182786401,3.78868316920668,4.12614051100398,2.8946611281802,19.7685913478267,9.66406200029472,12.711268162478,12.0519010900384,13.6120344007331,22.1108259823197,21.9000149615133,13.6593553500459,16.3940549870439,17.2742457926044,15.6265673284337,14.0922450655535,11.3972088031491,14.4649058581512,12.0633027151418,3.26343410291226,11.8023425524569,13.2449638226272,80.275294993896,68.0999899100701,6.88526770582037,13.8859009962405,15.4599027513966,13.2749173060857,24.9891141370047,16.010909462821,18.4922899488387,20.0984336860071,18.2164815753702,25.1340037803728,25.2984177885775,82.2582570039826,15.1875891172847,18.16269157406,16.125808976004,15.6721616823909,13.2745138339963,13.8384962608339,12.09294227859,11.127699705598,14.4697927511579,13.2197113615889,11.8877014857382,12.7236805317127,9.26893183800275,10.4292130118819,15.8127912862498,9.28219889233682,51.0659408630682,16.5656206508805,17.9808570458029,17.361299837559,23.9409315417069,24.2581591938816,25.834196234533,51.4545764003673,9.85621173867584,18.4293901651524,8.82113592219848,11.0473789470792,15.5005849628069,10.7357006372117,13.0115854963419,11.6540038818993,8.16146342563582,58.9652460393421,19.6501512917531,17.1301100409475,12.7784223885101,16.7647926734175,15.7198361879179,21.0475919350001,12.4084253895514,12.0358248998346,12.2997976685937,5.72802370809068,19.2964956084493,14.84232110026,1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| |phase1_expression=12.9720566154883,4.88565570695105,3.63999391511629,3.0246421130683,2.00358291978539,4.36486106970913,5.13947809310157,56.1686456970857,3.51971805379167,3.5109678948299,5.99262888789267,3.58974715479014,36.4657554753468,41.4372707466048,17.3217076144145,14.1732687172878,16.0899231969474,49.6852910439224,48.1271661956143,56.01943403734,26.9587229778891,22.0425911665965,16.194386926614,5.27974995218242,4.5881856213434,2.8711598205751,1.7230479846363,1.50829862880122,3.04037471130198,3.52842181663903,2.66076612786366,15.2407361630311,18.4519436275371,0,4.33277429626912,4.3221007793208,4.49172583777212,22.600708059793,7.813353445238,16.2292360631877,28.2351114254887,29.3709558532132,18.934903768215,7.67970589651021,8.31290836000019,6.24058957349717,32.0780451182696,17.6600376668162,12.7417985985994,18.2764105129826,18.4782076545479,21.5628846547457,24.4962604844295,31.9159342484992,29.2401605253944,7.46052364504246,12.0344044774278,11.3447860301037,45.5212036934095,49.7251520515711,45.0020296489387,9.14880236586657,20.4537803105562,14.8483453351431,12.8552627133707,17.7620028736525,19.4740071836963,24.5899715405795,20.6342328493871,22.5459917013923,24.6080204781117,47.989365379839,48.3702104684034,30.1327366068787,26.1658135879785,37.6879702510109,135.442533629248,93.0840694641018,106.602934079833,50.9081070638548,38.4248103130121,36.4639359389732,92.1303896704557,100.171744585639,106.80597519599,48.6137166031552,40.7183007085434,38.7710847316625,1.96888102666279,8.53958629206676,8.40607017234866,3.44169550792555,3.39985666853875,3.77792234146472,3.24888208723835,4.03224198387602,11.2355536105401,4.26075806445144,3.89679006904303,2.12003744706204,9.71819596459095,8.98285341900225,12.7402619853323,14.2213340630666,2.59789249213457,3.04031838570118,2.02209778005913,10.7332846935916,33.4029869904852,20.336573051881,11.7970022200972,16.1366703505435,14.7593918243877,12.8114244469729,17.9910721917628,10.1789938977037,16.3148678704687,7.66376591675532,12.3845477272982,12.1325137460557,13.0296495891632,12.6067565815158,11.1835056730873,64.9973369365635,67.4418395939325,10.9846533739694,11.8616973260861,10.7982491578813,9.14905634926066,125.224974542432,107.970142265196,47.3716907465499,95.0819031451752,87.9661173216337,97.2448048538741,90.0439010026055,11.915205570487,16.1729061793121,17.4378703319236,26.7261156975822,16.7855371421888,15.8632452059096,13.6847218652065,19.7423311364787,30.6844611172489,26.9038812598185,28.672727715277,54.5864112259323,12.7185115830377,13.0483195315795,18.6508191613786,17.9740500590611,16.6828349535359,16.3678518265418,14.404749548556,13.335295876839,12.6398373716382,13.1247432628505,12.5031939734061,11.8061690345236,13.1334593589414,10.2635375032778,16.5721314909647,12.3961466000864,10.4901636763417,12.0917651270212,12.8771232671817,17.8650973821769,11.6837493438571,13.790066982644,14.3491792896165,14.7661987299586,10.3188554186794,16.1047702512446,99.0465657737039,31.3859067756818,9.91256348951394,5.28901133327089,18.1295012954949,13.7019636397659,16.2373001265838,8.87407508342707,10.4517680607089,14.2669219584419,8.0669940462567,12.5171205590248,13.8234364840148,15.9165177632921,14.2323783596958,7.19055526923377,6.26800344636613,10.7536287557358,13.6560888686219,14.9665551518745,14.6520056375005,13.2373363099454,17.2617713579187,18.3755848112635,15.7458977439401,9.00421902675573,8.63493003127561,8.51440431060424,1.1858105083486,15.1829046201646,12.1866576970186,15.0657615297852,12.9830477688642,12.5412123071257,7.63877555344259,7.48009957372108,10.3766545136023,3.84385978463314,8.62609239164127,7.81495990103857,7.80094182786401,3.78868316920668,4.12614051100398,2.8946611281802,19.7685913478267,9.66406200029472,12.711268162478,12.0519010900384,13.6120344007331,22.1108259823197,21.9000149615133,13.6593553500459,16.3940549870439,17.2742457926044,15.6265673284337,14.0922450655535,11.3972088031491,14.4649058581512,12.0633027151418,3.26343410291226,11.8023425524569,13.2449638226272,80.275294993896,68.0999899100701,6.88526770582037,13.8859009962405,15.4599027513966,13.2749173060857,24.9891141370047,16.010909462821,18.4922899488387,20.0984336860071,18.2164815753702,25.1340037803728,25.2984177885775,82.2582570039826,15.1875891172847,18.16269157406,16.125808976004,15.6721616823909,13.2745138339963,13.8384962608339,12.09294227859,11.127699705598,14.4697927511579,13.2197113615889,11.8877014857382,12.7236805317127,9.26893183800275,10.4292130118819,15.8127912862498,9.28219889233682,51.0659408630682,16.5656206508805,17.9808570458029,17.361299837559,23.9409315417069,24.2581591938816,25.834196234533,51.4545764003673,9.85621173867584,18.4293901651524,8.82113592219848,11.0473789470792,15.5005849628069,10.7357006372117,13.0115854963419,11.6540038818993,8.16146342563582,58.9652460393421,19.6501512917531,17.1301100409475,12.7784223885101,16.7647926734175,15.7198361879179,21.0475919350001,12.4084253895514,12.0358248998346,12.2997976685937,5.72802370809068,19.2964956084493,14.84232110026,1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| ||
|short_description=p1@Zer1 | |short_description=p1@Zer1 | ||
}} | }} |
Latest revision as of 12:51, 26 September 2015
Short description: | p1@Zer1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zer1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000113677, ENSMUST00000133354, ENSMUST00000154231_5end |
EntrezGene: | Zer1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.83e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.83e-11 | 23 |
neuron | 1.08e-10 | 33 |
neuronal stem cell | 1.08e-10 | 33 |
neuroblast | 1.08e-10 | 33 |
electrically signaling cell | 1.08e-10 | 33 |
neural cell | 9.33e-10 | 43 |
ectodermal cell | 3.65e-09 | 44 |
neurectodermal cell | 3.65e-09 | 44 |
electrically responsive cell | 9.18e-07 | 39 |
electrically active cell | 9.18e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.86e-28 | 73 |
nervous system | 3.41e-26 | 75 |
regional part of nervous system | 7.03e-25 | 54 |
neurectoderm | 2.68e-24 | 64 |
neural plate | 2.68e-24 | 64 |
presumptive neural plate | 2.68e-24 | 64 |
neural tube | 2.46e-23 | 52 |
neural rod | 2.46e-23 | 52 |
future spinal cord | 2.46e-23 | 52 |
neural keel | 2.46e-23 | 52 |
ectoderm-derived structure | 3.54e-23 | 95 |
ectoderm | 3.54e-23 | 95 |
presumptive ectoderm | 3.54e-23 | 95 |
brain | 7.05e-21 | 47 |
future brain | 7.05e-21 | 47 |
regional part of brain | 2.91e-20 | 46 |
ecto-epithelium | 3.50e-19 | 73 |
pre-chordal neural plate | 8.59e-19 | 49 |
anterior neural tube | 1.46e-17 | 40 |
regional part of forebrain | 7.48e-17 | 39 |
forebrain | 7.48e-17 | 39 |
future forebrain | 7.48e-17 | 39 |
gray matter | 2.19e-16 | 34 |
brain grey matter | 4.21e-14 | 29 |
regional part of telencephalon | 4.21e-14 | 29 |
telencephalon | 4.21e-14 | 29 |
structure with developmental contribution from neural crest | 6.23e-14 | 92 |
cerebral cortex | 6.44e-10 | 21 |
cerebral hemisphere | 6.44e-10 | 21 |
pallium | 6.44e-10 | 21 |
regional part of cerebral cortex | 8.44e-09 | 17 |
occipital lobe | 6.12e-08 | 10 |
visual cortex | 6.12e-08 | 10 |
neocortex | 6.12e-08 | 10 |