FFCP PHASE1:Mm9::chr2:32143542..32143562,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:32143542..32143562,-
|short_description=p1@Swi5
|description=CAGE_peak_1_at_Swi5_5end
|association_with_transcript=0bp_to_ENSMUST00000127131_5end
|EntrezG...") |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=72931 | |EntrezGene=72931 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000127131_5end | |||
|cluster_id=chr2:32143542..32143562,- | |||
|description=CAGE_peak_1_at_Swi5_5end | |||
|id=chr2:32143542..32143562,- | |||
|ontology_enrichment_celltype=CL:0000055!5.62e-20!50;CL:0000221!2.28e-18!44;CL:0000133!2.28e-18!44;CL:0002319!3.05e-18!43;CL:0000393!2.23e-14!39;CL:0000211!2.23e-14!39;CL:0000540!1.18e-12!33;CL:0000047!1.18e-12!33;CL:0000031!1.18e-12!33;CL:0000404!1.18e-12!33;CL:0002321!2.66e-12!70;CL:0000220!2.66e-12!70;CL:0000117!9.85e-10!23;CL:0000337!9.85e-10!23;CL:0002453!9.18e-07!8;CL:0000333!9.97e-07!10;CL:0000095!9.97e-07!10;CL:0000243!9.97e-07!10;CL:0000123!9.97e-07!10;CL:0000125!9.97e-07!10;CL:0000030!9.97e-07!10;CL:0000339!9.97e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.28e-18,44;CL:0000133,2.28e-18,44;CL:0002319,3.05e-18,43;CL:0000393,2.23e-14,39;CL:0000211,2.23e-14,39;CL:0000540,1.18e-12,33;CL:0000047,1.18e-12,33;CL:0000031,1.18e-12,33;CL:0000404,1.18e-12,33;CL:0002321,2.66e-12,70;CL:0000117,9.85e-10,23;CL:0000337,9.85e-10,23;CL:0002453,9.18e-07,8;CL:0000333,9.97e-07,10;CL:0000095,9.97e-07,10;CL:0000243,9.97e-07,10;CL:0000123,9.97e-07,10;CL:0000125,9.97e-07,10;CL:0000030,9.97e-07,10;CL:0000339,9.97e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.67e-15,75;UBERON:0001017,4.04e-15,73;UBERON:0004121,1.07e-13,95;UBERON:0000924,1.07e-13,95;UBERON:0006601,1.07e-13,95;UBERON:0010314,5.57e-12,92;UBERON:0000073,4.41e-09,54;UBERON:0002346,6.30e-09,64;UBERON:0003075,6.30e-09,64;UBERON:0007284,6.30e-09,64;UBERON:0002020,8.50e-09,34;UBERON:0010371,2.37e-08,73;UBERON:0001049,3.85e-08,52;UBERON:0005068,3.85e-08,52;UBERON:0006241,3.85e-08,52;UBERON:0007135,3.85e-08,52;UBERON:0004111,4.95e-08,122;UBERON:0002780,6.91e-08,39;UBERON:0001890,6.91e-08,39;UBERON:0006240,6.91e-08,39;UBERON:0003080,1.12e-07,40;UBERON:0003528,2.46e-07,29;UBERON:0002791,2.46e-07,29;UBERON:0001893,2.46e-07,29;UBERON:0000025,2.77e-07,114;UBERON:0003056,3.09e-07,49;UBERON:0002616,4.02e-07,46;UBERON:0000955,8.26e-07,47;UBERON:0006238,8.26e-07,47 | |||
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| ||
|short_description=p1@Swi5 | |||
}} | }} |
Latest revision as of 14:07, 26 September 2015
Short description: | p1@Swi5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Swi5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000127131_5end |
EntrezGene: | Swi5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.28e-18 | 44 |
neurectodermal cell | 2.28e-18 | 44 |
neural cell | 3.05e-18 | 43 |
electrically responsive cell | 2.23e-14 | 39 |
electrically active cell | 2.23e-14 | 39 |
neuron | 1.18e-12 | 33 |
neuronal stem cell | 1.18e-12 | 33 |
neuroblast | 1.18e-12 | 33 |
electrically signaling cell | 1.18e-12 | 33 |
embryonic cell | 2.66e-12 | 70 |
CNS neuron (sensu Vertebrata) | 9.85e-10 | 23 |
neuroblast (sensu Vertebrata) | 9.85e-10 | 23 |
oligodendrocyte precursor cell | 9.18e-07 | 8 |
migratory neural crest cell | 9.97e-07 | 10 |
neuron associated cell | 9.97e-07 | 10 |
glial cell (sensu Vertebrata) | 9.97e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.97e-07 | 10 |
glial cell | 9.97e-07 | 10 |
glioblast | 9.97e-07 | 10 |
glioblast (sensu Vertebrata) | 9.97e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.67e-15 | 75 |
central nervous system | 4.04e-15 | 73 |
ectoderm-derived structure | 1.07e-13 | 95 |
ectoderm | 1.07e-13 | 95 |
presumptive ectoderm | 1.07e-13 | 95 |
structure with developmental contribution from neural crest | 5.57e-12 | 92 |
regional part of nervous system | 4.41e-09 | 54 |
neurectoderm | 6.30e-09 | 64 |
neural plate | 6.30e-09 | 64 |
presumptive neural plate | 6.30e-09 | 64 |
gray matter | 8.50e-09 | 34 |
ecto-epithelium | 2.37e-08 | 73 |
neural tube | 3.85e-08 | 52 |
neural rod | 3.85e-08 | 52 |
future spinal cord | 3.85e-08 | 52 |
neural keel | 3.85e-08 | 52 |
anatomical conduit | 4.95e-08 | 122 |
regional part of forebrain | 6.91e-08 | 39 |
forebrain | 6.91e-08 | 39 |
future forebrain | 6.91e-08 | 39 |
anterior neural tube | 1.12e-07 | 40 |
brain grey matter | 2.46e-07 | 29 |
regional part of telencephalon | 2.46e-07 | 29 |
telencephalon | 2.46e-07 | 29 |
tube | 2.77e-07 | 114 |
pre-chordal neural plate | 3.09e-07 | 49 |
regional part of brain | 4.02e-07 | 46 |
brain | 8.26e-07 | 47 |
future brain | 8.26e-07 | 47 |