FFCP PHASE1:Mm9::chr12:70298187..70298240,+: Difference between revisions
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{{FFCP|EntrezGene=414085|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000169974,NR_033222,uc007nru.1_5end|description=CAGE_peak_1_at_9330151L19Rik_5end|id=chr12:70298187..70298240,+|ontology_enrichment_celltype=CL:0000540!5.75e-07!33;CL:0000047!5.75e-07!33;CL:0000031!5.75e-07!33;CL:0000404!5.75e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,5.75e-07,33;CL:0000047,5.75e-07,33;CL:0000031,5.75e-07,33;CL:0000404,5.75e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.60e-20!73;UBERON:0005743!4.60e-20!73;UBERON:0000073!4.16e-18!75;UBERON:0001016!4.16e-18!75;UBERON:0000033!8.44e-18!63;UBERON:0004121!4.17e-17!102;UBERON:0000924!4.17e-17!102;UBERON:0006601!4.17e-17!102;UBERON:0002346!2.94e-16!71;UBERON:0003075!2.94e-16!71;UBERON:0007284!2.94e-16!71;UBERON:0001049!1.22e-15!52;UBERON:0005068!1.22e-15!52;UBERON:0006241!1.22e-15!52;UBERON:0007135!1.22e-15!52;UBERON:0000955!4.29e-15!50;UBERON:0006238!4.29e-15!50;UBERON:0002616!1.22e-14!49;UBERON:0003056!1.12e-12!49;UBERON:0003080!1.67e-11!40;UBERON:0002780!6.27e-11!39;UBERON:0001890!6.27e-11!39;UBERON:0006240!6.27e-11!39;UBERON:0007811!1.27e-10!86;UBERON:0000153!3.43e-10!94;UBERON:0002020!1.37e-09!34;UBERON:0002021!4.92e-08!10;UBERON:0000411!4.92e-08!10;UBERON:0001950!4.92e-08!10;UBERON:0002791!1.08e-07!29;UBERON:0003528!1.08e-07!29;UBERON:0001893!1.08e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.60e-20,73;UBERON:0001016,4.16e-18,75;UBERON:0004121,3.09e-17,95;UBERON:0000924,3.09e-17,95;UBERON:0006601,3.09e-17,95;UBERON:0002346,8.47e-17,64;UBERON:0003075,8.47e-17,64;UBERON:0007284,8.47e-17,64;UBERON:0000073,8.96e-17,54;UBERON:0001049,1.22e-15,52;UBERON:0005068,1.22e-15,52;UBERON:0006241,1.22e-15,52;UBERON:0007135,1.22e-15,52;UBERON:0010371,7.55e-15,73;UBERON:0000955,1.74e-13,47;UBERON:0006238,1.74e-13,47;UBERON:0002616,4.83e-13,46;UBERON:0003056,1.12e-12,49;UBERON:0010314,1.61e-11,92;UBERON:0003080,1.67e-11,40;UBERON:0002780,6.27e-11,39;UBERON:0001890,6.27e-11,39;UBERON:0006240,6.27e-11,39;UBERON:0002020,1.37e-09,34;UBERON:0002021,4.92e-08,10;UBERON:0000411,4.92e-08,10;UBERON:0001950,4.92e-08,10;UBERON:0003528,1.08e-07,29;UBERON:0002791,1.08e-07,29;UBERON:0001893,1.08e-07,29|phase1_expression=11.3705681444404,2.09385244583617,0.909998478779072,2.72217790176147,5.50985302940982,3.52546471014969,1.86890112476421,6.84353614240354,16.8946466582,17.0867104215055,9.58820622062828,10.1310641924077,3.93761678841773,7.43073420561478,8.99396356902289,4.25198061518635,4.19737126876888,5.52058789376916,4.66189074259512,8.48779303596061,6.12311689087702,5.95745707205312,9.66439219814061,2.55987876469451,3.21172993494038,2.29692785646008,0.86152399231815,2.80112602491656,1.90023419456374,1.76421090831952,1.10865255327652,12.7006134691926,14.1464901144451,31.6963362030877,1.44425809875637,3.49092755252834,4.69589519403449,3.76678467663217,2.3440060335714,2.61761871986899,9.41170380849623,2.04913645487534,5.82612423637384,3.77690453926732,3.34543873024398,4.40512205188036,7.04152209913235,3.05235218932625,4.39372365468944,3.88859798148567,2.51975558925653,5.75010257459886,3.85899993932794,5.07753499407941,8.4023449785616,2.57259436035947,1.71920063963254,2.06268836910977,7.89034197352431,7.40587370980846,9.50747105259269,2.03306719241479,0.889294796111139,6.29929802096979,3.9554654502679,10.6572017241915,5.99200221036809,13.4476406862544,6.22137673850866,4.45519596494579,4.20649922702764,12.2829923293636,12.589506834242,4.40966877173835,4.98396449294829,3.67687514644008,18.7196997698961,11.8749224419225,10.5988507946808,7.91317726381163,8.14240028061446,7.29278718779464,11.725685958058,9.56696437053856,13.4462458043593,7.95497180778903,7.54569908235246,9.13357284543973,1.96888102666279,1.73814588245607,3.47837386442013,1.72084775396277,5.439770669662,2.15881276655127,3.24888208723835,4.03224198387602,5.61777680527007,4.4311883870295,4.41636207824877,3.18005617059306,9.01397886570755,2.56652954828636,2.54805239706646,0,1.29894624606728,4.05375784760158,3.53867111510348,3.31133251185274,2.33044095282455,5.78924342352817,6.7659277438793,6.08930956624282,5.07354093963329,3.16517545160507,5.76184664964954,6.28332956648377,1.97755974187499,2.74738778147832,4.42305275974937,5.50007289821191,7.50861162765338,5.33362778448744,3.72783522436244,16.6885054296582,13.6140359428746,3.83185582812887,2.27648736561249,7.7987355029143,2.54140454146129,17.6752954497691,12.3525162761029,4.64921102817598,14.4274185759589,19.6900902144355,12.6750707181332,14.7639549391659,4.58277137326423,4.97627882440372,11.3725241295154,5.47148825304832,5.85541993332167,5.28774840196988,4.50155324513373,6.93242162044289,9.0488543871266,8.71173297936978,9.55757590509234,9.8307280880826,2.15567992932842,6.61871280587367,7.74184946321375,7.45265490253754,6.67313398141435,5.2237824978325,4.52720700097476,4.77682240364384,1.40442637462647,2.31613116403244,2.55747149456033,4.55676699578104,5.39409937956521,5.40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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=414085 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000169974,NR_033222,uc007nru.1_5end | |||
|cluster_id=chr12:70298187..70298240,+ | |||
|description=CAGE_peak_1_at_9330151L19Rik_5end | |||
|id=chr12:70298187..70298240,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.75e-07!33;CL:0000047!5.75e-07!33;CL:0000031!5.75e-07!33;CL:0000404!5.75e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.75e-07,33;CL:0000047,5.75e-07,33;CL:0000031,5.75e-07,33;CL:0000404,5.75e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.60e-20!73;UBERON:0005743!4.60e-20!73;UBERON:0000073!4.16e-18!75;UBERON:0001016!4.16e-18!75;UBERON:0000033!8.44e-18!63;UBERON:0004121!4.17e-17!102;UBERON:0000924!4.17e-17!102;UBERON:0006601!4.17e-17!102;UBERON:0002346!2.94e-16!71;UBERON:0003075!2.94e-16!71;UBERON:0007284!2.94e-16!71;UBERON:0001049!1.22e-15!52;UBERON:0005068!1.22e-15!52;UBERON:0006241!1.22e-15!52;UBERON:0007135!1.22e-15!52;UBERON:0000955!4.29e-15!50;UBERON:0006238!4.29e-15!50;UBERON:0002616!1.22e-14!49;UBERON:0003056!1.12e-12!49;UBERON:0003080!1.67e-11!40;UBERON:0002780!6.27e-11!39;UBERON:0001890!6.27e-11!39;UBERON:0006240!6.27e-11!39;UBERON:0007811!1.27e-10!86;UBERON:0000153!3.43e-10!94;UBERON:0002020!1.37e-09!34;UBERON:0002021!4.92e-08!10;UBERON:0000411!4.92e-08!10;UBERON:0001950!4.92e-08!10;UBERON:0002791!1.08e-07!29;UBERON:0003528!1.08e-07!29;UBERON:0001893!1.08e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.60e-20,73;UBERON:0001016,4.16e-18,75;UBERON:0004121,3.09e-17,95;UBERON:0000924,3.09e-17,95;UBERON:0006601,3.09e-17,95;UBERON:0002346,8.47e-17,64;UBERON:0003075,8.47e-17,64;UBERON:0007284,8.47e-17,64;UBERON:0000073,8.96e-17,54;UBERON:0001049,1.22e-15,52;UBERON:0005068,1.22e-15,52;UBERON:0006241,1.22e-15,52;UBERON:0007135,1.22e-15,52;UBERON:0010371,7.55e-15,73;UBERON:0000955,1.74e-13,47;UBERON:0006238,1.74e-13,47;UBERON:0002616,4.83e-13,46;UBERON:0003056,1.12e-12,49;UBERON:0010314,1.61e-11,92;UBERON:0003080,1.67e-11,40;UBERON:0002780,6.27e-11,39;UBERON:0001890,6.27e-11,39;UBERON:0006240,6.27e-11,39;UBERON:0002020,1.37e-09,34;UBERON:0002021,4.92e-08,10;UBERON:0000411,4.92e-08,10;UBERON:0001950,4.92e-08,10;UBERON:0003528,1.08e-07,29;UBERON:0002791,1.08e-07,29;UBERON:0001893,1.08e-07,29 | |||
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| |||
|short_description=p1@9330151L19Rik | |||
}} |
Latest revision as of 17:28, 26 September 2015
Short description: | p1@9330151L19Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_9330151L19Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000169974, NR_033222, uc007nru.1_5end |
EntrezGene: | 9330151L19Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.75e-07 | 33 |
neuronal stem cell | 5.75e-07 | 33 |
neuroblast | 5.75e-07 | 33 |
electrically signaling cell | 5.75e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.60e-20 | 73 |
nervous system | 4.16e-18 | 75 |
ectoderm-derived structure | 3.09e-17 | 95 |
ectoderm | 3.09e-17 | 95 |
presumptive ectoderm | 3.09e-17 | 95 |
neurectoderm | 8.47e-17 | 64 |
neural plate | 8.47e-17 | 64 |
presumptive neural plate | 8.47e-17 | 64 |
regional part of nervous system | 8.96e-17 | 54 |
neural tube | 1.22e-15 | 52 |
neural rod | 1.22e-15 | 52 |
future spinal cord | 1.22e-15 | 52 |
neural keel | 1.22e-15 | 52 |
ecto-epithelium | 7.55e-15 | 73 |
brain | 1.74e-13 | 47 |
future brain | 1.74e-13 | 47 |
regional part of brain | 4.83e-13 | 46 |
pre-chordal neural plate | 1.12e-12 | 49 |
structure with developmental contribution from neural crest | 1.61e-11 | 92 |
anterior neural tube | 1.67e-11 | 40 |
regional part of forebrain | 6.27e-11 | 39 |
forebrain | 6.27e-11 | 39 |
future forebrain | 6.27e-11 | 39 |
gray matter | 1.37e-09 | 34 |
occipital lobe | 4.92e-08 | 10 |
visual cortex | 4.92e-08 | 10 |
neocortex | 4.92e-08 | 10 |
brain grey matter | 1.08e-07 | 29 |
regional part of telencephalon | 1.08e-07 | 29 |
telencephalon | 1.08e-07 | 29 |